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A method to assess compositional bias in biological sequences and its application to prion-like glutamine/asparagine-rich domains in eukaryotic proteomes
Paul M Harrison, Mark Gerstein
Genome Biol. 2003; 4(6): R40. Published online 2003 May 30. doi: 10.1186/gb-2003-4-6-r40
PMCID:
PMC193619
Abstract Full Text PDF–267K Supplementary Material

Is Cited by the Following 16 Articles in this Archive:

Perfecting precision of predicting prion propensity
Daniel C. Masison
Proc Natl Acad Sci U S A. 2012 April 24; 109(17): 6362–6363. Published online 2012 April 12. doi: 10.1073/pnas.1203767109
PMCID:
PMC3340077
Free in PMC on 2012/10/24
PrionHome: A Database of Prions and Other Sequences Relevant to Prion Phenomena
Djamel Harbi, Marimuthu Parthiban, Deena M. A. Gendoo, Sepehr Ehsani, Manish Kumar, Gerold Schmitt-Ulms, Ramanathan Sowdhamini, Paul M. Harrison
PLoS One. 2012; 7(2): e31785. Published online 2012 February 20. doi: 10.1371/journal.pone.0031785
PMCID:
PMC3282748
Abstract Full Text PDF–573K
A Small, Glutamine-Free Domain Propagates the [SWI+] Prion in Budding Yeast
Emily T. Crow, Zhiqiang Du, Liming Li
Mol Cell Biol. 2011 August; 31(16): 3436–3444. doi: 10.1128/MCB.05338-11
PMCID:
PMC3147804
Abstract Full Text PDF–1.5M
Opposing effects of glutamine and asparagine govern prion formation by intrinsically disordered proteins
Randal Halfmann, Simon Alberti, Rajaraman Krishnan, Nicholas Lyle, Charles W. O’Donnell, Oliver D. King, Bonnie Berger, Rohit V. Pappu, Susan Lindquist
Mol Cell. Author manuscript; available in PMC 2012 July 8.
Published in final edited form as: Mol Cell. 2011 July 8; 43(1): 72–84. doi: 10.1016/j.molcel.2011.05.013
PMCID:
PMC3132398
Free in PMC on 2012/07/08
A Drosophila model of the neurodegenerative disease SCA17 reveals a role of RBP-J/Su(H) in modulating the pathological outcome
Jie Ren, Anil G. Jegga, Minlu Zhang, Jingyuan Deng, Junbo Liu, Christopher B. Gordon, Bruce J. Aronow, Long J. Lu, Bo Zhang, Jun Ma
Hum Mol Genet. 2011 September 1; 20(17): 3424–3436. Published online 2011 June 8. doi: 10.1093/hmg/ddr251
PMCID:
PMC3153307
Free in PMC on 2012/09/01
LPS-annotate: complete annotation of compositionally biased regions in the protein knowledgebase
Djamel Harbi, Manish Kumar, Paul M. Harrison
Database (Oxford) 2011; 2011: baq031. Published online 2011 January 7. doi: 10.1093/database/baq031
PMCID:
PMC3017391
Abstract Full Text PDF–810K
Interaction with Polyglutamine Aggregates Reveals a Q/N-rich Domain in TDP-43
Rodrigo A. Fuentealba, Maria Udan, Shaughn Bell, Iga Wegorzewska, Jieya Shao, Marc I. Diamond, Conrad C. Weihl, Robert H. Baloh
J Biol Chem. 2010 August 20; 285(34): 26304–26314. Published online 2010 June 16. doi: 10.1074/jbc.M110.125039
PMCID:
PMC2924052
Abstract Full Text Supplementary Material
Non-Mendelian determinant [ISP+] in yeast is a nuclear-residing prion form of the global transcriptional regulator Sfp1
Tatyana Rogoza, Alexander Goginashvili, Sofia Rodionova, Maxim Ivanov, Olga Viktorovskaya, Alexander Rubel, Kirill Volkov, Ludmila Mironova
Proc Natl Acad Sci U S A. 2010 June 8; 107(23): 10573–10577. Published online 2010 May 24. doi: 10.1073/pnas.1005949107
PMCID:
PMC2890785
Abstract Full Text PDF–844K
Short and long-term memory are modulated by multiple isoforms of the fragile X mental retardation protein
Paromita Banerjee, Brian P. Schoenfeld, Aaron J. Bell, Catherine H. Choi, Michael P. Bradley, Paul Hinchey, Maria Kollaros, Jae H. Park, Sean M.J. McBride, Thomas C. Dockendorff
J Neurosci. Author manuscript; available in PMC 2010 November 12.
