My NCBISign In
Computational identification of Drosophila microRNA genes
Eric C Lai, Pavel Tomancak, Robert W Williams, Gerald M Rubin
Genome Biol. 2003; 4(7): R42. Published online 2003 June 30. doi: 10.1186/gb-2003-4-7-r42
PMCID:
PMC193629
Abstract Full Text PDF–884K Supplementary Material

Is Cited by the Following 127 Articles in this Archive:

Functional parameters of Dicer-independent microRNA biogenesis
Jr-Shiuan Yang, Thomas Maurin, Eric C. Lai
RNA. 2012 May; 18(5): 945–957. doi: 10.1261/rna.032938.112
PMCID:
PMC3334703
Abstract Full Text PDF–2.8M
Identification of microRNAs from Amur grape (vitis amurensis Rupr.) by deep sequencing and analysis of microRNA variations with bioinformatics
Chen Wang, Jian Han, Chonghuai Liu, Korir Nicholas Kibet, Emrul Kayesh, Lingfei Shangguan, Xiaoying Li, Jinggui Fang
BMC Genomics. 2012; 13: 122. Published online 2012 March 29. doi: 10.1186/1471-2164-13-122
PMCID:
PMC3353164
Abstract Full Text PDF–1.6M Supplementary Material
Identification and developmental profiling of conserved and novel microRNAs in Manduca sexta
Xiufeng Zhang, Yun Zheng, Guru Jagadeeswaran, Ren Ren, Ramanjulu Sunkar, Haobo Jiang
Insect Biochem Mol Biol. Author manuscript; available in PMC 2012 June 1.
Published in final edited form as: Insect Biochem Mol Biol. 2012 June; 42(6): 381–395. Published online 2012 March 1. doi: 10.1016/j.ibmb.2012.01.006
PMCID:
PMC3340478
Free in PMC on 2012/06/01
Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network
Jin Wang, Martin Haubrock, Kun-Ming Cao, Xu Hua, Chen-Yu Zhang, Edgar Wingender, Jie Li
BMC Syst Biol. 2011; 5: 199. Published online 2011 December 16. doi: 10.1186/1752-0509-5-199
PMCID:
PMC3262773
Abstract Full Text PDF–886K Supplementary Material
Alternative miRNA biogenesis pathways and the interpretation of core miRNA pathway mutants
Jr Shiuan Yang, Eric C. Lai
Mol Cell. Author manuscript; available in PMC 2012 September 16.
Published in final edited form as: Mol Cell. 2011 September 16; 43(6): 892–903. doi: 10.1016/j.molcel.2011.07.024
PMCID:
PMC3176435
Free in PMC on 2012/09/16
Testing hypotheses on the rate of molecular evolution in relation to gene expression using microRNAs
Yang Shen, Yang Lv, Lei Huang, Wensheng Liu, Ming Wen, Tian Tang, Rui Zhang, Eric Hungate, Suhua Shi, Chung-I Wu
Proc Natl Acad Sci U S A. 2011 September 20; 108(38): 15942–15947. Published online 2011 September 12. doi: 10.1073/pnas.1110098108
PMCID:
PMC3179107
Abstract Full Text PDF–250K Supplementary Material
Role of MicroRNAs in Insect Host–Microorganism Interactions
Sassan Asgari
Front Physiol. 2011; 2: 48. Prepublished online 2011 July 12. Published online 2011 August 15. doi: 10.3389/fphys.2011.00048
PMCID:
PMC3155871
Abstract Full Text PDF–1.3M
Mirtrons: microRNA biogenesis via splicing
Jakub O. Westholm, Eric C. Lai
Biochimie. Author manuscript; available in PMC 2012 November 1.
