Zhengdong D Zhang, Joel Rozowsky, Hugo YK Lam, Jiang Du, Michael Snyder, Mark Gerstein
Genome Biol. 2007; 8(5): R81. Published online 2007 May 14. doi: 10.1186/gb-2007-8-5-r81
- PMCID:
- PMC1929149
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Zhengdong D Zhang, Joel Rozowsky, Hugo YK Lam, Jiang Du, Michael Snyder, Mark Gerstein Genome Biol. 2007; 8(5): R81. Published online 2007 May 14. doi: 10.1186/gb-2007-8-5-r81
Fabien Cottier, Martine Raymond, Oliver Kurzai, Marianne Bolstad, Worraanong Leewattanapasuk, Claudia Jiménez-López, Michael C. Lorenz, Dominique Sanglard, Libuše Váchová, Norman Pavelka, Zdena Palková, Fritz A. Mühlschlegel PLoS Pathog. 2012 January; 8(1): e1002485. Published online 2012 January 12. doi: 10.1371/journal.ppat.1002485
Jose M. Muiño, Marlous Hoogstraat, Roeland C. H. J. van Ham, Aalt D. J. van Dijk Nucleic Acids Res. 2011 July 1; 39(Web Server issue): W524–W527. Published online 2011 May 24. doi: 10.1093/nar/gkr373
Sabrina Schubert, Katherine S. Barker, Sadri Znaidi, Sabrina Schneider, Franziska Dierolf, Nico Dunkel, Malika Aïd, Geneviève Boucher, P. David Rogers, Martine Raymond, Joachim Morschhäuser Antimicrob Agents Chemother. 2011 May; 55(5): 2212–2223. doi: 10.1128/AAC.01343-10
Ghia M. Euskirchen, Raymond K. Auerbach, Eugene Davidov, Tara A. Gianoulis, Guoneng Zhong, Joel Rozowsky, Nitin Bhardwaj, Mark B. Gerstein, Michael Snyder PLoS Genet. 2011 March; 7(3): e1002008. Published online 2011 March 3. doi: 10.1371/journal.pgen.1002008
Jianti Zheng, Denghui Xing, Xiaohui Wu, Yingjia Shen, Diana M. Kroll, Guoli Ji, Qingshun Quinn Li PLoS One. 2011; 6(2): e14719. Published online 2011 February 25. doi: 10.1371/journal.pone.0014719
Yiwen Chen, Clifford A Meyer, Tao Liu, Wei Li, Jun S Liu, Xiaole Shirley Liu Genome Biol. 2011; 12(2): R11. Published online 2011 February 1. doi: 10.1186/gb-2011-12-2-r11
Hao Wu, Hongkai Ji Bioinformatics. 2010 August 1; 26(15): 1864–1870. Published online 2010 June 15. doi: 10.1093/bioinformatics/btq314
Ranjit Kumar, Pratik Shah, Edwin Swiatlo, Shane C Burgess, Mark L Lawrence, Bindu Nanduri BMC Genomics. 2010; 11: 350. Published online 2010 June 3. doi: 10.1186/1471-2164-11-350
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Allon Canaan, Izhak Haviv, Alexander E. Urban, Vincent P. Schulz, Steve Hartman, Zhengdong Zhang, Dean Palejev, Albert B. Deisseroth, Jill Lacy, Michael Snyder, Mark Gerstein, Sherman M. Weissman Proc Natl Acad Sci U S A. 2009 December 29; 106(52): 22421–22426. Published online 2009 December 22. doi: 10.1073/pnas.0911676106
Li Ni, Can Bruce, Christopher Hart, Justine Leigh-Bell, Daniel Gelperin, Lara Umansky, Mark B. Gerstein, Michael Snyder Genes Dev. 2009 June 1; 23(11): 1351–1363. doi: 10.1101/gad.1781909
Sadri Znaidi, Katherine S. Barker, Sandra Weber, Anne-Marie Alarco, Teresa T. Liu, Geneviève Boucher, P. David Rogers, Martine Raymond Eukaryot Cell. 2009 June; 8(6): 806–820. Published online 2009 April 24. doi: 10.1128/EC.00002-09
Paul G. Giresi, Jason D. Lieb Methods. Author manuscript; available in PMC 2010 July 1. Published in final edited form as: Methods. 2009 July; 48(3): 233–239. Published online 2009 March 18. doi: 10.1016/j.ymeth.2009.03.003
Debayan Datta, Hongyu Zhao BMC Bioinformatics. 2009; 10: 23. Published online 2009 January 19. doi: 10.1186/1471-2105-10-23
Joel Rozowsky, Ghia Euskirchen, Raymond K. Auerbach, Zhengdong D. Zhang, Theodore Gibson, Robert Bjornson, Nicholas Carriero, Michael Snyder, Mark B. Gerstein Nat Biotechnol. Author manuscript; available in PMC 2010 August 20. Published in final edited form as: Nat Biotechnol. 2009 January; 27(1): 66–75. Published online 2009 January 4. doi: 10.1038/nbt.1518
Hongkai Ji, Hui Jiang, Wenxiu Ma, David S. Johnson, Richard M. Myers, Wing H. Wong Nat Biotechnol. Author manuscript; available in PMC 2009 May 1. Published in final edited form as: Nat Biotechnol. 2008 November; 26(11): 1293–1300. Published online 2008 November 2. doi: 10.1038/nbt.1505
Zhengdong D. Zhang, Joel Rozowsky, Michael Snyder, Joseph Chang, Mark Gerstein PLoS Comput Biol. 2008 August; 4(8): e1000158. Published online 2008 August 22. doi: 10.1371/journal.pcbi.1000158
Zheng Lian, Alexander Karpikov, Jin Lian, Milind C. Mahajan, Stephen Hartman, Mark Gerstein, Michael Snyder, Sherman M. Weissman Genome Res. 2008 August; 18(8): 1224–1237. doi: 10.1101/gr.075804.107
David S. Johnson, Wei Li, D. Benjamin Gordon, Arindam Bhattacharjee, Bo Curry, Jayati Ghosh, Leonardo Brizuela, Jason S. Carroll, Myles Brown, Paul Flicek, Christoph M. Koch, Ian Dunham, Mark Bieda, Xiaoqin Xu, Peggy J. Farnham, Philipp Kapranov, David A. Nix, Thomas R. Gingeras, Xinmin Zhang, Heather Holster, Nan Jiang, Roland D. Green, Jun S. Song, Scott A. McCuine, Elizabeth Anton, Loan Nguyen, Nathan D. Trinklein, Zhen Ye, Keith Ching, David Hawkins, Bing Ren, Peter C. Scacheri, Joel Rozowsky, Alexander Karpikov, Ghia Euskirchen, Sherman Weissman, Mark Gerstein, Michael Snyder, Annie Yang, Zarmik Moqtaderi, Heather Hirsch, Hennady P. Shulha, Yutao Fu, Zhiping Weng, Kevin Struhl, Richard M. Myers, Jason D. Lieb, X. Shirley Liu Genome Res. 2008 March; 18(3): 393–403. doi: 10.1101/gr.7080508
X. Shirley Liu PLoS Comput Biol. 2007 October; 3(10): e183. Published online 2007 October 26. doi: 10.1371/journal.pcbi.0030183
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