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Identification of conserved gene expression features between murine mammary carcinoma models and human breast tumors
Jason I Herschkowitz, Karl Simin, Victor J Weigman, Igor Mikaelian, Jerry Usary, Zhiyuan Hu, Karen E Rasmussen, Laundette P Jones, Shahin Assefnia, Subhashini Chandrasekharan, Michael G Backlund, Yuzhi Yin, Andrey I Khramtsov, Roy Bastein, John Quackenbush, Robert I Glazer, Powel H Brown, Jeffrey E Green, Levy Kopelovich, Priscilla A Furth, Juan P Palazzo, Olufunmilayo I Olopade, Philip S Bernard, Gary A Churchill, Terry Van Dyke, Charles M Perou
Genome Biol. 2007; 8(5): R76. Published online 2007 May 10. doi: 10.1186/gb-2007-8-5-r76
PMCID:
PMC1929138
Abstract Full Text PDF–3.0M Supplementary Material

Is Cited by the Following 138 Articles in this Archive:

Imaging tumor-stroma interactions during chemotherapy reveals contributions of the microenvironment to resistance
Elizabeth S. Nakasone, Hanne A. Askautrud, Tim Kees, Jae-Hyun Park, Vicki Plaks, Andrew J. Ewald, Miriam Fein, Morten G. Rasch, Ying-Xim Tan, Jing Qiu, Juwon Park, Pranay Sinha, Mina J. Bissell, Eirik Frengen, Zena Werb, Mikala Egeblad
Cancer Cell. Author manuscript; available in PMC 2013 April 17.
Published in final edited form as: Cancer Cell. 2012 April 17; 21(4): 488–503. doi: 10.1016/j.ccr.2012.02.017
PMCID:
PMC3332002
Free in PMC on 2013/04/17
Derivation of Myoepithelial Progenitor Cells from Bipotent Mammary Stem/Progenitor Cells
Xiangshan Zhao, Gautam K. Malhotra, Hamid Band, Vimla Band
PLoS One. 2012; 7(4): e35338. Published online 2012 April 13. doi: 10.1371/journal.pone.0035338
PMCID:
PMC3325967
Abstract Full Text PDF–429K
G9a interacts with Snail and is critical for Snail-mediated E-cadherin repression in human breast cancer
Chenfang Dong, Yadi Wu, Jun Yao, Yifan Wang, Yinhua Yu, Piotr G. Rychahou, B. Mark Evers, Binhua P. Zhou
J Clin Invest. 2012 April 2; 122(4): 1469–1486. Published online 2012 March 12. doi: 10.1172/JCI57349
PMCID:
PMC3314447
Abstract Full Text PDF–8.0M Supplementary Material
Interspecies Comparison of Human and Murine Scleroderma Reveals IL-13 and CCL2 as Disease Subset-Specific Targets
Matthew B. Greenblatt, Jennifer L. Sargent, Giuseppina Farina, Kelly Tsang, Robert Lafyatis, Laurie H. Glimcher, Michael L. Whitfield, Antonios O. Aliprantis
Am J Pathol. 2012 March; 180(3): 1080–1094. doi: 10.1016/j.ajpath.2011.11.024
PMCID:
PMC3349888
Free in PMC on 2013/03/01
SUPPRESSION OF THE EPITHELIAL-MESENCHYMAL TRANSITION BY GRAINYHEAD-LIKE-2
Benjamin Cieply, Philip Riley, IV, Phillip M. Pifer, Joseph Widmeyer, Joseph B. Addison, Alexey V. Ivanov, James Denvir, Steven M. Frisch
Cancer Res. Author manuscript; available in PMC 2013 May 1.
Published in final edited form as: Cancer Res. 2012 May 1; 72(9): 2440–2453. Published online 2012 February 29. doi: 10.1158/0008-5472.CAN-11-4038
PMCID:
PMC3342427
Free in PMC on 2013/05/01
Caveolin-1 expression is elevated in claudin-low mammary tumor cells
Devan E Thompson, Megan D Siwicky, Roger A Moorehead
Cancer Cell Int. 2012; 12: 6. Published online 2012 February 22. doi: 10.1186/1475-2867-12-6
PMCID:
PMC3305435
Abstract Full Text PDF–6.2M
A Phenotypic Mouse Model of Basaloid Breast Tumors
Soyoung Kim, Avtar Roopra, Caroline M. Alexander
PLoS One. 2012; 7(2): e30979. Published online 2012 February 9. doi: 10.1371/journal.pone.0030979
PMCID:
PMC3276569
Abstract Full Text PDF–3.2M Supplementary Material
A mammary stem cell population identified and characterized in late embryogenesis reveals similarities to human breast cancer
Benjamin T. Spike, Dannielle D. Engle, Jennifer C. Lin, Samantha K. Cheung, Justin La, Geoffrey M. Wahl
Cell Stem Cell. Author manuscript; available in PMC 2013 February 3.
