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Discovery of tissue-specific exons using comprehensive human exon microarrays
Tyson A Clark, Anthony C Schweitzer, Tina X Chen, Michelle K Staples, Gang Lu, Hui Wang, Alan Williams, John E Blume
Genome Biol. 2007; 8(4): R64. Published online 2007 April 24. doi: 10.1186/gb-2007-8-4-r64
PMCID:
PMC1896007
Abstract Full Text PDF–565K Supplementary Material

Is Cited by the Following 105 Articles in this Archive:

Identification of conserved splicing motifs in mutually exclusive exons of 15 insect species
Patricia Buendia, John Tyree, Robert Loredo, Shu-Ning Hsu
BMC Genomics. 2012; 13(Suppl 2): S1. Published online 2012 April 12. doi: 10.1186/1471-2164-13-S2-S1
PMCID:
PMC3303723
Abstract Full Text PDF–672K Supplementary Material
Individualized risk for statin-induced myopathy: Current knowledge, emerging challenges, and potential solutions
QiPing Feng, Russell A. Wilke, Tesfaye M. Baye
Pharmacogenomics. Author manuscript; available in PMC 2013 April 1.
Published in final edited form as: Pharmacogenomics. 2012 April; 13(5): 579–594. doi: 10.2217/pgs.12.11
PMCID:
PMC3337775
Free in PMC on 2013/04/01
JETTA: junction and exon toolkits for transcriptome analysis
Junhee Seok, Weihong Xu, Hong Gao, Ronald W. Davis, Wenzhong Xiao
Bioinformatics. 2012 May 1; 28(9): 1274–1275. Published online 2012 March 19. doi: 10.1093/bioinformatics/bts134
PMCID:
PMC3338022
Free in PMC on 2013/05/01
Chronic alcohol exposure alters gene expression in HepG2 cells
Sirisha Pochareddy, Howard J. Edenberg
Alcohol Clin Exp Res. Author manuscript; available in PMC 2013 June 7.
Published in final edited form as: Alcohol Clin Exp Res. 2011 December 7: 10.1111/j.1530-0277.2011.01677.x. doi: 10.1111/j.1530-0277.2011.01677.x
PMCID:
PMC3336023
Free in PMC on 2013/06/07
Gene Array Analyzer: alternative usage of gene arrays to study alternative splicing events
Pascal Gellert, Mizue Teranishi, Katharina Jenniches, Piera De Gaspari, David John, Karsten grosse Kreymborg, Thomas Braun, Shizuka Uchida
Nucleic Acids Res. 2012 March; 40(6): 2414–2425. Published online 2011 November 28. doi: 10.1093/nar/gkr1110
PMCID:
PMC3315316
Abstract Full Text PDF–9.1M Supplementary Material
Genetic Variation of Pre-mRNA Alternative Splicing in Human Populations
Zhi-xiang Lu, Peng Jiang, Yi Xing
Wiley Interdiscip Rev RNA. Author manuscript; available in PMC 2013 May 17.
Published in final edited form as: Wiley Interdiscip Rev RNA. 2011 November 17: 10.1002/wrna.120. doi: 10.1002/wrna.120
PMCID:
PMC3339278
Free in PMC on 2013/05/17
Alternative Transcript Initiation and Splicing as a Response to DNA Damage
Carl N. Sprung, Jason Li, Daniel Hovan, Michael J. McKay, Helen B. Forrester
PLoS One. 2011; 6(10): e25758. Published online 2011 October 19. doi: 10.1371/journal.pone.0025758
PMCID:
PMC3198437
Abstract Full Text PDF–3.2M Supplementary Material
MicroRNA Expression and Regulation in Human, Chimpanzee, and Macaque Brains
Hai Yang Hu, Song Guo, Jiang Xi, Zheng Yan, Ning Fu, Xiaoyu Zhang, Corinna Menzel, Hongyu Liang, Hongyi Yang, Min Zhao, Rong Zeng, Wei Chen, Svante Pääbo, Philipp Khaitovich
PLoS Genet. 2011 October; 7(10): e1002327. Published online 2011 October 13. doi: 10.1371/journal.pgen.1002327
PMCID:
PMC3192836
Abstract Full Text PDF–1.3M Supplementary Material
Quantitative analysis of 5HT2C receptor RNA editing patterns in psychiatric disorders
Richard T. O’Neil, Ronald B. Emeson
Neurobiol Dis. Author manuscript; available in PMC 2013 January 1.
