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Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags
Jan Gorodkin, Susanna Cirera, Jakob Hedegaard, Michael J Gilchrist, Frank Panitz, Claus Jørgensen, Karsten Scheibye-Knudsen, Troels Arvin, Steen Lumholdt, Milena Sawera, Trine Green, Bente J Nielsen, Jakob H Havgaard, Carina Rosenkilde, Jun Wang, Heng Li, Ruiqiang Li, Bin Liu, Songnian Hu, Wei Dong, Wei Li, Jun Yu, Jian Wang, Hans-Henrik Stærfeldt, Rasmus Wernersson, Lone B Madsen, Bo Thomsen, Henrik Hornshøj, Zhan Bujie, Xuegang Wang, Xuefei Wang, Lars Bolund, Søren Brunak, Huanming Yang, Christian Bendixen, Merete Fredholm
Genome Biol. 2007; 8(4): R45. Published online 2007 April 2. doi: 10.1186/gb-2007-8-4-r45
PMCID:
PMC1895994
Abstract Full Text PDF–537K Supplementary Material

Is Cited by the Following 21 Articles in this Archive:

From Structure Prediction to Genomic Screens for Novel Non-Coding RNAs
Jan Gorodkin, Ivo L. Hofacker
PLoS Comput Biol. 2011 August; 7(8): e1002100. Published online 2011 August 4. doi: 10.1371/journal.pcbi.1002100
PMCID:
PMC3150283
Abstract Full Text PDF–868K
A study of alternative splicing in the pig
Ann-Britt Nygard, Susanna Cirera, Michael J Gilchrist, Jan Gorodkin, Claus B Jørgensen, Merete Fredholm
BMC Res Notes. 2010; 3: 123. Published online 2010 May 5. doi: 10.1186/1756-0500-3-123
PMCID:
PMC2882375
Abstract Full Text PDF–796K Supplementary Material
An Integrated Approach to Gene Discovery and Marker Development in Atlantic Cod (Gadus morhua)
Sharen Bowman, Sophie Hubert, Brent Higgins, Cynthia Stone, Jennifer Kimball, Tudor Borza, Jillian Tarrant Bussey, Gary Simpson, Catherine Kozera, Bruce A. Curtis, Jennifer R. Hall, Tiago S. Hori, Charles Y. Feng, Marlies Rise, Marije Booman, A. Kurt Gamperl, Edward Trippel, Jane Symonds, Stewart C. Johnson, Matthew L. Rise
Mar Biotechnol (NY) 2011 April; 13(2): 242–255. Published online 2010 April 16. doi: 10.1007/s10126-010-9285-z
PMCID:
PMC3084941
Abstract Full Text PDF–232K Supplementary Material
Assembly of 500,000 inter-specific catfish expressed sequence tags and large scale gene-associated marker development for whole genome association studies
Shaolin Wang, Eric Peatman, Jason Abernathy, Geoff Waldbieser, Erika Lindquist, Paul Richardson, Susan Lucas, Mei Wang, Ping Li, Jyothi Thimmapuram, Lei Liu, Deepika Vullaganti, Huseyin Kucuktas, Christopher Murdock, Brian C Small, Melanie Wilson, Hong Liu, Yanliang Jiang, Yoona Lee, Fei Chen, Jianguo Lu, Wenqi Wang, Peng Xu, Benjaporn Somridhivej, Puttharat Baoprasertkul, Jonas Quilang, Zhenxia Sha, Baolong Bao, Yaping Wang, Qun Wang, Tomokazu Takano, Samiran Nandi, Shikai Liu, Lilian Wong, Ludmilla Kaltenboeck, Sylvie Quiniou, Eva Bengten, Norman Miller, John Trant, Daniel Rokhsar, Zhanjiang Liu, the Catfish Genome Consortium
Genome Biol. 2010; 11(1): R8. Published online 2010 January 22. doi: 10.1186/gb-2010-11-1-r8
PMCID:
PMC2847720
Abstract Full Text PDF–737K Supplementary Material
454 pyrosequencing based transcriptome analysis of Zygaena filipendulae with focus on genes involved in biosynthesis of cyanogenic glucosides