Published in final edited form as: Cell Stem Cell. 2012 February 3; 10(2): 183–197. doi: 10.1016/j.stem.2011.12.018
PMCID:
PMC3277444
Free in PMC on 2013/02/03
Global DNA hypomethylation coupled to repressive chromatin domain formation and gene silencing in breast cancer
Gary C. Hon, R. David Hawkins, Otavia L. Caballero, Christine Lo, Ryan Lister, Mattia Pelizzola, Armand Valsesia, Zhen Ye, Samantha Kuan, Lee E. Edsall, Anamaria Aranha Camargo, Brian J. Stevenson, Joseph R. Ecker, Vineet Bafna, Robert L. Strausberg, Andrew J. Simpson, Bing Ren
Genome Res. 2012 February; 22(2): 246–258. doi: 10.1101/gr.125872.111
PMCID:
PMC3266032
Free in PMC on 2012/08/01
Multiple Roles of Cyclin-Dependent Kinase 4/6 Inhibitors in Cancer Therapy
Patrick J. Roberts, John E. Bisi, Jay C. Strum, Austin J. Combest, David B. Darr, Jerry E. Usary, William C. Zamboni, Kwok-Kin Wong, Charles M. Perou, Norman E. Sharpless
J Natl Cancer Inst. 2012 March 21; 104(6): 476–487. Published online 2012 February 1. doi: 10.1093/jnci/djs002
PMCID:
PMC3309128
Free in PMC on 2013/03/21
A Gene Signature for Predicting Outcome in Patients with Basal-like Breast Cancer
Robin M. Hallett, Anna Dvorkin-Gheva, Anita Bane, John A. Hassell
Sci Rep. 2012; 2: 227. Published online 2012 January 17. doi: 10.1038/srep00227
PMCID:
PMC3259129
Abstract Full Text PDF–752K Supplementary Material
The receptor tyrosine kinase ErbB3 maintains the balance between luminal and basal breast epithelium
Justin M. Balko, Todd W. Miller, Meghan M. Morrison, Katherine Hutchinson, Christian Young, Cammie Rinehart, Violeta Sánchez, David Jee, Kornelia Polyak, Aleix Prat, Charles M. Perou, Carlos L. Arteaga, Rebecca S. Cook
Proc Natl Acad Sci U S A. 2012 January 3; 109(1): 221–226. Published online 2011 December 16. doi: 10.1073/pnas.1115802109
PMCID:
PMC3252958
Abstract Full Text PDF–1.4M Supplementary Material
'Omic approaches to preventing or managing metastatic breast cancer
Obi L Griffith, Joe W Gray
Breast Cancer Res. 2011; 13(6): 230. Published online 2011 December 8. doi: 10.1186/bcr2923
PMCID:
PMC3326544
Free in PMC on 2012/06/08
Stem Cell Antigen-1 (Sca-1) Regulates Mammary Tumor Development and Cell Migration
Torey D. Batts, Heather L. Machado, Yiqun Zhang, Chad J. Creighton, Yi Li, Jeffrey M. Rosen
PLoS One. 2011; 6(11): e27841. Published online 2011 November 29. doi: 10.1371/journal.pone.0027841
PMCID:
PMC3226565
Abstract Full Text PDF–3.4M Supplementary Material
Mammary tumors that become independent of the type I insulin-like growth factor receptor express elevated levels of platelet-derived growth factor receptors
Craig I Campbell, Roger A Moorehead
BMC Cancer. 2011; 11: 480. Published online 2011 November 9. doi: 10.1186/1471-2407-11-480
PMCID:
PMC3254084
Abstract Full Text PDF–10M
Gata-3 Negatively Regulates the Tumor-Initiating Capacity of Mammary Luminal Progenitor Cells and Targets the Putative Tumor Suppressor Caspase-14
Marie-Liesse Asselin-Labat, Kate D. Sutherland, François Vaillant, David E. Gyorki, Di Wu, Sheridan Holroyd, Kelsey Breslin, Teresa Ward, Wei Shi, Mary L. Bath, Siddhartha Deb, Stephen B. Fox, Gordon K. Smyth, Geoffrey J. Lindeman, Jane E. Visvader