Published in final edited form as: Neurobiol Dis. 2012 January; 45(1): 8–13. Published online 2011 September 3. doi: 10.1016/j.nbd.2011.08.026
PMCID:
PMC3225646
Free in PMC on 2013/01/01
Measuring and analyzing tissue specificity of human genes and protein complexes
Dorothea Emig, Tim Kacprowski, Mario Albrecht
EURASIP J Bioinform Syst Biol. 2011; 2011(1): 5. Published online 2011 August 4. doi: 10.1186/1687-4153-2011-5
PMCID:
PMC3186740
Abstract Full Text PDF–608K
Comprehensive exon array data processing method for quantitative analysis of alternative spliced variants
Ping Chen, Tatiana Lepikhova, Yizhou Hu, Outi Monni, Sampsa Hautaniemi
Nucleic Acids Res. 2011 October; 39(18): e123. Published online 2011 July 9. doi: 10.1093/nar/gkr513
PMCID:
PMC3185423
Abstract Full Text PDF–2.6M Supplementary Material
Molecular design of a splicing switch responsive to the RNA binding protein Tra2β
Sushma Nagaraja Grellscheid, Caroline Dalgliesh, Agata Rozanska, David Grellscheid, Cyril F. Bourgeois, James Stévenin, David J. Elliott
Nucleic Acids Res. 2011 October; 39(18): 8092–8104. Published online 2011 June 30. doi: 10.1093/nar/gkr495
PMCID:
PMC3185414
Abstract Full Text PDF–6.6M
Dynamic usage of alternative splicing exons during mouse retina development
Jun Wan, Tomohiro Masuda, Laszlo Hackler, Jr, Kieron M. Torres, Shannath L. Merbs, Donald J. Zack, Jiang Qian
Nucleic Acids Res. 2011 October; 39(18): 7920–7930. Published online 2011 June 30. doi: 10.1093/nar/gkr545
PMCID:
PMC3185435
Abstract Full Text PDF–5.5M Supplementary Material
Differentially regulated splice variants and systems biology analysis of Kaposi's sarcoma-associated herpesvirus-infected lymphatic endothelial cells
Ting-Yu Chang, Yu-Hsuan Wu, Cheng-Chung Cheng, Hsei-Wei Wang
Nucleic Acids Res. 2011 September; 39(16): 6970–6985. Published online 2011 June 6. doi: 10.1093/nar/gkr405
PMCID:
PMC3167639
Abstract Full Text PDF–12M Supplementary Material
Computational Detection of Alternative Exon Usage
Ted G. Laderas, Nicole A. R. Walter, Michael Mooney, Kristina Vartanian, Priscila Darakjian, Kari Buck, Christina A. Harrington, John Belknap, Robert Hitzemann, Shannon K. McWeeney
Front Neurosci. 2011; 5: 69. Published online 2011 May 13. doi: 10.3389/fnins.2011.00069
PMCID:
PMC3097375
Abstract Full Text PDF–1.7M Supplementary Material
Melanoma Spheroids Grown Under Neural Crest Cell Conditions Are Highly Plastic Migratory/Invasive Tumor Cells Endowed with Immunomodulator Function
Kiran Ramgolam, Jessica Lauriol, Claude Lalou, Laura Lauden, Laurence Michel, Pierre de la Grange, Abdel-Majid Khatib, Fawzi Aoudjit, Dominique Charron, Catherine Alcaide-Loridan, Reem Al-Daccak
PLoS One. 2011; 6(4): e18784. Published online 2011 April 15. doi: 10.1371/journal.pone.0018784
PMCID:
PMC3078142
Abstract Full Text PDF–2.5M Supplementary Material
Exon array data analysis using Affymetrix power tools and R statistical software
Helen E. Lockstone
Brief Bioinform. 2011 November; 12(6): 634–644. Published online 2011 April 15. doi: 10.1093/bib/bbq086
PMCID:
PMC3220870
Abstract Full Text PDF–177K
Identification of Tat-SF1 cellular targets by exon array analysis reveals dual roles in transcription and splicing
Heather B. Miller, Timothy J. Robinson, Raluca Gordân, Alexander J. Hartemink, Mariano A. Garcia-Blanco
RNA. 2011 April; 17(4): 665–674. doi: 10.1261/rna.2462011
PMCID:
PMC3062177
Abstract Full Text PDF–351K
Brain eQTL Mapping Informs Genetic Studies of Psychiatric Diseases
Chunyu Liu
Neurosci Bull. Author manuscript; available in PMC 2011 May 1.
