My NCBISign In
Evolutionary conservation of sequence and secondary structures in CRISPR repeats
Victor Kunin, Rotem Sorek, Philip Hugenholtz
Genome Biol. 2007; 8(4): R61. Published online 2007 April 18. doi: 10.1186/gb-2007-8-4-r61
PMCID:
PMC1896005
Abstract Full Text PDF–1.0M Supplementary Material

Is Cited by the Following 39 Articles in this Archive:

Identification of Novel Positive-Strand RNA Viruses by Metagenomic Analysis of Archaea-Dominated Yellowstone Hot Springs
Benjamin Bolduc, Daniel P. Shaughnessy, Yuri I. Wolf, Eugene V. Koonin, Francisco F. Roberto, Mark Young
J Virol. 2012 May; 86(10): 5562–5573. doi: 10.1128/JVI.07196-11
PMCID:
PMC3347303
Free in PMC on 2012/11/01
Mechanism of substrate selection by a highly specific CRISPR endoribonuclease
Samuel H. Sternberg, Rachel E. Haurwitz, Jennifer A. Doudna
RNA. 2012 April; 18(4): 661–672. doi: 10.1261/rna.030882.111
PMCID:
PMC3312554
Abstract Full Text PDF–1.2M
A genome-wide view of the expression and processing patterns of Thermus thermophilus HB8 CRISPR RNAs
Stefan Juranek, Tali Eban, Yael Altuvia, Miguel Brown, Pavel Morozov, Thomas Tuschl, Hanah Margalit
RNA. 2012 April; 18(4): 783–794. doi: 10.1261/rna.031468.111
PMCID:
PMC3312565
Free in PMC on 2013/04/01
Identification of CRISPR and riboswitch related RNAs among novel noncoding RNAs of the euryarchaeon Pyrococcus abyssi
Kounthéa Phok, Annick Moisan, Dana Rinaldi, Nicolas Brucato, Agamemnon J Carpousis, Christine Gaspin, Béatrice Clouet-d'Orval
BMC Genomics. 2011; 12: 312. Published online 2011 June 13. doi: 10.1186/1471-2164-12-312
PMCID:
PMC3124441
Abstract Full Text PDF–1.4M Supplementary Material
Diversity, Evolution, and Functionality of Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) Regions in the Fire Blight Pathogen Erwinia amylovora
Fabio Rezzonico, Theo H. M. Smits, Brion Duffy
Appl Environ Microbiol. 2011 June; 77(11): 3819–3829. doi: 10.1128/AEM.00177-11
PMCID:
PMC3127596
Abstract Full Text PDF–1.9M Supplementary Material
CRISPR Inhibition of Prophage Acquisition in Streptococcus pyogenes
Takashi Nozawa, Nayuta Furukawa, Chihiro Aikawa, Takayasu Watanabe, Bijaya Haobam, Ken Kurokawa, Fumito Maruyama, Ichiro Nakagawa
PLoS One. 2011; 6(5): e19543. Published online 2011 May 6. doi: 10.1371/journal.pone.0019543
PMCID:
PMC3089615
Abstract Full Text PDF–447K Supplementary Material
RNA-guided complex from a bacterial immune system enhances target recognition through seed sequence interactions
Blake Wiedenheft, Esther van Duijn, Jelle B. Bultema, Sakharam P. Waghmare, Kaihong Zhou, Arjan Barendregt, Wiebke Westphal, Albert J. R. Heck, Egbert J. Boekema, Mark J. Dickman, Jennifer A. Doudna
Proc Natl Acad Sci U S A. 2011 June 21; 108(25): 10092-10097. Published online 2011 May 2. doi: 10.1073/pnas.1102716108
Correction in:
Proc Natl Acad Sci U S A. 2011 September 6; 108(36): 15010.
PMCID:
PMC3121849
Abstract Full Text PDF–1.0M Supplementary Material Correction
CRISPR-Based Adaptive Immune Systems
Michael P. Terns, Rebecca M. Terns
Curr Opin Microbiol. Author manuscript; available in PMC 2012 June 1.
Published in final edited form as: Curr Opin Microbiol. 2011 June; 14(3): 321–327. Published online 2011 April 29. doi: 10.1016/j.mib.2011.03.005
PMCID:
PMC3119747
Free in PMC on 2012/06/01
Structural and Functional Characterization of an Archaeal Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR)-associated Complex for Antiviral Defense (CASCADE)
Nathanael G. Lintner, Melina Kerou, Susan K. Brumfield, Shirley Graham, Huanting Liu, James H. Naismith, Matthew Sdano, Nan Peng, Qunxin She, Valérie Copié, Mark J. Young, Malcolm F. White, C. Martin Lawrence
J Biol Chem. 2011 June 17; 286(24): 21643–21656. Published online 2011 April 20. doi: 10.1074/jbc.M111.238485
PMCID:
PMC3122221
Free in PMC on 2012/06/17
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
Elitza Deltcheva, Krzysztof Chylinski, Cynthia M. Sharma, Karine Gonzales, Yanjie Chao, Zaid A. Pirzada, Maria R. Eckert, Jörg Vogel, Emmanuelle Charpentier
Nature. Author manuscript; available in PMC 2011 September 30.