Published in final edited form as: Biochimie. 2011 November; 93(11): 1897–1904. Published online 2011 June 21. doi: 10.1016/j.biochi.2011.06.017
PMCID:
PMC3185189
Free in PMC on 2012/11/01
A novel computational framework for simultaneous integration of multiple types of genomic data to identify microRNA-gene regulatory modules
Shihua Zhang, Qingjiao Li, Juan Liu, Xianghong Jasmine Zhou
Bioinformatics. 2011 July 1; 27(13): i401–i409. Published online 2011 June 14. doi: 10.1093/bioinformatics/btr206
PMCID:
PMC3117336
Abstract Full Text Supplementary Material
Vive la différence: biogenesis and evolution of microRNAs in plants and animals
Michael J Axtell, Jakub O Westholm, Eric C Lai
Genome Biol. 2011; 12(4): 221. Published online 2011 April 28. doi: 10.1186/gb-2011-12-4-221
PMCID:
PMC3218855
Abstract Full Text PDF–567K
MiRPara: a SVM-based software tool for prediction of most probable microRNA coding regions in genome scale sequences
Yonggan Wu, Bo Wei, Haizhou Liu, Tianxian Li, Simon Rayner
BMC Bioinformatics. 2011; 12: 107. Published online 2011 April 19. doi: 10.1186/1471-2105-12-107
PMCID:
PMC3110143
Abstract Full Text PDF–917K Supplementary Material
Deep annotation of Drosophila melanogaster microRNAs yields insights into their processing, modification, and emergence
Eugene Berezikov, Nicolas Robine, Anastasia Samsonova, Jakub O. Westholm, Ammar Naqvi, Jui-Hung Hung, Katsutomo Okamura, Qi Dai, Diane Bortolamiol-Becet, Raquel Martin, Yongjun Zhao, Phillip D. Zamore, Gregory J. Hannon, Marco A. Marra, Zhiping Weng, Norbert Perrimon, Eric C. Lai
Genome Res. 2011 February; 21(2): 203–215. doi: 10.1101/gr.116657.110
PMCID:
PMC3032924
Abstract Full Text PDF–2.8M
Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans
Wei-Jen Chung, Phaedra Agius, Jakub O. Westholm, Michael Chen, Katsutomo Okamura, Nicolas Robine, Christina S. Leslie, Eric C. Lai
Genome Res. 2011 February; 21(2): 286–300. doi: 10.1101/gr.113050.110
PMCID:
PMC3032932
Abstract Full Text PDF–2.1M
Identification of Schistosoma mansoni microRNAs
Mariana C Simões, Jonathan Lee, Appolinaire Djikeng, Gustavo C Cerqueira, Adhemar Zerlotini, Rosiane A da Silva-Pereira, Andrew R Dalby, Philip LoVerde, Najib M El-Sayed, Guilherme Oliveira
BMC Genomics. 2011; 12: 47. Published online 2011 January 19. doi: 10.1186/1471-2164-12-47
PMCID:
PMC3034697
Abstract Full Text PDF–1.0M Supplementary Material
Mi-DISCOVERER: A bioinformatics tool for the detection of mi-RNA in human genome
Saadia Arshad, Asia Mumtaz, Freed Ahmad, Sadia Liaquat, Shahid Nadeem, Shahid Mehboob, Muhammad Afzal
Bioinformation. 2010; 5(6): 271–276. Published online 2010 November 27.
PMCID:
PMC3055698
Abstract Full Text PDF–330K Supplementary Material
A framework for automated enrichment of functionally significant inverted repeats in whole genomes
Cyriac Kandoth, Fikret Ercal, Ronald L Frank
BMC Bioinformatics. 2010; 11(Suppl 6): S20. Published online 2010 October 7. doi: 10.1186/1471-2105-11-S6-S20
PMCID:
PMC3026368
Abstract Full Text PDF–751K
Conserved vertebrate mir-451 provides a platform for Dicer-independent, Ago2-mediated microRNA biogenesis
Jr-Shiuan Yang, Thomas Maurin, Nicolas Robine, Kasper D. Rasmussen, Kate L. Jeffrey, Rohit Chandwani, Eirini P. Papapetrou, Michel Sadelain, Dónal O'Carroll, Eric C. Lai
Proc Natl Acad Sci U S A. 2010 August 24; 107(34): 15163–15168. Published online 2010 August 10. doi: 10.1073/pnas.1006432107
PMCID:
PMC2930549
Abstract Full Text PDF–2.5M Supplementary Material
DGCR8 recognizes primary transcripts of microRNAs through highly cooperative binding and formation of higher-order structures
Michael Faller, Daniel Toso, Michio Matsunaga, Ivo Atanasov, Rachel Senturia, Yanqiu Chen, Z. Hong Zhou, Feng Guo
RNA. 2010 August; 16(8): 1570–1583. doi: 10.1261/rna.2111310
PMCID:
PMC2905756
Abstract Full Text PDF–1.0M
The Fate of miRNA* Strand through Evolutionary Analysis: Implication for Degradation As Merely Carrier Strand or Potential Regulatory Molecule?
Li Guo, Zuhong Lu
PLoS One. 2010; 5(6): e11387. Published online 2010 June 30. doi: 10.1371/journal.pone.0011387
PMCID:
PMC2894941
Abstract Full Text PDF–1.7M Supplementary Material
microRNA biogenesis via splicing and exosome-mediated trimming in Drosophila
Alex S. Flynt, Jaclyn C. Greimann, Wei-Jen Chung, Christopher D. Lima, Eric C. Lai
Mol Cell. Author manuscript; available in PMC 2011 June 25.
