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The mosaic structure of the symbiotic plasmid of Rhizobium etli CFN42 and its relation to other symbiotic genome compartments
Víctor González, Patricia Bustos, Miguel A Ramírez-Romero, Arturo Medrano-Soto, Heladia Salgado, Ismael Hernández-González, Juan Carlos Hernández-Celis, Verónica Quintero, Gabriel Moreno-Hagelsieb, Lourdes Girard, Oscar Rodríguez, Margarita Flores, Miguel A Cevallos, Julio Collado-Vides, David Romero, Guillermo Dávila
Genome Biol. 2003; 4(6): R36. Published online 2003 May 13. doi: 10.1186/gb-2003-4-6-r36
PMCID:
PMC193615
Abstract Full Text PDF–521K Supplementary Material

Is Cited by the Following 25 Articles in this Archive:

Genomic lineages of Rhizobium etli revealed by the extent of nucleotide polymorphisms and low recombination
José L Acosta, Luis E Eguiarte, Rosa I Santamaría, Patricia Bustos, Pablo Vinuesa, Esperanza Martínez-Romero, Guillermo Dávila, Víctor González
BMC Evol Biol. 2011; 11: 305. Published online 2011 October 17. doi: 10.1186/1471-2148-11-305
PMCID:
PMC3215678
Abstract Full Text PDF–856K Supplementary Material
The conjugative plasmid of a bean-nodulating Sinorhizobium fredii strain is assembled from sequences of two Rhizobium plasmids and the chromosome of a Sinorhizobium strain
Laura Cervantes, Patricia Bustos, Lourdes Girard, Rosa Isela Santamaría, Guillermo Dávila, Pablo Vinuesa, David Romero, Susana Brom
BMC Microbiol. 2011; 11: 149. Published online 2011 June 25. doi: 10.1186/1471-2180-11-149
PMCID:
PMC3224233
Abstract Full Text PDF–678K Supplementary Material
Comparative genome analysis and genome-guided physiological analysis of Roseobacter litoralis
Daniela Kalhoefer, Sebastian Thole, Sonja Voget, Rüdiger Lehmann, Heiko Liesegang, Antje Wollher, Rolf Daniel, Meinhard Simon, Thorsten Brinkhoff
BMC Genomics. 2011; 12: 324. Published online 2011 June 21. doi: 10.1186/1471-2164-12-324
PMCID:
PMC3141670
Abstract Full Text PDF–4.7M Supplementary Material
Intragenomic diversity of Rhizobium leguminosarum bv. trifolii clover nodule isolates
Andrzej Mazur, Grażyna Stasiak, Jerzy Wielbo, Agnieszka Kubik-Komar, Monika Marek-Kozaczuk, Anna Skorupska
BMC Microbiol. 2011; 11: 123. Published online 2011 May 30. doi: 10.1186/1471-2180-11-123
PMCID:
PMC3123555
Abstract Full Text PDF–3.1M
Characterization of the NifA-RpoN Regulon in Rhizobium etli in Free Life and in Symbiosis with Phaseolus vulgaris
Emmanuel Salazar, J. Javier Díaz-Mejía, Gabriel Moreno-Hagelsieb, Gabriel Martínez-Batallar, Yolanda Mora, Jaime Mora, Sergio Encarnación
Appl Environ Microbiol. 2010 July; 76(13): 4510–4520. Published online 2010 May 7. doi: 10.1128/AEM.02007-09
PMCID:
PMC2897426
Abstract Full Text PDF–461K Supplementary Material
Analysis of the Mechanism of Action of the Antisense RNA That Controls the Replication of the repABC Plasmid p42d
Ramón Cervantes-Rivera, Cristina Romero-López, Alfredo Berzal-Herranz, Miguel A. Cevallos
J Bacteriol. 2010 July; 192(13): 3268–3278. Published online 2010 April 30. doi: 10.1128/JB.00118-10
PMCID:
PMC2897686
Abstract Full Text PDF–1.8M Supplementary Material
Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales
Fabíola M Carvalho, Rangel C Souza, Fernando G Barcellos, Mariangela Hungria, Ana Tereza R Vasconcelos
BMC Microbiol. 2010; 10: 37. Published online 2010 February 8. doi: 10.1186/1471-2180-10-37
PMCID:
PMC2907836
Abstract Full Text PDF–6.0M Supplementary Material
Conserved Symbiotic Plasmid DNA Sequences in the Multireplicon Pangenomic Structure of Rhizobium etli
