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Integration of Arabidopsis thaliana stress-related transcript profiles, promoter structures, and cell-specific expression
Shisong Ma, Hans J Bohnert
Genome Biol. 2007; 8(4): R49. Published online 2007 April 4. doi: 10.1186/gb-2007-8-4-r49
PMCID:
PMC1896000
Abstract Full Text PDF–1.1M Supplementary Material

Is Cited by the Following 27 Articles in this Archive:

Transcriptome profiling of low temperature-treated cassava apical shoots showed dynamic responses of tropical plant to cold stress
Dong An, Jun Yang, Peng Zhang
BMC Genomics. 2012; 13: 64. Published online 2012 February 10. doi: 10.1186/1471-2164-13-64
PMCID:
PMC3339519
Abstract Full Text PDF–6.6M Supplementary Material
Transcriptional Downregulation of Rice rpL32 Gene under Abiotic Stress Is Associated with Removal of Transcription Factors within the Promoter Region
Pradipto Mukhopadhyay, Malireddy K. Reddy, Sneh Lata Singla-Pareek, Sudhir K. Sopory
PLoS One. 2011; 6(11): e28058. Published online 2011 November 23. doi: 10.1371/journal.pone.0028058
PMCID:
PMC3223225
Abstract Full Text PDF–1.3M Supplementary Material
Cell identity regulators link development and stress responses in the Arabidopsis root
Anjali S. Iyer-Pascuzzi, Terry Jackson, Hongchang Cui, Jalean J. Petricka, Wolfgang Busch, Hironaka Tsukagoshi, Philip N. Benfey
Dev Cell. Author manuscript; available in PMC 2012 October 18.
Published in final edited form as: Dev Cell. 2011 October 18; 21(4): 770–782. doi: 10.1016/j.devcel.2011.09.009
PMCID:
PMC3204215
Free in PMC on 2012/10/18
Integrative Identification of Arabidopsis Mitochondrial Proteome and Its Function Exploitation through Protein Interaction Network
Jian Cui, Jinghua Liu, Yuhua Li, Tieliu Shi
PLoS One. 2011; 6(1): e16022. Published online 2011 January 31. doi: 10.1371/journal.pone.0016022
PMCID:
PMC3031521
Abstract Full Text PDF–976K Supplementary Material
Linking the Salt Transcriptome with Physiological Responses of a Salt-Resistant Populus Species as a Strategy to Identify Genes Important for Stress Acclimation
Monika Brinker, Mikael Brosché, Basia Vinocur, Atef Abo-Ogiala, Payam Fayyaz, Dennis Janz, Eric A. Ottow, Andreas D. Cullmann, Joachim Saborowski, Jaakko Kangasjärvi, Arie Altman, Andrea Polle
Plant Physiol. 2010 December; 154(4): 1697–1709. Published online 2010 October 19. doi: 10.1104/pp.110.164152
PMCID:
PMC2996017
Abstract Full Text PDF–595K Supplementary Material
A Central Regulatory System Largely Controls Transcriptional Activation and Repression Responses to Phosphate Starvation in Arabidopsis
Regla Bustos, Gabriel Castrillo, Francisco Linhares, María Isabel Puga, Vicente Rubio, Julian Pérez-Pérez, Roberto Solano, Antonio Leyva, Javier Paz-Ares
PLoS Genet. 2010 September; 6(9): e1001102. Published online 2010 September 9. doi: 10.1371/journal.pgen.1001102
PMCID:
PMC2936532
Abstract Full Text PDF–2.8M Supplementary Material
Growth Performance and Root Transcriptome Remodeling of Arabidopsis in Response to Mars-Like Levels of Magnesium Sulfate
Anne M. Visscher, Anna-Lisa Paul, Matias Kirst, Charles L. Guy, Andrew C. Schuerger, Robert J. Ferl
PLoS One. 2010; 5(8): e12348. Published online 2010 August 23. doi: 10.1371/journal.pone.0012348
PMCID:
PMC2925951
Abstract Full Text PDF–7.4M Supplementary Material
Integrative analysis of large scale expression profiles reveals core transcriptional response and coordination between multiple cellular processes in a cyanobacterium