Published in final edited form as: Nature. 2011 March 31; 471(7340): 602–607. doi: 10.1038/nature09886
PMCID:
PMC3070239
Abstract Full Text PDF–1.0M Supplementary Material
The Genome of Akkermansia muciniphila, a Dedicated Intestinal Mucin Degrader, and Its Use in Exploring Intestinal Metagenomes
Mark W. J. van Passel, Ravi Kant, Erwin G. Zoetendal, Caroline M. Plugge, Muriel Derrien, Stephanie A. Malfatti, Patrick S. G. Chain, Tanja Woyke, Airi Palva, Willem M. de Vos, Hauke Smidt
PLoS One. 2011; 6(3): e16876. Published online 2011 March 3. doi: 10.1371/journal.pone.0016876
PMCID:
PMC3048395
Abstract Full Text PDF–249K Supplementary Material
Interaction of the Cas6 riboendonuclease with CRISPR RNAs: recognition and cleavage
Ruiying Wang, Gan Preamplume, Michael P. Terns, Rebecca M. Terns, Hong Li
Structure. Author manuscript; available in PMC 2012 February 9.
Published in final edited form as: Structure. 2011 February 9; 19(2): 257–264. doi: 10.1016/j.str.2010.11.014
PMCID:
PMC3154685
Abstract Full Text PDF–1.5M Supplementary Material
Comparative analysis and supragenome modeling of twelve Moraxella catarrhalis clinical isolates
Jeremiah J Davie, Josh Earl, Stefan PW de Vries, Azad Ahmed, Fen Z Hu, Hester J Bootsma, Kim Stol, Peter WM Hermans, Robert M Wadowsky, Garth D Ehrlich, John P Hays, Anthony A Campagnari
BMC Genomics. 2011; 12: 70. Published online 2011 January 26. doi: 10.1186/1471-2164-12-70
PMCID:
PMC3045334
Abstract Full Text PDF–1.6M Supplementary Material
The phage-host arms-race: Shaping the evolution of microbes
Adi Stern, Rotem Sorek
Bioessays. Author manuscript; available in PMC 2012 February 8.
Published in final edited form as: Bioessays. 2011 January; 33(1): 43–51. doi: 10.1002/bies.201000071
PMCID:
PMC3274958
Abstract Full Text PDF–746K
Envelope stress is a trigger of CRISPR RNA-mediated DNA silencing in Escherichia coli
Ritsdeliz Perez-Rodriguez, Charles Haitjema, Qingqiu Huang, Ki Hyun Nam, Sarah Bernardis, Ailong Ke, Matthew P. DeLisa
Mol Microbiol. Author manuscript; available in PMC 2012 February 1.
Published in final edited form as: Mol Microbiol. 2011 February; 79(3): 584–599. Published online 2010 December 13. doi: 10.1111/j.1365-2958.2010.07482.x
PMCID:
PMC3040579
Abstract Full Text PDF–2.9M Supplementary Material
A dual function of the CRISPR-Cas system in bacterial antivirus immunity and DNA repair
Mohan Babu, Natalia Beloglazova, Robert Flick, Chris Graham, Tatiana Skarina, Boguslaw Nocek, Alla Gagarinova, Oxana Pogoutse, Greg Brown, Andrew Binkowski, Sadhna Phanse, Andrzej Joachimiak, Eugene V. Koonin, Alexei Savchenko, Andrew Emili, Jack Greenblatt, Aled M. Edwards, Alexander F. Yakunin
Mol Microbiol. Author manuscript; available in PMC 2012 January 1.
Published in final edited form as: Mol Microbiol. 2011 January; 79(2): 484–502. Published online 2010 December 7. doi: 10.1111/j.1365-2958.2010.07465.x
PMCID:
PMC3071548
Abstract Full Text PDF–2.6M Supplementary Material
Binding and cleavage of CRISPR RNA by Cas6
Jason Carte, Neil T. Pfister, Mark M. Compton, Rebecca M. Terns, Michael P. Terns
RNA. 2010 November; 16(11): 2181–2188. doi: 10.1261/rna.2230110
PMCID:
PMC2957057
Abstract Full Text PDF–473K
Use of Cellular CRISPR (Clusters of Regularly Interspaced Short Palindromic Repeats) Spacer-Based Microarrays for Detection of Viruses in Environmental Samples
Jamie C. Snyder, Mary M. Bateson, Matthew Lavin, Mark J. Young
Appl Environ Microbiol. 2010 November; 76(21): 7251–7258. Published online 2010 September 17. doi: 10.1128/AEM.01109-10
PMCID:
PMC2976250
Abstract Full Text PDF–323K Supplementary Material
Sequence- and structure-specific RNA processing by a CRISPR endonuclease
Rachel E. Haurwitz, Martin Jinek, Blake Wiedenheft, Kaihong Zhou, Jennifer A. Doudna
Science. Author manuscript; available in PMC 2011 July 12.