Published in final edited form as: Neurosci Bull. 2011 April; 27(2): 123–133.
PMCID:
PMC3074249
Abstract Full Text PDF–317K
Dysfunctional Gene Splicing as a Potential Contributor to Neuropsychiatric Disorders
Stephen J. Glatt, Ori S. Cohen, Stephen V. Faraone, Ming T. Tsuang
Am J Med Genet B Neuropsychiatr Genet. Author manuscript; available in PMC 2012 June 1.
Published in final edited form as: Am J Med Genet B Neuropsychiatr Genet. 2011 June; 156B(4): 382–392. Published online 2011 March 22. doi: 10.1002/ajmg.b.31181
PMCID:
PMC3082621
Free in PMC on 2012/06/01
Sperm-Associated Antigen 9 Is a Novel Biomarker for Colorectal Cancer and Is Involved in Tumor Growth and Tumorigenicity
Deepika Kanojia, Manoj Garg, Samir Gupta, Anju Gupta, Anil Suri
Am J Pathol. 2011 March; 178(3): 1009–1020. doi: 10.1016/j.ajpath.2010.11.047
PMCID:
PMC3069833
Abstract Full Text PDF–5.0M
Comprehensive Analysis of Alternative Splicing and Functionality in Neuronal Differentiation of P19 Cells
Hitoshi Suzuki, Ken Osaki, Kaori Sano, A. H. M. Khurshid Alam, Yuichiro Nakamura, Yasuhito Ishigaki, Kozo Kawahara, Toshifumi Tsukahara
PLoS One. 2011; 6(2): e16880. Published online 2011 February 18. doi: 10.1371/journal.pone.0016880
PMCID:
PMC3041816
Abstract Full Text PDF–636K Supplementary Material
Human transcriptome array for high-throughput clinical studies
Weihong Xu, Junhee Seok, Michael N. Mindrinos, Anthony C. Schweitzer, Hui Jiang, Julie Wilhelmy, Tyson A. Clark, Karen Kapur, Yi Xing, Malek Faham, John D. Storey, Lyle L. Moldawer, Ronald V. Maier, Ronald G. Tompkins, Wing Hung Wong, Ronald W. Davis, Wenzhong Xiao, the Inflammation and Host Response to Injury Large-Scale Collaborative Research Program, Mehmet Toner, H. Shaw Warren, David A. Schoenfeld, Laurence Rahme, Grace P. McDonald-Smith, Douglas Hayden, Philip Mason, Shawn Fagan, Yong-Ming Yu, J. Perren Cobb, Daniel G. Remick, John A. Mannick, James A. Lederer, Richard L. Gamelli, Geoffrey M. Silver, Michael A. West, Michael B. Shapiro, Richard Smith, David G. Camp, II, Weijun Qian, Rob Tibshirani, Stephen Lowry, Steven Calvano, Irshad Chaudry, Mitchell Cohen, Ernest E. Moore, Jeffrey Johnson, Henry V. Baker, Philip A. Efron, Ulysses G. J. Balis, Timothy R. Billiar, Juan B. Ochoa, Jason L. Sperry, Carol L. Miller-Graziano, Asit K. De, Paul E. Bankey, David N. Herndon, Celeste C. Finnerty, Marc G. Jeschke, Joseph P. Minei, Brett D. Arnoldo, John L. Hunt, Jureta Horton, J. Perren Cobb, Bernard Brownstein, Bradley Freeman, Avery B. Nathens, Joseph Cuschieri, Nicole Gibran, Matthew Klein, Grant O'Keefe
Proc Natl Acad Sci U S A. 2011 March 1; 108(9): 3707–3712. Published online 2011 February 11. doi: 10.1073/pnas.1019753108
PMCID:
PMC3048146
Abstract Full Text PDF–523K Supplementary Material
Jumonji domain-containing protein 6 (Jmjd6) is required for angiogenic sprouting and regulates splicing of VEGF-receptor 1