Published in final edited form as: J Neurosci. 2010 May 12; 30(19): 6782–6792. doi: 10.1523/JNEUROSCI.6369-09.2010
PMCID:
PMC2880182
Abstract Full Text PDF–2.0M Supplementary Material
Prions, protein homeostasis, and phenotypic diversity
Randal Halfmann, Simon Alberti, Susan Lindquist
Trends Cell Biol. Author manuscript; available in PMC 2010 September 1.
Published in final edited form as: Trends Cell Biol. 2010 March; 20(3): 125–133. Published online 2010 January 12. doi: 10.1016/j.tcb.2009.12.003
PMCID:
PMC2846750
Abstract Full Text PDF–1.2M
Compositional Determinants of Prion Formation in Yeast
James A. Toombs, Blake R. McCarty, Eric D. Ross
Mol Cell Biol. 2010 January; 30(1): 319–332. Published online 2009 November 2. doi: 10.1128/MCB.01140-09
PMCID:
PMC2798286
Abstract Full Text PDF–2.3M
Prion Dynamics and the Quest for the Genetic Determinant in Protein-Only Inheritance
Suzanne S. Sindi, Tricia R. Serio
Curr Opin Microbiol. Author manuscript; available in PMC 2010 December 1.
Published in final edited form as: Curr Opin Microbiol. 2009 December; 12(6): 623–630. Published online 2009 October 26. doi: 10.1016/j.mib.2009.09.003
PMCID:
PMC2846611
Abstract Full Text PDF–1.1M
The Schizosaccharomyces pombe Hsp104 Disaggregase Is Unable to Propagate the [PSI+] Prion
Patrick Sénéchal, Geneviève Arseneault, Alexandre Leroux, Susan Lindquist, Luis A. Rokeach
PLoS One. 2009; 4(9): e6939. Published online 2009 September 11. doi: 10.1371/journal.pone.0006939
PMCID:
PMC2736384
Abstract Full Text PDF–490K Supplementary Material
A systematic survey identifies prions and illuminates sequence features of prionogenic proteins
Simon Alberti, Randal Halfmann, Oliver King, Atul Kapila, Susan Lindquist
Cell. Author manuscript; available in PMC 2009 October 3.
Published in final edited form as: Cell. 2009 April 3; 137(1): 146–158. doi: 10.1016/j.cell.2009.02.044
PMCID:
PMC2683788
Abstract Full Text PDF–5.2M Supplementary Material
Propagation of the [PIN+] prion by fragments of Rnq1 fused to GFP
Yakov A. Vitrenko, Mariana Pavon E., Stephen I. Stone, Susan W. Liebman
Curr Genet. Author manuscript; available in PMC 2008 December 9.
Published in final edited form as: Curr Genet. 2007 May; 51(5): 309–319. Published online 2007 April 6. doi: 10.1007/s00294-007-0127-0
PMCID:
PMC2597802
Abstract Full Text PDF–2.7M Supplementary Material
Exhaustive assignment of compositional bias reveals universally prevalent biased regions: analysis of functional associations in human and Drosophila
Paul M Harrison
BMC Bioinformatics. 2006; 7: 441. Published online 2006 October 10. doi: 10.1186/1471-2105-7-441
PMCID:
PMC1618407
Abstract Full Text PDF–3.0M
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