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A method to assess compositional bias in biological sequences and its application to prion-like glutamine/asparagine-rich domains in eukaryotic proteomes
Paul M Harrison, Mark Gerstein
Genome Biol. 2003; 4(6): R40. Published online 2003 May 30. doi: 10.1186/gb-2003-4-6-r40
PMCID:
PMC193619
Abstract Full Text PDF–267K Supplementary Material
 Is Cited by the Following 12 Articles in this Archive:
A Small, Glutamine-Free Domain Propagates the [SWI+] Prion in Budding Yeast
Emily T. Crow, Zhiqiang Du, Liming Li
Mol Cell Biol. 2011 August; 31(16): 3436–3444. doi: 10.1128/MCB.05338-11
PMCID:
PMC3147804
Abstract Full Text PDF–1.5M
LPS-annotate: complete annotation of compositionally biased regions in the protein knowledgebase
Djamel Harbi, Manish Kumar, Paul M. Harrison
Database (Oxford) 2011; 2011: baq031. Published online 2011 January 7. doi: 10.1093/database/baq031
PMCID:
PMC3017391
Abstract Full Text PDF–810K
Interaction with Polyglutamine Aggregates Reveals a Q/N-rich Domain in TDP-43
Rodrigo A. Fuentealba, Maria Udan, Shaughn Bell, Iga Wegorzewska, Jieya Shao, Marc I. Diamond, Conrad C. Weihl, Robert H. Baloh
J Biol Chem. 2010 August 20; 285(34): 26304–26314. Published online 2010 June 16. doi: 10.1074/jbc.M110.125039
PMCID:
PMC2924052
Abstract Full Text Supplementary Material
Non-Mendelian determinant [ISP+] in yeast is a nuclear-residing prion form of the global transcriptional regulator Sfp1
Tatyana Rogoza, Alexander Goginashvili, Sofia Rodionova, Maxim Ivanov, Olga Viktorovskaya, Alexander Rubel, Kirill Volkov, Ludmila Mironova
Proc Natl Acad Sci U S A. 2010 June 8; 107(23): 10573–10577. Published online 2010 May 24. doi: 10.1073/pnas.1005949107
PMCID:
PMC2890785
Abstract Full Text PDF–844K
Short and long-term memory are modulated by multiple isoforms of the fragile X mental retardation protein
Paromita Banerjee, Brian P. Schoenfeld, Aaron J. Bell, Catherine H. Choi, Michael P. Bradley, Paul Hinchey, Maria Kollaros, Jae H. Park, Sean M.J. McBride, Thomas C. Dockendorff
J Neurosci. Author manuscript; available in PMC 2010 November 12.
Published in final edited form as: J Neurosci. 2010 May 12; 30(19): 6782–6792. doi: 10.1523/JNEUROSCI.6369-09.2010
PMCID:
PMC2880182
Abstract Full Text PDF–2.0M Supplementary Material
Prions, protein homeostasis, and phenotypic diversity
Randal Halfmann, Simon Alberti, Susan Lindquist
Trends Cell Biol. Author manuscript; available in PMC 2010 September 1.
Published in final edited form as: Trends Cell Biol. 2010 March; 20(3): 125–133. Published online 2010 January 12. doi: 10.1016/j.tcb.2009.12.003
PMCID:
PMC2846750
Abstract Full Text PDF–1.2M
Compositional Determinants of Prion Formation in Yeast
James A. Toombs, Blake R. McCarty, Eric D. Ross
Mol Cell Biol. 2010 January; 30(1): 319–332. Published online 2009 November 2. doi: 10.1128/MCB.01140-09
PMCID:
PMC2798286
Abstract Full Text PDF–2.3M
Prion Dynamics and the Quest for the Genetic Determinant in Protein-Only Inheritance
Suzanne S. Sindi, Tricia R. Serio
Curr Opin Microbiol. Author manuscript; available in PMC 2010 December 1.
Published in final edited form as: Curr Opin Microbiol. 2009 December; 12(6): 623–630. Published online 2009 October 26. doi: 10.1016/j.mib.2009.09.003
PMCID:
PMC2846611
Abstract Full Text PDF–1.1M
The Schizosaccharomyces pombe Hsp104 Disaggregase Is Unable to Propagate the [PSI+] Prion
Patrick Sénéchal, Geneviève Arseneault, Alexandre Leroux, Susan Lindquist, Luis A. Rokeach
PLoS One. 2009; 4(9): e6939. Published online 2009 September 11. doi: 10.1371/journal.pone.0006939
PMCID:
PMC2736384
Abstract Full Text PDF–490K Supplementary Material
A systematic survey identifies prions and illuminates sequence features of prionogenic proteins
Simon Alberti, Randal Halfmann, Oliver King, Atul Kapila, Susan Lindquist
Cell. Author manuscript; available in PMC 2009 October 3.
Published in final edited form as: Cell. 2009 April 3; 137(1): 146–158. doi: 10.1016/j.cell.2009.02.044
PMCID:
PMC2683788
Abstract Full Text PDF–5.2M Supplementary Material
Propagation of the [PIN+] prion by fragments of Rnq1 fused to GFP
Yakov A. Vitrenko, Mariana Pavon E., Stephen I. Stone, Susan W. Liebman
Curr Genet. Author manuscript; available in PMC 2008 December 9.
Published in final edited form as: Curr Genet. 2007 May; 51(5): 309–319. Published online 2007 April 6. doi: 10.1007/s00294-007-0127-0
PMCID:
PMC2597802
Abstract Full Text PDF–2.7M Supplementary Material
Exhaustive assignment of compositional bias reveals universally prevalent biased regions: analysis of functional associations in human and Drosophila
Paul M Harrison
BMC Bioinformatics. 2006; 7: 441. Published online 2006 October 10. doi: 10.1186/1471-2105-7-441
PMCID:
PMC1618407
Abstract Full Text PDF–3.0M
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