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Statistical methods for ranking differentially expressed genes
Per Broberg
Genome Biol. 2003; 4(6): R41. Published online 2003 May 29. doi: 10.1186/gb-2003-4-6-r41
PMCID:
PMC193620
Abstract Full Text PDF–1023K Supplementary Material
 Is Cited by the Following 12 Articles in this Archive:
MMP1 bimodal expression and differential response to inflammatory mediators is linked to promoter polymorphisms
Muna Affara, Benjamin J Dunmore, Deborah A Sanders, Nicola Johnson, Cristin G Print, D Stephen Charnock-Jones
BMC Genomics. 2011; 12: 43. Published online 2011 January 19. doi: 10.1186/1471-2164-12-43
PMCID:
PMC3040839
Abstract Full Text PDF–1.5M Supplementary Material
The role of the CCR1 receptor in the inflammatory response to tobacco smoke in a mouse model
Per-Ola Önnervik, Maria Lindahl, Naila Svitacheva, Martin Stämpfli, Kerstin Thim, Amir Smailagic, Robert Virtala, John D. Taylor
Inflamm Res. 2010 October; 59(10): 817–825. Published online 2010 April 13. doi: 10.1007/s00011-010-0193-5
PMCID:
PMC2933852
Abstract Full Text PDF–354K
Identifying Gene Interaction Enrichment for Gene Expression Data
Jigang Zhang, Jian Li, Hong-Wen Deng
PLoS One. 2009; 4(11): e8064. Published online 2009 November 30. doi: 10.1371/journal.pone.0008064
PMCID:
PMC2779493
Abstract Full Text PDF–206K
A New Test Statistic Based on Shrunken Sample Variance for Identifying Differentially Expressed Genes in Small Microarray Experiments
Akihiro Hirakawa, Yasunori Sato, Chikuma Hamada, Isao Yoshimura
Bioinform Biol Insights. 2008; 2: 145–156. Published online 2008 February 29.
PMCID:
PMC2735945
Abstract Full Text PDF–1.5M
Estimating the False Discovery Rate Using Mixed Normal Distribution for Identifying Differentially Expressed Genes in Microarray Data Analysis
Akihiro Hirakawa, Yasunori Sato, Takashi Sozu, Chikuma Hamada, Isao Yoshimura
Cancer Inform. 2007; 3: 140–148. Published online 2008 January 22.
PMCID:
PMC2675830
Abstract Full Text PDF–322K
Evaluation of Two Outlier-Detection-Based Methods for Detecting Tissue-Selective Genes from Microarray Data
Koji Kadota, Tomokazu Konishi, Kentaro Shimizu
Gene Regul Syst Bio. 2007; 1: 9–15. Published online 2007 May 1.
PMCID:
PMC2759137
Abstract Full Text PDF–371K Supplementary Material
Semi-supervised discovery of differential genes
Shigeyuki Oba, Shin lshii
BMC Bioinformatics. 2006; 7: 414. Published online 2006 September 18. doi: 10.1186/1471-2105-7-414
PMCID:
PMC1584253
Abstract Full Text PDF–557K
Generalization of DNA microarray dispersion properties: microarray equivalent of t-distribution
Jaroslav P Novak, Seon-Young Kim, Jun Xu, Olga Modlich, David J Volsky, David Honys, Joan L Slonczewski, Douglas A Bell, Fred R Blattner, Eduardo Blumwald, Marjan Boerma, Manuel Cosio, Zoran Gatalica, Marian Hajduch, Juan Hidalgo, Roderick R McInnes, Merrill C Miller III, Milena Penkowa, Michael S Rolph, Jordan Sottosanto, Rene St-Arnaud, Michael J Szego, David Twell, Charles Wang
Biol Direct. 2006; 1: 27. Published online 2006 September 7. doi: 10.1186/1745-6150-1-27
PMCID:
PMC1586001
Abstract Full Text PDF–1.3M Supplementary Material
A comparative review of estimates of the proportion unchanged genes and the false discovery rate
Per Broberg
BMC Bioinformatics. 2005; 6: 199. Published online 2005 August 8. doi: 10.1186/1471-2105-6-199
PMCID:
PMC1199583
Abstract Full Text PDF–790K Supplementary Material
Integrative analysis of multiple gene expression profiles with quality-adjusted effect size models
Pingzhao Hu, Celia MT Greenwood, Joseph Beyene
BMC Bioinformatics. 2005; 6: 128. Published online 2005 May 27. doi: 10.1186/1471-2105-6-128
PMCID:
PMC1173085
Abstract Full Text PDF–321K Supplementary Material
Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset
Sung E Choe, Michael Boutros, Alan M Michelson, George M Church, Marc S Halfon
Genome Biol. 2005; 6(2): R16. Published online 2005 January 28. doi: 10.1186/gb-2005-6-2-r16
PMCID:
PMC551536
Abstract Full Text PDF–3.0M Supplementary Material
Improving the statistical detection of regulated genes from microarray data using intensity-based variance estimation
Jason Comander, Sripriya Natarajan, Michael A Gimbrone, Jr, Guillermo García-Cardeña
BMC Genomics. 2004; 5: 17. Published online 2004 February 27. doi: 10.1186/1471-2164-5-17
PMCID:
PMC400250
Abstract Full Text PDF–899K
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