Published in final edited form as: Mol Cell. 2010 June 25; 38(6): 900–907. doi: 10.1016/j.molcel.2010.06.014
PMCID:
PMC2904328
Abstract Full Text PDF–1.2M Supplementary Material
Diverse set of microRNAs are responsive to powdery mildew infection and heat stress in wheat (Triticum aestivum L.)
Mingming Xin, Yu Wang, Yingyin Yao, Chaojie Xie, Huiru Peng, Zhongfu Ni, Qixin Sun
BMC Plant Biol. 2010; 10: 123. Published online 2010 June 24. doi: 10.1186/1471-2229-10-123
PMCID:
PMC3095282
Abstract Full Text PDF–2.0M Supplementary Material
Large-Scale Expression Analysis Reveals Distinct MicroRNA Profiles at Different Stages of Human Neurodevelopment
Brandon Smith, Julie Treadwell, Dongling Zhang, Dao Ly, Iain McKinnell, P. Roy Walker, Marianna Sikorska
PLoS One. 2010; 5(6): e11109. Published online 2010 June 15. doi: 10.1371/journal.pone.0011109
PMCID:
PMC2886071
Abstract Full Text PDF–1.3M Supplementary Material
miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
David Hendrix, Michael Levine, Weiyang Shi
Genome Biol. 2010; 11(4): R39. Published online 2010 April 6. doi: 10.1186/gb-2010-11-4-r39
PMCID:
PMC2884542
Abstract Full Text PDF–1.3M Supplementary Material
Discovery of Novel MicroRNAs in Female Reproductive Tract Using Next Generation Sequencing
Chad J. Creighton, Ashley L. Benham, Huifeng Zhu, Mahjabeen F. Khan, Jeffrey G. Reid, Ankur K. Nagaraja, Michael D. Fountain, Jr, Olivia Dziadek, Derek Han, Lang Ma, Jong Kim, Shannon M. Hawkins, Matthew L. Anderson, Martin M. Matzuk, Preethi H. Gunaratne
PLoS One. 2010; 5(3): e9637. Published online 2010 March 10. doi: 10.1371/journal.pone.0009637
PMCID:
PMC2835764
Abstract Full Text PDF–414K Supplementary Material
Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
Rebecca L Skalsky, Dana L Vanlandingham, Frank Scholle, Stephen Higgs, Bryan R Cullen
BMC Genomics. 2010; 11: 119. Published online 2010 February 18. doi: 10.1186/1471-2164-11-119
PMCID:
PMC2834634
Abstract Full Text PDF–658K Supplementary Material
Deep sequencing of small RNA libraries reveals dynamic regulation of conserved and novel microRNAs and microRNA-stars during silkworm development
Guru Jagadeeswaran, Yun Zheng, Niranji Sumathipala, Haobo Jiang, Estela L Arrese, Jose L Soulages, Weixiong Zhang, Ramanjulu Sunkar
BMC Genomics. 2010; 11: 52. Published online 2010 January 20. doi: 10.1186/1471-2164-11-52
PMCID:
PMC2824724
Abstract Full Text PDF–2.8M Supplementary Material
Direct sequencing and expression analysis of a large number of miRNAs in Aedes aegypti and a multi-species survey of novel mosquito miRNAs
Song Li, Edward A Mead, Shaohui Liang, Zhijian Tu
BMC Genomics. 2009; 10: 581. Published online 2009 December 4. doi: 10.1186/1471-2164-10-581
PMCID:
PMC2797818
Abstract Full Text PDF–2.1M Supplementary Material
Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins
Francisco Merchan, Adnane Boualem, Martin Crespi, Florian Frugier
Genome Biol. 2009; 10(12): R136. Published online 2009 December 1. doi: 10.1186/gb-2009-10-12-r136
PMCID:
PMC2812943
Abstract Full Text PDF–966K Supplementary Material
miR-9a prevents apoptosis during wing development by repressing Drosophila LIM-only
Fernando Bejarano, Peter Smibert, Eric C. Lai
Dev Biol. Author manuscript; available in PMC 2011 February 1.
Published in final edited form as: Dev Biol. 2010 February 1; 338(1): 63–73. Published online 2009 November 26. doi: 10.1016/j.ydbio.2009.11.025
PMCID:
PMC2812678
Abstract Full Text PDF–7.3M Supplementary Material
Prediction of viral microRNA precursors based on human microRNA precursor sequence and structural features
Shiva Kumar, Faraz A Ansari, Vinod Scaria
Virol J. 2009; 6: 129. Published online 2009 August 20. doi: 10.1186/1743-422X-6-129
PMCID:
PMC2743665
Abstract Full Text PDF–404K
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