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cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers
Thomas Brody, Wayne Rasband, Kevin Baler, Alexander Kuzin, Mukta Kundu, Ward F Odenwald
Genome Biol. 2007; 8(5): R75. Published online 2007 May 9. doi: 10.1186/gb-2007-8-5-r75
PMCID:
PMC1929141
Abstract Full Text PDF–760K Supplementary Material

Is Cited by the Following 8 Articles in this Archive:

Identification of cis-Regulatory Elements in the dmyc Gene of Drosophila Melanogaster
Jasmine Kharazmi, Cameron Moshfegh, Thomas Brody
Gene Regul Syst Bio. 2012; 6: 15–42. Published online 2011 December 21. doi: 10.4137/GRSB.S8044
PMCID:
PMC3256997
Abstract Full Text PDF–5.8M Supplementary Material
Regulation of a Duplicated Locus: Drosophila sloppy paired is Replete with Functionally Overlapping Enhancers
Miki Fujioka, James B. Jaynes
Dev Biol. Author manuscript; available in PMC 2013 February 15.
Published in final edited form as: Dev Biol. 2012 February 15; 362(2): 309–319. Published online 2011 December 9. doi: 10.1016/j.ydbio.2011.12.001
PMCID:
PMC3265641
Free in PMC on 2013/02/15
Use of a Drosophila Genome-Wide Conserved Sequence Database to Identify Functionally Related cis-Regulatory Enhancers
Thomas Brody, Amarendra S. Yavatkar, Alexander Kuzin, Mukta Kundu, Leonard J. Tyson, Jermaine Ross, Tzu-Yang Lin, Chi-Hon Lee, Takeshi Awasaki, Tzumin Lee, Ward F. Odenwald
Dev Dyn. Author manuscript; available in PMC 2013 January 1.
Published in final edited form as: Dev Dyn. 2012 January; 241(1): 169–189. Published online 2011 August 30. doi: 10.1002/dvdy.22728
PMCID:
PMC3243966
Free in PMC on 2013/01/01
Functional analysis of conserved sequences within a temporally restricted neural precursor cell enhancer
Alexander Kuzin, Mukta Kundu, Thomas Brody, Ward F. Odenwald
Mech Dev. Author manuscript; available in PMC 2012 March 1.
Published in final edited form as: Mech Dev. 2011 MAR-APR; 128(3-4): 165–177. Published online 2011 February 16. doi: 10.1016/j.mod.2011.02.001
PMCID:
PMC3095431
Abstract Full Text PDF–1.1M Supplementary Material
Sequence conservation and combinatorial complexity of Drosophila neural precursor cell enhancers
Thomas Brody, Wayne Rasband, Kevin Baler, Alexander Kuzin, Mukta Kundu, Ward F Odenwald
BMC Genomics. 2008; 9: 371. Published online 2008 August 1. doi: 10.1186/1471-2164-9-371
PMCID:
PMC2529316
Abstract Full Text PDF–1.2M Supplementary Material
Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis
Amarendra S Yavatkar, Yong Lin, Jermaine Ross, Yang Fann, Thomas Brody, Ward F Odenwald
BMC Genomics. 2008; 9: 106. Published online 2008 February 28. doi: 10.1186/1471-2164-9-106
PMCID:
PMC2268679
Abstract Full Text PDF–1.0M
REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila
Marc S. Halfon, Steven M. Gallo, Casey M. Bergman
Nucleic Acids Res. 2008 January; 36(Database issue): D594–D598. Published online 2008 January. doi: 10.1093/nar/gkm876
PMCID:
PMC2238825
Abstract Full Text PDF–345K
Phylogenetic Footprinting Analysis in the Upstream Regulatory Regions of the Drosophila Enhancer of split Genes
Morgan L. Maeder, Benjamin J. Polansky, Bryanne E. Robson, Deborah A. Eastman
Genetics. 2007 November; 177(3): 1377–1394. doi: 10.1534/genetics.107.070425
PMCID:
PMC2147979
Abstract Full Text PDF–2.0M
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