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Horizontally transferred genes in plant-parasitic nematodes: a high-throughput genomic approach
Elizabeth H Scholl, Jeffrey L Thorne, James P McCarter, David Mck Bird
Genome Biol. 2003; 4(6): R39. Published online 2003 May 19. doi: 10.1186/gb-2003-4-6-r39
PMCID:
PMC193618
Abstract Full Text PDF–261K Supplementary Material
 Is Cited by the Following 16 Articles in this Archive:
Computational and phylogenetic validation of nematode horizontal gene transfer
Elizabeth H Scholl, David McK Bird
BMC Biol. 2011; 9: 9. Published online 2011 February 22. doi: 10.1186/1741-7007-9-9
PMCID:
PMC3042989
Abstract Full Text PDF–413K
Transcriptional profiling of trait deterioration in the insect pathogenic nematode Heterorhabditis bacteriophora
Bishwo N Adhikari, Chin-Yo Lin, Xiaodong Bai, Todd A Ciche, Parwinder S Grewal, Adler R Dillman, John M Chaston, David I Shapiro-Ilan, Anwar L Bilgrami, Randy Gaugler, Paul W Sternberg, Byron J Adams
BMC Genomics. 2009; 10: 609. Published online 2009 December 15. doi: 10.1186/1471-2164-10-609
PMCID:
PMC2805696
Abstract Full Text PDF–706K Supplementary Material
Analysis of expressed sequence tags and identification of genes encoding cell-wall-degrading enzymes from the fungivorous nematode Aphelenchus avenae
Nurul Karim, John T Jones, Hiroaki Okada, Taisei Kikuchi
BMC Genomics. 2009; 10: 525. Published online 2009 November 16. doi: 10.1186/1471-2164-10-525
PMCID:
PMC2784482
Abstract Full Text PDF–927K Supplementary Material
Transcriptomic analysis of the entomopathogenic nematode Heterorhabditis bacteriophora TTO1
Xiaodong Bai, Byron J Adams, Todd A Ciche, Sandra Clifton, Randy Gaugler, Saskia A Hogenhout, John Spieth, Paul W Sternberg, Richard K Wilson, Parwinder S Grewal
BMC Genomics. 2009; 10: 205. Published online 2009 April 30. doi: 10.1186/1471-2164-10-205
PMCID:
PMC2686736
Abstract Full Text PDF–633K Supplementary Material
Sequence mining and transcript profiling to explore cyst nematode parasitism
Axel A Elling, Makedonka Mitreva, Xiaowu Gai, John Martin, Justin Recknor, Eric L Davis, Richard S Hussey, Dan Nettleton, James P McCarter, Thomas J Baum
BMC Genomics. 2009; 10: 58. Published online 2009 January 30. doi: 10.1186/1471-2164-10-58
PMCID:
PMC2640417
Abstract Full Text PDF–1.5M Supplementary Material
The secret(ion) life of worms
David McK Bird, Charles H Opperman
Genome Biol. 2009; 10(1): 205. Published online 2009 January 28. doi: 10.1186/gb-2009-10-1-205
PMCID:
PMC2687784
Abstract Full Text PDF–325K
Horizontal gene transfer of the algal nuclear gene psbO to the photosynthetic sea slug Elysia chlorotica
Mary E. Rumpho, Jared M. Worful, Jungho Lee, Krishna Kannan, Mary S. Tyler, Debashish Bhattacharya, Ahmed Moustafa, James R. Manhart
Proc Natl Acad Sci U S A. 2008 November 18; 105(46): 17867–17871. Published online 2008 November 11. doi: 10.1073/pnas.0804968105
PMCID:
PMC2584685
Abstract Full Text PDF–975K Supplementary Material
Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
Charles H. Opperman, David M. Bird, Valerie M. Williamson, Dan S. Rokhsar, Mark Burke, Jonathan Cohn, John Cromer, Steve Diener, Jim Gajan, Steve Graham, T. D. Houfek, Qingli Liu, Therese Mitros, Jennifer Schaff, Reenah Schaffer, Elizabeth Scholl, Bryon R. Sosinski, Varghese P. Thomas, Eric Windham