Mol Cell Biol. 2011 November; 31(22): 4609–4622. doi: 10.1128/MCB.05766-11
PMCID:
PMC3209243
Abstract Full Text PDF–3.7M Supplementary Material
Gene expression profiles of breast biopsies from healthy women identify a group with claudin-low features
Vilde D Haakensen, Ole Christian Lingjærde, Torben Lüders, Margit Riis, Aleix Prat, Melissa A Troester, Marit M Holmen, Jan Ole Frantzen, Linda Romundstad, Dina Navjord, Ida K Bukholm, Tom B Johannesen, Charles M Perou, Giske Ursin, Vessela N Kristensen, Anne-Lise Børresen-Dale, Åslaug Helland
BMC Med Genomics. 2011; 4: 77. Published online 2011 November 1. doi: 10.1186/1755-8794-4-77
PMCID:
PMC3216859
Abstract Full Text PDF–1.9M Supplementary Material
Subtype and pathway specific responses to anticancer compounds in breast cancer
Laura M. Heiser, Anguraj Sadanandam, Wen-Lin Kuo, Stephen C. Benz, Theodore C. Goldstein, Sam Ng, William J. Gibb, Nicholas J. Wang, Safiyyah Ziyad, Frances Tong, Nora Bayani, Zhi Hu, Jessica I. Billig, Andrea Dueregger, Sophia Lewis, Lakshmi Jakkula, James E. Korkola, Steffen Durinck, François Pepin, Yinghui Guan, Elizabeth Purdom, Pierre Neuvial, Henrik Bengtsson, Kenneth W. Wood, Peter G. Smith, Lyubomir T. Vassilev, Bryan T. Hennessy, Joel Greshock, Kurtis E. Bachman, Mary Ann Hardwicke, John W. Park, Laurence J. Marton, Denise M. Wolf, Eric A. Collisson, Richard M. Neve, Gordon B. Mills, Terence P. Speed, Heidi S. Feiler, Richard F. Wooster, David Haussler, Joshua M. Stuart, Joe W. Gray, Paul T. Spellman
Proc Natl Acad Sci U S A. 2012 February 21; 109(8): 2724–2729. Published online 2011 October 14. doi: 10.1073/pnas.1018854108
PMCID:
PMC3286973
Free in PMC on 2012/08/21
Bayesian non-negative factor analysis for reconstructing transcription factor mediated regulatory networks
Jia Meng, Jianqiu (Michelle) Zhang, Yidong Chen, Yufei Huang
Proteome Sci. 2011; 9(Suppl 1): S9. Published online 2011 October 14. doi: 10.1186/1477-5956-9-S1-S9
PMCID:
PMC3289087
Abstract Full Text PDF–2.2M
Identification of Gene Expression Signature Modulated by Nicotinamide in a Mouse Bladder Cancer Model
Seon-Kyu Kim, Seok-Joong Yun, Jiyeon Kim, Ok-Jun Lee, Suk-Chul Bae, Wun-Jae Kim
PLoS One. 2011; 6(10): e26131. Published online 2011 October 10. doi: 10.1371/journal.pone.0026131
PMCID:
PMC3189956
Abstract Full Text PDF–664K Supplementary Material
Classification of microarrays; synergistic effects between normalization, gene selection and machine learning
Jenny Önskog, Eva Freyhult, Mattias Landfors, Patrik Rydén, Torgeir R Hvidsten
BMC Bioinformatics. 2011; 12: 390. Published online 2011 October 7. doi: 10.1186/1471-2105-12-390
PMCID:
PMC3229535
Abstract Full Text PDF–1.5M Supplementary Material
Loss of Trop2 Promotes Carcinogenesis and Features of Epithelial to Mesenchymal Transition in Squamous Cell Carcinoma
Jianbo Wang, Kaihua Zhang, Dorota Grabowska, Aimin Li, Yiyu Dong, Ryan Day, Peter Humphrey, James Lewis, Raleigh D. Kladney, Jeffrey M. Arbeit, Jason D. Weber, Christine H. Chung, Loren S. Michel
Mol Cancer Res. Author manuscript; available in PMC 2012 December 1.