Mika Zagrobelny, Karsten Scheibye-Alsing, Niels Bjerg Jensen, Birger Lindberg Møller, Jan Gorodkin, Søren Bak
BMC Genomics. 2009; 10: 574. Published online 2009 December 2. doi: 10.1186/1471-2164-10-574
PMCID:
PMC2791780
Abstract Full Text PDF–1.0M Supplementary Material
Association between SNPs within candidate genes and compounds related to boar taint and reproduction
Maren Moe, Sigbjørn Lien, Torunn Aasmundstad, Theo HE Meuwissen, Marianne HS Hansen, Christian Bendixen, Eli Grindflek
BMC Genet. 2009; 10: 32. Published online 2009 July 5. doi: 10.1186/1471-2156-10-32
PMCID:
PMC2723134
Abstract Full Text PDF–348K Supplementary Material
A robust linkage map of the porcine autosomes based on gene-associated SNPs
Rikke KK Vingborg, Vivi R Gregersen, Bujie Zhan, Frank Panitz, Anette Høj, Kirsten K Sørensen, Lone B Madsen, Knud Larsen, Henrik Hornshøj, Xuefei Wang, Christian Bendixen
BMC Genomics. 2009; 10: 134. Published online 2009 March 27. doi: 10.1186/1471-2164-10-134
PMCID:
PMC2674067
Abstract Full Text PDF–2.7M Supplementary Material
Cloning, characterization and expression analysis of porcine microRNAs
Alavala Matta Reddy, Yun Zheng, Guru Jagadeeswaran, Simone L Macmil, Wiley B Graham, Bruce A Roe, Udaya Desilva, Weixiong Zhang, Ramanjulu Sunkar
BMC Genomics. 2009; 10: 65. Published online 2009 February 5. doi: 10.1186/1471-2164-10-65
PMCID:
PMC2644714
Abstract Full Text PDF–1.2M Supplementary Material
Transcriptomic and proteomic profiling of two porcine tissues using high-throughput technologies
Henrik Hornshøj, Emøke Bendixen, Lene N Conley, Pernille K Andersen, Jakob Hedegaard, Frank Panitz, Christian Bendixen
BMC Genomics. 2009; 10: 30. Published online 2009 January 19. doi: 10.1186/1471-2164-10-30
PMCID:
PMC2633351
Abstract Full Text PDF–339K Supplementary Material
A Snapshot of CNVs in the Pig Genome
João Fadista, Marianne Nygaard, Lars-Erik Holm, Bo Thomsen, Christian Bendixen
PLoS ONE. 2008; 3(12): e3916. Published online 2008 December 16. doi: 10.1371/journal.pone.0003916
PMCID:
PMC2596487
Abstract Full Text PDF–494K Supplementary Material
Gene expression profiles in liver of pigs with extreme high and low levels of androstenone
Maren Moe, Sigbjørn Lien, Christian Bendixen, Jakob Hedegaard, Henrik Hornshøj, Ingunn Berget, Theo HE Meuwissen, Eli Grindflek
BMC Vet Res. 2008; 4: 29. Published online 2008 August 6. doi: 10.1186/1746-6148-4-29
PMCID:
PMC2535776
Abstract Full Text PDF–434K Supplementary Material
Phenotypic and genetic characterization of a novel phenotype in pigs characterized by juvenile hairlessness and age dependent emphysema
Camilla S Bruun, Claus B Jørgensen, Lene Bay, Susanna Cirera, Henrik E Jensen, Páll S Leifsson, Jens Nielsen, Knud Christensen, Merete Fredholm
BMC Genomics. 2008; 9: 283. Published online 2008 June 12. doi: 10.1186/1471-2164-9-283
PMCID:
PMC2474626
Abstract Full Text PDF–676K
Identification and characterization of an alternatively spliced variant of the MHC class I-related porcine neonatal Fc receptor for IgG
Lilin Ye, Wenbin Tuo, Xindong Liu, Neil E. Simister, Xiaoping Zhu
Dev Comp Immunol. Author manuscript; available in PMC 2009 January 1.
