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Towards the uniform distribution of null P values on Affymetrix microarrays
Anthony A Fodor, Timothy L Tickle, Christine Richardson
Genome Biol. 2007; 8(5): R69. Published online 2007 May 1. doi: 10.1186/gb-2007-8-5-r69
PMCID:
PMC1929139
Abstract Full Text PDF–6.8M Supplementary Material

Is Cited by the Following 8 Articles in this Archive:

Gene set enrichment analysis: performance evaluation and usage guidelines
Jui-Hung Hung, Tun-Hsiang Yang, Zhenjun Hu, Zhiping Weng, Charles DeLisi
Brief Bioinform. 2012 May; 13(3): 281–291. Published online 2011 September 7. doi: 10.1093/bib/bbr049
PMCID:
PMC3357488
Free in PMC on 2013/05/01
Parallel multiplicity and error discovery rate (EDR) in microarray experiments
Wayne Wenzhong Xu, Clay J Carter
BMC Bioinformatics. 2010; 11: 465. Published online 2010 September 16. doi: 10.1186/1471-2105-11-465
PMCID:
PMC2955048
Abstract Full Text PDF–977K Supplementary Material
Preferred analysis methods for Affymetrix GeneChips. II. An expanded, balanced, wholly-defined spike-in dataset
Qianqian Zhu, Jeffrey C Miecznikowski, Marc S Halfon
BMC Bioinformatics. 2010; 11: 285. Published online 2010 May 27. doi: 10.1186/1471-2105-11-285
PMCID:
PMC2897828
Abstract Full Text PDF–5.1M Supplementary Material
Comments on the analysis of unbalanced microarray data
Kathleen F. Kerr
Bioinformatics. 2009 August 15; 25(16): 2035–2041. Published online 2009 June 15. doi: 10.1093/bioinformatics/btp363
PMCID:
PMC2732368
Abstract Full Text PDF–1.0M Supplementary Material
Statistical Model to Analyze Quantitative Proteomics Data Obtained by 18O/16O Labeling and Linear Ion Trap Mass Spectrometry: Application to the Study of Vascular Endothelial Growth Factor-induced Angiogenesis in Endothelial Cells
Inmaculada Jorge, Pedro Navarro, Pablo Martínez-Acedo, Estefanía Núñez, Horacio Serrano, Arántzazu Alfranca, Juan Miguel Redondo, Jesús Vázquez
Mol Cell Proteomics. 2009 May; 8(5): 1130–1149. doi: 10.1074/mcp.M800260-MCP200
PMCID:
PMC2689778
Abstract Full Text Supplementary Material
Determining gene expression on a single pair of microarrays
Robert W Reid, Anthony A Fodor
BMC Bioinformatics. 2008; 9: 489. Published online 2008 November 21. doi: 10.1186/1471-2105-9-489
PMCID:
PMC2605475
Abstract Full Text PDF–453K Supplementary Material
Background correction using dinucleotide affinities improves the performance of GCRMA
Raad Z Gharaibeh, Anthony A Fodor, Cynthia J Gibas
BMC Bioinformatics. 2008; 9: 452. Published online 2008 October 23. doi: 10.1186/1471-2105-9-452
PMCID:
PMC2579310
Abstract Full Text PDF–454K Supplementary Material
A comprehensive re-analysis of the Golden Spike data: Towards a benchmark for differential expression methods
Richard D Pearson
BMC Bioinformatics. 2008; 9: 164. Published online 2008 March 26. doi: 10.1186/1471-2105-9-164
PMCID:
PMC2324099
Abstract Full Text PDF–473K Supplementary Material
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