Published in final edited form as: Science. 2010 September 10; 329(5997): 1355–1358. doi: 10.1126/science.1192272
PMCID:
PMC3133607
Abstract Full Text PDF–7.3M Supplementary Material
Interference with histidyl-tRNA synthetase by a CRISPR spacer sequence as a factor in the evolution of Pelobacter carbinolicus
Muktak Aklujkar, Derek R Lovley
BMC Evol Biol. 2010; 10: 230. Published online 2010 July 28. doi: 10.1186/1471-2148-10-230
PMCID:
PMC2923632
Abstract Full Text PDF–578K Supplementary Material
A versatile palindromic amphipathic repeat coding sequence horizontally distributed among diverse bacterial and eucaryotic microbes
Kerstin Röske, Mark F Foecking, Shibu Yooseph, John I Glass, Michael J Calcutt, Kim S Wise
BMC Genomics. 2010; 11: 430. Published online 2010 July 13. doi: 10.1186/1471-2164-11-430
PMCID:
PMC2996958
Abstract Full Text PDF–1.3M Supplementary Material
Self-targeting by CRISPR: gene regulation or autoimmunity?
Adi Stern, Leeat Keren, Omri Wurtzel, Gil Amitai, Rotem Sorek
Trends Genet. Author manuscript; available in PMC 2011 August 1.
Published in final edited form as: Trends Genet. 2010 August; 26(8): 335–340. Published online 2010 July 1. doi: 10.1016/j.tig.2010.05.008
PMCID:
PMC2910793
Abstract Full Text PDF–133K Supplementary Material
The Small, Slow and Specialized CRISPR and Anti-CRISPR of Escherichia and Salmonella
Marie Touchon, Eduardo P. C. Rocha
PLoS One. 2010; 5(6): e11126. Published online 2010 June 15. doi: 10.1371/journal.pone.0011126
PMCID:
PMC2886076
Abstract Full Text PDF–1.8M Supplementary Material
Genome Sequence of the Plant Growth Promoting Endophytic Bacterium Enterobacter sp. 638
Safiyh Taghavi, Daniel van der Lelie, Adam Hoffman, Yian-Biao Zhang, Michael D. Walla, Jaco Vangronsveld, Lee Newman, Sébastien Monchy
PLoS Genet. 2010 May; 6(5): e1000943. Published online 2010 May 13. doi: 10.1371/journal.pgen.1000943
PMCID:
PMC2869309
Abstract Full Text PDF–2.0M Supplementary Material
Livestock-associated Methicillin-Resistant Staphylococcus aureus Sequence Type 398 in Humans, Canada
George R. Golding, Louis Bryden, Paul N. Levett, Ryan R. McDonald, Alice Wong, John Wylie, Morag R. Graham, Shaun Tyler, Gary Van Domselaar, Andrew E. Simor, Denise Gravel, Michael R. Mulvey
Emerg Infect Dis. 2010 April; 16(4): 587–594. doi: 10.3201/eid1604.091435
PMCID:
PMC3321955
Abstract Full Text PDF–387K
Replacing Reverse Line Blot Hybridization Spoligotyping of the Mycobacterium tuberculosis Complex
Christiane Honisch, Michael Mosko, Catherine Arnold, Saheer E. Gharbia, Roland Diel, Stefan Niemann
J Clin Microbiol. 2010 May; 48(5): 1520–1526. Published online 2010 March 3. doi: 10.1128/JCM.02299-09
PMCID:
PMC2863940
Abstract Full Text PDF–897K
CRISPR interference: RNA-directed adaptive immunity in bacteria and archaea
Luciano A. Marraffini, Erik J. Sontheimer
Nat Rev Genet. Author manuscript; available in PMC 2011 April 13.
Published in final edited form as: Nat Rev Genet. 2010 March; 11(3): 181–190. doi: 10.1038/nrg2749
PMCID:
PMC2928866
Abstract Full Text PDF–397K
Evolutionary Dynamics of Clustered Irregularly Interspaced Short Palindromic Repeat Systems in the Ocean Metagenome
Valery A. Sorokin, Mikhail S. Gelfand, Irena I. Artamonova
Appl Environ Microbiol. 2010 April; 76(7): 2136–2144. Published online 2010 January 29. doi: 10.1128/AEM.01985-09
PMCID:
PMC2849227
Abstract Full Text PDF–1.0M
The CRISPR system: small RNA-guided defense in bacteria and archaea
Fedor V. Karginov, Gregory J. Hannon
Mol Cell. Author manuscript; available in PMC 2010 July 15.
Published in final edited form as: Mol Cell. 2010 January 15; 37(1): 7. doi: 10.1016/j.molcel.2009.12.033
PMCID:
PMC2819186
Abstract Full Text PDF–1.3M
Central Role of the Cell in Microbial Ecology
Karsten Zengler
Microbiol Mol Biol Rev. 2009 December; 73(4): 712–729. doi: 10.1128/MMBR.00027-09
PMCID:
PMC2786577
Abstract Full Text PDF–1.0M
You are here: NCBI > Literature > PubMed Central (PMC)
Write to the Help Desk