Abhay K Singh, Thanura Elvitigala, Jeffrey C Cameron, Bijoy K Ghosh, Maitrayee Bhattacharyya-Pakrasi, Himadri B Pakrasi
BMC Syst Biol. 2010; 4: 105. Published online 2010 August 2. doi: 10.1186/1752-0509-4-105
PMCID:
PMC2924297
Abstract Full Text PDF–1.1M Supplementary Material
Pathway analysis of the transcriptome and metabolome of salt sensitive and tolerant poplar species reveals evolutionary adaption of stress tolerance mechanisms
Dennis Janz, Katja Behnke, Jörg-Peter Schnitzler, Basem Kanawati, Philippe Schmitt-Kopplin, Andrea Polle
BMC Plant Biol. 2010; 10: 150. Published online 2010 July 17. doi: 10.1186/1471-2229-10-150
PMCID:
PMC3095294
Abstract Full Text PDF–1.3M Supplementary Material
Arabidopsis RETINOBLASTOMA-RELATED Is Required for Stem Cell Maintenance, Cell Differentiation, and Lateral Organ Production
Lorenzo Borghi, Ruben Gutzat, Johannes Fütterer, Yec'han Laizet, Lars Hennig, Wilhelm Gruissem
Plant Cell. 2010 June; 22(6): 1792–1811. Published online 2010 June 4. doi: 10.1105/tpc.110.074591
PMCID:
PMC2910961
Abstract Full Text PDF–2.5M
The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants
Pinja Jaspers, Kirk Overmyer, Michael Wrzaczek, Julia P Vainonen, Tiina Blomster, Jarkko Salojärvi, Ramesha A Reddy, Jaakko Kangasjärvi
BMC Genomics. 2010; 11: 170. Published online 2010 March 12. doi: 10.1186/1471-2164-11-170
PMCID:
PMC2848248
Abstract Full Text PDF–7.6M Supplementary Material
Arabidopsis Deadenylases AtCAF1a and AtCAF1b Play Overlapping and Distinct Roles in Mediating Environmental Stress Responses
Justin W. Walley, Dior R. Kelley, Gergana Nestorova, David L. Hirschberg, Katayoon Dehesh
Plant Physiol. 2010 February; 152(2): 866–875. doi: 10.1104/pp.109.149005
PMCID:
PMC2815882
Abstract Full Text PDF–1.5M Supplementary Material
Bioinformatic and Systems Biology Tools to Generate Testable Models of Signaling Pathways and Their Targets
Andrea Pitzschke, Heribert Hirt
Plant Physiol. 2010 February; 152(2): 460–469. doi: 10.1104/pp.109.149583
PMCID:
PMC2815901
Full Text PDF–549K
Identification and functional characterisation of the promoter of the calcium sensor gene CBL1 from the xerophyte Ammopiptanthus mongolicus
Lili Guo, Yanhua Yu, Xinli Xia, Weilun Yin
BMC Plant Biol. 2010; 10: 18. Published online 2010 January 29. doi: 10.1186/1471-2229-10-18
PMCID:
PMC2844064
Abstract Full Text PDF–2.3M Supplementary Material
Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress
Kil-Young Yun, Myoung Ryoul Park, Bijayalaxmi Mohanty, Venura Herath, Fuyu Xu, Ramil Mauleon, Edward Wijaya, Vladimir B Bajic, Richard Bruskiewich, Benildo G de los Reyes
BMC Plant Biol. 2010; 10: 16. Published online 2010 January 25. doi: 10.1186/1471-2229-10-16
PMCID:
PMC2826336
Abstract Full Text PDF–2.2M Supplementary Material
VIP1 response elements mediate mitogen-activated protein kinase 3-induced stress gene expression
Andrea Pitzschke, Armin Djamei, Markus Teige, Heribert Hirt
Proc Natl Acad Sci U S A. 2009 October 27; 106(43): 18414–18419. Published online 2009 October 9. doi: 10.1073/pnas.0905599106
PMCID:
PMC2759709
Abstract Full Text PDF–851K Supplementary Material
Reverse-engineering the Arabidopsis thaliana transcriptional network under changing environmental conditions
Javier Carrera, Guillermo Rodrigo, Alfonso Jaramillo, Santiago F Elena
Genome Biol. 2009; 10(9): R96. Published online 2009 September 15. doi: 10.1186/gb-2009-10-9-r96
PMCID:
PMC2768985