Proc Natl Acad Sci U S A. 2008 September 30; 105(39): 14802–14807. Published online 2008 September 22. doi: 10.1073/pnas.0805946105
PMCID:
PMC2547418
Abstract Full Text PDF–435K Supplementary Material
Concerted gene recruitment in early plant evolution
Jinling Huang, J Peter Gogarten
Genome Biol. 2008; 9(7): R109. Published online 2008 July 8. doi: 10.1186/gb-2008-9-7-r109
PMCID:
PMC2530860
Abstract Full Text PDF–402K Supplementary Material
Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants
Todd J Barkman, Joel R McNeal, Seok-Hong Lim, Gwen Coat, Henrietta B Croom, Nelson D Young, Claude W dePamphilis
BMC Evol Biol. 2007; 7: 248. Published online 2007 December 21. doi: 10.1186/1471-2148-7-248
PMCID:
PMC2234419
Abstract Full Text PDF–3.5M Supplementary Material
Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment
Guénola Ricard, Neil R McEwan, Bas E Dutilh, Jean-Pierre Jouany, Didier Macheboeuf, Makoto Mitsumori, Freda M McIntosh, Tadeusz Michalowski, Takafumi Nagamine, Nancy Nelson, Charles J Newbold, Eli Nsabimana, Akio Takenaka, Nadine A Thomas, Kazunari Ushida, Johannes HP Hackstein, Martijn A Huynen
BMC Genomics. 2006; 7: 22. Published online 2006 February 10. doi: 10.1186/1471-2164-7-22
PMCID:
PMC1413528
Abstract Full Text PDF–1.2M Supplementary Material
TreeFam: a curated database of phylogenetic trees of animal gene families
Heng Li, Avril Coghlan, Jue Ruan, Lachlan James Coin, Jean-Karim Hériché, Lara Osmotherly, Ruiqiang Li, Tao Liu, Zhang Zhang, Lars Bolund, Gane Ka-Shu Wong, Weimou Zheng, Paramvir Dehal, Jun Wang, Richard Durbin
Nucleic Acids Res. 2006 January 1; 34(Database issue): D572–D580. Published online 2005 December 28. doi: 10.1093/nar/gkj118
PMCID:
PMC1347480
Abstract Full Text PDF–413K Supplementary Material
Phylogenetic Analysis of Pasteuria penetrans by Use of Multiple Genetic Loci
Lauren Charles, Ignazio Carbone, Keith G. Davies, David Bird, Mark Burke, Brian R. Kerry, Charles H. Opperman
J Bacteriol. 2005 August; 187(16): 5700–5708. doi: 10.1128/JB.187.16.5700-5708.2005
PMCID:
PMC1196054
Abstract Full Text PDF–319K
Molecular and biochemical characterization of an endo-β-1,3-glucanase from the pinewood nematode Bursaphelenchus xylophilus acquired by horizontal gene transfer from bacteria
Taisei Kikuchi, Hajime Shibuya, John T. Jones
Biochem J. 2005 July 1; 389(Pt 1): 117–125. Prepublished online 2005 February 23. Published online 2005 June 21. doi: 10.1042/BJ20042042
PMCID:
PMC1184544
Abstract Full Text PDF–606K
Widespread presence of "bacterial-like" PPP phosphatases in eukaryotes
Alexandra V Andreeva, Mikhail A Kutuzov
BMC Evol Biol. 2004; 4: 47. Published online 2004 November 19. doi: 10.1186/1471-2148-4-47
PMCID:
PMC535813
Abstract Full Text PDF–495K Supplementary Material
Comparative Genomics of Gene Expression in the Parasitic and Free-Living Nematodes Strongyloides stercoralis and Caenorhabditis elegans
Makedonka Mitreva, James P. McCarter, John Martin, Mike Dante, Todd Wylie, Brandi Chiapelli, Deana Pape, Sandra W. Clifton, Thomas B. Nutman, Robert H. Waterston
Genome Res. 2004 February; 14(2): 209–220. doi: 10.1101/gr.1524804
PMCID:
PMC327096
Abstract Full Text PDF–338K
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