Published in final edited form as: Dev Comp Immunol. 2008; 32(8): 966–979. Published online 2008 February 20. doi: 10.1016/j.dci.2008.01.008
PMCID:
PMC2464570
Abstract Full Text PDF–1.4M
Characterization of a newly developed chicken 44K Agilent microarray
Xianyao Li, Hsin-I Chiang, James Zhu, Scot E Dowd, Huaijun Zhou
BMC Genomics. 2008; 9: 60. Published online 2008 January 31. doi: 10.1186/1471-2164-9-60
PMCID:
PMC2262898
Abstract Full Text PDF–1.4M Supplementary Material
Microarray Expression Profiles of 20.000 Genes across 23 Healthy Porcine Tissues
Henrik Hornshøj, Lene Nagstrup Conley, Jakob Hedegaard, Peter Sørensen, Frank Panitz, Christian Bendixen
PLoS ONE. 2007; 2(11): e1203. Published online 2007 November 21. doi: 10.1371/journal.pone.0001203
PMCID:
PMC2065904
Abstract Full Text PDF–1020K
Gene expression profiles in testis of pigs with extreme high and low levels of androstenone
Maren Moe, Theo Meuwissen, Sigbjørn Lien, Christian Bendixen, Xuefei Wang, Lene Nagstrup Conley, Ingunn Berget, Håvard Tajet, Eli Grindflek
BMC Genomics. 2007; 8: 405. Published online 2007 November 7. doi: 10.1186/1471-2164-8-405
PMCID:
PMC2204014
Abstract Full Text PDF–480K Supplementary Material
EST analysis on pig mitochondria reveal novel expression differences between developmental and adult tissues
Karsten Scheibye-Alsing, Susanna Cirera, Michael J Gilchrist, Merete Fredholm, Jan Gorodkin
BMC Genomics. 2007; 8: 367. Published online 2007 October 11. doi: 10.1186/1471-2164-8-367
PMCID:
PMC2194790
Abstract Full Text PDF–387K Supplementary Material
Molecular characterization and temporal expression profiling of presenilins in the developing porcine brain
Lone B Madsen, Bo Thomsen, Knud Larsen, Christian Bendixen, Ida E Holm, Merete Fredholm, Arne L Jørgensen, Anders L Nielsen
BMC Neurosci. 2007; 8: 72. Published online 2007 September 13. doi: 10.1186/1471-2202-8-72
PMCID:
PMC2034586
Abstract Full Text PDF–611K
Detection of RNA structures in porcine EST data and related mammals
Stefan E Seemann, Michael J Gilchrist, Ivo L Hofacker, Peter F Stadler, Jan Gorodkin
BMC Genomics. 2007; 8: 316. Published online 2007 September 10. doi: 10.1186/1471-2164-8-316
PMCID:
PMC2072958
Abstract Full Text PDF–849K Supplementary Material
Selection of reference genes for gene expression studies in pig tissues using SYBR green qPCR
Ann-Britt Nygard, Claus B Jørgensen, Susanna Cirera, Merete Fredholm
BMC Mol Biol. 2007; 8: 67. Published online 2007 August 15. doi: 10.1186/1471-2199-8-67
PMCID:
PMC2000887
Abstract Full Text PDF–263K
Molecular characterisation of the early response in pigs to experimental infection with Actinobacillus pleuropneumoniae using cDNA microarrays
Jakob Hedegaard, Kerstin Skovgaard, Shila Mortensen, Peter Sørensen, Tim K Jensen, Henrik Hornshøj, Christian Bendixen, Peter MH Heegaard
Acta Vet Scand. 2007; 49(1): 11. Published online 2007 April 27. doi: 10.1186/1751-0147-49-11
PMCID:
PMC1868913
Abstract Full Text PDF–385K Supplementary Material
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