Published in final edited form as: Mol Cancer Res. 2011 December; 9(12): 1686–1695. Published online 2011 October 4. doi: 10.1158/1541-7786.MCR-11-0241
PMCID:
PMC3243826
Free in PMC on 2012/12/01
Loss of Trop2 Promotes Carcinogenesis and Features of Epithelial to Mesenchymal Transition in Squamous Cell Carcinoma
Jianbo Wang, Kaihua Zhang, Dorota Grabowska, Aimin Li, Yiyu Dong, Ryan Day, Peter Humphrey, James Lewis, Raleigh D. Kladney, Jeffrey M. Arbeit, Jason D. Weber, Christine H. Chung, Loren S. Michel
Mol Cancer Res. Author manuscript; available in PMC 2012 December 1.
Published in final edited form as: Mol Cancer Res. 2011 December; 9(12): 1686–1695. Published online 2011 October 4. doi: 10.1158/1541-7786.MCR-11-0241
PMCID:
PMC3243826
Free in PMC on 2012/12/01
Cyclin D1, Id1 and EMT in breast cancer
Nicholas P Tobin, Andrew H Sims, Katja L Lundgren, Sophie Lehn, Göran Landberg
BMC Cancer. 2011; 11: 417. Published online 2011 September 28. doi: 10.1186/1471-2407-11-417
PMCID:
PMC3192789
Abstract Full Text PDF–1.8M Supplementary Material
Stem Cell Antigen-1 Deficiency Enhances the Chemopreventive Effect of Peroxisome Proliferator-Activated Receptorγ Activation
Hongyan Yuan, Geeta Upadhyay, Yuzhi Yin, Levy Kopelovich, Robert I. Glazer
Cancer Prev Res (Phila) Author manuscript; available in PMC 2013 January 1.
Published in final edited form as: Cancer Prev Res (Phila). 2012 January; 5(1): 51–60. Published online 2011 September 28. doi: 10.1158/1940-6207.CAPR-11-0256
PMCID:
PMC3252486
Free in PMC on 2013/01/01
Generation of tumor-initiating cells by exogenous delivery of OCT4 transcription factor
Adriana S Beltran, Ashley G Rivenbark, Bryan T Richardson, Xinni Yuan, Haili Quian, John P Hunt, Eric Zimmerman, Lee M Graves, Pilar Blancafort
Breast Cancer Res. 2011; 13(5): R94. Published online 2011 September 27. doi: 10.1186/bcr3019
PMCID:
PMC3262206
Abstract Full Text PDF–6.5M Supplementary Material
Heterogeneity in MYC-Induced Mammary Tumors Contributes to Escape from Oncogene Dependence
Janet Y. Leung, Eran R. Andrechek, Robert D. Cardiff, Joseph R. Nevins
Oncogene. Author manuscript; available in PMC 2012 May 19.
Published in final edited form as: Oncogene. 2012 May 17; 31(20): 2545–2554. Published online 2011 September 26. doi: 10.1038/onc.2011.433
PMCID:
PMC3356601
Abstract Full Text PDF–3.0M Supplementary Material
Choosing a Mouse Model: Experimental Biology in Context—The Utility and Limitations of Mouse Models of Breast Cancer
Alexander D. Borowsky
Cold Spring Harb Perspect Biol. 2011 September; 3(9): a009670. doi: 10.1101/cshperspect.a009670
PMCID:
PMC3181037
Free in PMC on 2013/09/01
Invasive Breast Cancer: Recognition of Molecular Subtypes
Johanna D. Strehl, David L. Wachter, Peter A. Fasching, Matthias W. Beckmann, Arndt Hartmann
Breast Care (Basel) 2011 August; 6(4): 258–264. Published online 2011 August 26. doi: 10.1159/000331339
PMCID:
PMC3225209
Free in PMC on 2012/08/01
Systems genetics for drug target discovery
Nadia M. Penrod, Richard Cowper-Sal_lari, Jason H. Moore
Trends Pharmacol Sci. Author manuscript; available in PMC 2012 October 1.
Published in final edited form as: Trends Pharmacol Sci. 2011 October; 32(10): 623–630. Published online 2011 August 19. doi: 10.1016/j.tips.2011.07.002
PMCID:
PMC3185183
Free in PMC on 2012/10/01
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