Víctor González, José L. Acosta, Rosa I. Santamaría, Patricia Bustos, José L. Fernández, Ismael L. Hernández González, Rafael Díaz, Margarita Flores, Rafael Palacios, Jaime Mora, Guillermo Dávila
Appl Environ Microbiol. 2010 March; 76(5): 1604–1614. Published online 2010 January 4. doi: 10.1128/AEM.02039-09
PMCID:
PMC2832352
Abstract Full Text PDF–2.0M
Genetic Basis for Rhizobium etli CE3 O-Antigen O-Methylated Residues That Vary According to Growth Conditions
Kristylea J. Ojeda, Jodie M. Box, K. Dale Noel
J Bacteriol. 2010 February; 192(3): 679–690. Published online 2009 November 30. doi: 10.1128/JB.01154-09
PMCID:
PMC2812443
Abstract Full Text PDF–1.2M
Bioinformatics Resources for the Study of Gene Regulation in Bacteria
Julio Collado-Vides, Heladia Salgado, Enrique Morett, Socorro Gama-Castro, Verónica Jiménez-Jacinto, Irma Martínez-Flores, Alejandra Medina-Rivera, Luis Muñiz-Rascado, Martín Peralta-Gil, Alberto Santos-Zavaleta
J Bacteriol. 2009 January; 191(1): 23–31. Published online 2008 October 31. doi: 10.1128/JB.01017-08
PMCID:
PMC2612416
Full Text PDF–2.4M
A Common Genomic Framework for a Diverse Assembly of Plasmids in the Symbiotic Nitrogen Fixing Bacteria
Lisa C. Crossman, Santiago Castillo-Ramírez, Craig McAnnula, Luis Lozano, Georgios S. Vernikos, José L. Acosta, Zara F. Ghazoui, Ismael Hernández-González, Georgina Meakin, Alan W. Walker, Michael F. Hynes, J. Peter W. Young, J. Allan Downie, David Romero, Andrew W. B. Johnston, Guillermo Dávila, Julian Parkhill, Víctor González
PLoS ONE. 2008; 3(7): e2567. Published online 2008 July 2. doi: 10.1371/journal.pone.0002567
Correction in:
PLoS ONE. 2008; 3(8): 10.1371/annotation/4a58a9bd-7531-41d0-b101-53039a88c25b.
Correction in:
PLoS ONE. 2008; 3(8): 10.1371/annotation/8d8e2649-c772-4363-b70b-b242c42f505f.
PMCID:
PMC2434198
Abstract Full Text PDF–1.2M Supplementary Material Correction Correction
Transcriptional Interference and Repression Modulate the Conjugative Ability of the Symbiotic Plasmid of Rhizobium etli
Edgardo Sepúlveda, Daniel Pérez-Mendoza, Miguel A. Ramírez-Romero, María J. Soto, Isabel M. López-Lara, Otto Geiger, Juan Sanjuán, Susana Brom, David Romero
J Bacteriol. 2008 June; 190(12): 4189–4197. Published online 2008 April 18. doi: 10.1128/JB.00041-08
PMCID:
PMC2446766
Abstract Full Text PDF–472K Supplementary Material
Melanin-Based High-Throughput Screen for l-Tyrosine Production in Escherichia coli
Christine Nicole S. Santos, Gregory Stephanopoulos
Appl Environ Microbiol. 2008 February; 74(4): 1190–1197. Published online 2007 December 21. doi: 10.1128/AEM.02448-07
PMCID:
PMC2258594
Abstract Full Text PDF–472K
Development of Genomic Sciences in Mexico: A Good Start and a Long Way to Go
Rafael Palacios, Julio Collado-Vides
PLoS Comput Biol. 2007 September; 3(9): e143. Published online 2007 September 28. doi: 10.1371/journal.pcbi.0030143
PMCID:
PMC1994971
Full Text PDF–124K
Genomes of the Symbiotic Nitrogen-Fixing Bacteria of Legumes
Allyson M. MacLean, Turlough M. Finan, Michael J. Sadowsky
Plant Physiol. 2007 June; 144(2): 615–622. doi: 10.1104/pp.107.101634
PMCID:
PMC1914180
Full Text PDF–139K
The Relaxase of the Rhizobium etli Symbiotic Plasmid Shows nic Site cis-Acting Preference
Daniel Pérez-Mendoza, María Lucas, Socorro Muñoz, José A. Herrera-Cervera, José Olivares, Fernando de la Cruz, Juan Sanjuán
J Bacteriol. 2006 November; 188(21): 7488–7499. doi: 10.1128/JB.00701-06
PMCID:
PMC1636270
Abstract Full Text PDF–522K
The partitioned Rhizobium etli genome: Genetic and metabolic redundancy in seven interacting replicons