Abstract Full Text PDF–2.6M Supplementary Material
A Major Role of the MEKK1–MKK1/2–MPK4 Pathway in ROS Signalling
Andrea Pitzschke, Armin Djamei, Frédérique Bitton, Heribert Hirt
Mol Plant. 2009 January; 2(1): 120–137. Published online 2009 January 6. doi: 10.1093/mp/ssn079
PMCID:
PMC2639734
Abstract Full Text PDF–279K
Identification of transcription factors involved in root apex responses to salt stress in Medicago truncatula
Véronique Gruber, Sandrine Blanchet, Anouck Diet, Ons Zahaf, Adnane Boualem, Klementina Kakar, Benoît Alunni, Michael Udvardi, Florian Frugier, Martin Crespi
Mol Genet Genomics. 2009 January; 281(1): 55–66. Published online 2008 November 6. doi: 10.1007/s00438-008-0392-8
PMCID:
PMC2757595
Abstract Full Text PDF–587K Supplementary Material
Regulon organization of Arabidopsis
Wieslawa I Mentzen, Eve Syrkin Wurtele
BMC Plant Biol. 2008; 8: 99. Published online 2008 September 30. doi: 10.1186/1471-2229-8-99
PMCID:
PMC2567982
Abstract Full Text PDF–2.6M Supplementary Material
Transcriptional profiling of pea ABR17 mediated changes in gene expression in Arabidopsis thaliana
Sowmya S Krishnaswamy, Sanjeeva Srivastava, Mohsen Mohammadi, Muhammad H Rahman, Michael K Deyholos, Nat NV Kav
BMC Plant Biol. 2008; 8: 91. Published online 2008 September 10. doi: 10.1186/1471-2229-8-91
PMCID:
PMC2559843
Abstract Full Text PDF–2.7M Supplementary Material
Convergent energy and stress signaling
Elena Baena-González, Jen Sheen
Trends Plant Sci. Author manuscript; available in PMC 2011 April 13.
Published in final edited form as: Trends Plant Sci. 2008 September; 13(9): 474–482. Published online 2008 August 11. doi: 10.1016/j.tplants.2008.06.006
PMCID:
PMC3075853
Abstract Full Text PDF–154K
The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors
Daiqing Huang, Weiren Wu, Suzanne R. Abrams, Adrian J. Cutler
J Exp Bot. 2008 August; 59(11): 2991–3007. Published online 2008 June 13. doi: 10.1093/jxb/ern155
PMCID:
PMC2504347
Abstract Full Text PDF–1.7M Supplementary Material
The F-Box Protein ACRE189/ACIF1 Regulates Cell Death and Defense Responses Activated during Pathogen Recognition in Tobacco and Tomato
Harrold A. van den Burg, Dimitrios I. Tsitsigiannis, Owen Rowland, Jane Lo, Ghanasyam Rallapalli, Daniel MacLean, Frank L.W. Takken, Jonathan D.G. Jones
Plant Cell. 2008 March; 20(3): 697–719. doi: 10.1105/tpc.107.056978
PMCID:
PMC2329923
Abstract Full Text PDF–2.8M Supplementary Material
Coping Mechanisms for Crop Plants in Drought-prone Environments
Peter M. Neumann
Ann Bot. 2008 May; 101(7): 901–907. Published online 2008 February 5. doi: 10.1093/aob/mcn018
PMCID:
PMC2710230
Abstract Full Text PDF–129K
Mechanical Stress Induces Biotic and Abiotic Stress Responses via a Novel cis-Element
Justin W Walley, Sean Coughlan, Matthew E Hudson, Michael F Covington, Roy Kaspi, Gopalan Banu, Stacey L Harmer, Katayoon Dehesh
PLoS Genet. 2007 October; 3(10): e172. Prepublished online 2007 August 24. Published online 2007 October 19. doi: 10.1371/journal.pgen.0030172
PMCID:
PMC2039767
Abstract Full Text PDF–1.5M Supplementary Material
EDISA: extracting biclusters from multiple time-series of gene expression profiles
Jochen Supper, Martin Strauch, Dierk Wanke, Klaus Harter, Andreas Zell
BMC Bioinformatics. 2007; 8: 334. Published online 2007 September 12. doi: 10.1186/1471-2105-8-334
PMCID:
PMC2063505
Abstract Full Text PDF–3.9M Supplementary Material
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