Jes-Niels Boeckel, Virginia Guarani, Masamichi Koyanagi, Tino Roexe, Andreas Lengeling, Ralph T. Schermuly, Pascal Gellert, Thomas Braun, Andreas Zeiher, Stefanie Dimmeler
Proc Natl Acad Sci U S A. 2011 February 22; 108(8): 3276–3281. Published online 2011 February 7. doi: 10.1073/pnas.1008098108
PMCID:
PMC3044381
Abstract Full Text PDF–771K Supplementary Material
Differential gene expression in liver and small intestine from lactating rats compared to age-matched virgin controls detects increased mRNA of cholesterol biosynthetic genes
Antony Athippozhy, Liping Huang, Clavia Ruth Wooton-Kee, Tianyong Zhao, Paiboon Jungsuwadee, Arnold J Stromberg, Mary Vore
BMC Genomics. 2011; 12: 95. Published online 2011 February 3. doi: 10.1186/1471-2164-12-95
PMCID:
PMC3045338
Abstract Full Text PDF–476K Supplementary Material
Genome-wide analysis of alternative splicing in medulloblastoma identifies splicing patterns characteristic of normal cerebellar development
Francesca Menghi, Thomas S. Jacques, Martino Barenco, Ed C. Schwalbe, Steven C. Clifford, Mike Hubank, Jonathan Ham
Cancer Res. Author manuscript; available in PMC 2011 September 1.
Published in final edited form as: Cancer Res. 2011 March 15; 71(6): 2045–2055. Published online 2011 January 19. doi: 10.1158/0008-5472.CAN-10-2519
PMCID:
PMC3060131
Abstract Full Text PDF–1.6M Supplementary Material
A molecular inversion probe assay for detecting alternative splicing
Shengrong Lin, Wenyi Wang, Curtis Palm, Ronald W Davis, Kara Juneau
BMC Genomics. 2010; 11: 712. Published online 2010 December 17. doi: 10.1186/1471-2164-11-712
PMCID:
PMC3022918
Abstract Full Text PDF–631K Supplementary Material
Exon Array Analysis using re-defined probe sets results in reliable identification of alternatively spliced genes in non-small cell lung cancer
Wolfram Langer, Florian Sohler, Gabriele Leder, Georg Beckmann, Henrik Seidel, Jörn Gröne, Michael Hummel, Anette Sommer
BMC Genomics. 2010; 11: 676. Published online 2010 November 30. doi: 10.1186/1471-2164-11-676
PMCID:
PMC3053589
Abstract Full Text PDF–1.0M Supplementary Material
Improvements to previous algorithms to predict gene structure and isoform concentrations using Affymetrix Exon arrays
Miguel A Anton, Ander Aramburu, Angel Rubio
BMC Bioinformatics. 2010; 11: 578. Published online 2010 November 26. doi: 10.1186/1471-2105-11-578
PMCID:
PMC3012675
Abstract Full Text PDF–904K Supplementary Material
Alternative Splicing in Bone Following Mechanical Loading
Sara M. Mantila Roosa, Yunlong Liu, Charles H. Turner
Bone. Author manuscript; available in PMC 2012 March 1.
Published in final edited form as: Bone. 2011 March 1; 48(3): 543–551. Published online 2010 November 21. doi: 10.1016/j.bone.2010.11.006
PMCID:
PMC3039044
Abstract Full Text PDF–422K Supplementary Material
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