Víctor González, Rosa I. Santamaría, Patricia Bustos, Ismael Hernández-González, Arturo Medrano-Soto, Gabriel Moreno-Hagelsieb, Sarath Chandra Janga, Miguel A. Ramírez, Verónica Jiménez-Jacinto, Julio Collado-Vides, Guillermo Dávila
Proc Natl Acad Sci U S A. 2006 March 7; 103(10): 3834–3839. Published online 2006 February 27. doi: 10.1073/pnas.0508502103
PMCID:
PMC1383491
Abstract Full Text PDF–1.8M Supplementary Material
Identification of the rctA Gene, Which Is Required for Repression of Conjugative Transfer of Rhizobial Symbiotic Megaplasmids
Daniel Pérez-Mendoza, Edgardo Sepúlveda, Victoria Pando, Socorro Muñoz, Joaquina Nogales, José Olivares, Maria J. Soto, José A. Herrera-Cervera, David Romero, Susana Brom, Juan Sanjuán
J Bacteriol. 2005 November; 187(21): 7341–7350. doi: 10.1128/JB.187.21.7341-7350.2005
PMCID:
PMC1272987
Abstract Full Text PDF–207K Supplementary Material
Evolutionary, structural and functional relationships revealed by comparative analysis of syntenic genes in Rhizobiales
Gabriela Guerrero, Humberto Peralta, Alejandro Aguilar, Rafael Díaz, Miguel Angel Villalobos, Arturo Medrano-Soto, Jaime Mora
BMC Evol Biol. 2005; 5: 55. Published online 2005 October 17. doi: 10.1186/1471-2148-5-55
PMCID:
PMC1276791
Abstract Full Text PDF–1.9M Supplementary Material
Comparative proteomics using 2-D gel electrophoresis and mass spectrometry as tools to dissect stimulons and regulons in bacteria with sequenced or partially sequenced genomes
Sergio Encarnación, Magdalena Hernández, Gabriel Martínez-Batallar, Sandra Contreras, María del Carmen Vargas, Jaime Mora
Biol Proced Online. 2005; 7: 117–135. Published online 2005 August 11. doi: 10.1251/bpo110
PMCID:
PMC1190382
Abstract Full Text PDF–714K
Gene Conversion Tracts Associated with Crossovers in Rhizobium etli
Gustavo Santoyo, Jaime M. Martínez-Salazar, César Rodríguez, David Romero
J Bacteriol. 2005 June; 187(12): 4116–4126. doi: 10.1128/JB.187.12.4116-4126.2005
PMCID:
PMC1151741
Abstract Full Text PDF–173K
Deduction of probable events of lateral gene transfer through comparison of phylogenetic trees by recursive consolidation and rearrangement
Dave MacLeod, Robert L Charlebois, Ford Doolittle, Eric Bapteste
BMC Evol Biol. 2005; 5: 27. Published online 2005 April 8. doi: 10.1186/1471-2148-5-27
PMCID:
PMC1087482
Abstract Full Text PDF–710K
Transfer of the Symbiotic Plasmid of Rhizobium etli CFN42 Requires Cointegration with p42a, Which May Be Mediated by Site-Specific Recombination
Susana Brom, Lourdes Girard, Cristina Tun-Garrido, Alejandro García-de los Santos, Patricia Bustos, Víctor González, David Romero
J Bacteriol. 2004 November; 186(22): 7538–7548. doi: 10.1128/JB.186.22.7538-7548.2004
PMCID:
PMC524903
Abstract Full Text PDF–298K
Identification of Functional mob Regions in Rhizobium etli: Evidence for Self-Transmissibility of the Symbiotic Plasmid pRetCFN42d
Daniel Pérez-Mendoza, Ana Domínguez-Ferreras, Socorro Muñoz, María José Soto, José Olivares, Susana Brom, Lourdes Girard, José A. Herrera-Cervera, Juan Sanjuán
J Bacteriol. 2004 September; 186(17): 5753–5761. doi: 10.1128/JB.186.17.5753-5761.2004
PMCID:
PMC516833
Abstract Full Text PDF–961K
Engineering the nifH Promoter Region and Abolishing Poly-β-Hydroxybutyrate Accumulation in Rhizobium etli Enhance Nitrogen Fixation in Symbiosis with Phaseolus vulgaris
Humberto Peralta, Yolanda Mora, Emmanuel Salazar, Sergio Encarnación, Rafael Palacios, Jaime Mora
Appl Environ Microbiol. 2004 June; 70(6): 3272–3281. doi: 10.1128/AEM.70.6.3272-3281.2004
PMCID:
PMC427788
Abstract Full Text PDF–772K
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