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Data preparation and interannotator agreement: BioCreAtIvE Task 1B
Marc E Colosimo, Alexander A Morgan, Alexander S Yeh, Jeffrey B Colombe, Lynette Hirschman
BMC Bioinformatics. 2005; 6(Suppl 1): S12. Published online 2005 May 24. doi: 10.1186/1471-2105-6-S1-S12
PMCID:
PMC1869005
Abstract Full Text PDF–261K Supplementary Material

Is Cited by the Following 12 Articles in this Archive:

The gene normalization task in BioCreative III
Zhiyong Lu, Hung-Yu Kao, Chih-Hsuan Wei, Minlie Huang, Jingchen Liu, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tzong-Han Tsai, Hong-Jie Dai, Naoaki Okazaki, Han-Cheol Cho, Martin Gerner, Illes Solt, Shashank Agarwal, Feifan Liu, Dina Vishnyakova, Patrick Ruch, Martin Romacker, Fabio Rinaldi, Sanmitra Bhattacharya, Padmini Srinivasan, Hongfang Liu, Manabu Torii, Sergio Matos, David Campos, Karin Verspoor, Kevin M Livingston, W John Wilbur
BMC Bioinformatics. 2011; 12(Suppl 8): S2. Published online 2011 October 3. doi: 10.1186/1471-2105-12-S8-S2
PMCID:
PMC3269937
Abstract Full Text PDF–441K Supplementary Material
Exploring subdomain variation in biomedical language
Thomas Lippincott, Diarmuid Ó Séaghdha, Anna Korhonen
BMC Bioinformatics. 2011; 12: 212. Published online 2011 May 27. doi: 10.1186/1471-2105-12-212
PMCID:
PMC3118171
Abstract Full Text PDF–11M
Annotating genes and genomes with DNA sequences extracted from biomedical articles
Maximilian Haeussler, Martin Gerner, Casey M. Bergman
Bioinformatics. 2011 April 1; 27(7): 980–986. Published online 2011 February 16. doi: 10.1093/bioinformatics/btr043
PMCID:
PMC3065681
Abstract Full Text PDF–614K
Construction of an annotated corpus to support biomedical information extraction
Paul Thompson, Syed A Iqbal, John McNaught, Sophia Ananiadou
BMC Bioinformatics. 2009; 10: 349. Published online 2009 October 23. doi: 10.1186/1471-2105-10-349
PMCID:
PMC2774701
Abstract Full Text PDF–381K Supplementary Material
Collaborative text-annotation resource for disease-centered relation extraction from biomedical text
C. Cano, T. Monaghan, A. Blanco, D.P. Wall, L. Peshkin
J Biomed Inform. Author manuscript; available in PMC 2010 October 1.
Published in final edited form as: J Biomed Inform. 2009 October; 42(5): 967–977. Published online 2009 February 14. doi: 10.1016/j.jbi.2009.02.001
PMCID:
PMC2757509
Abstract Full Text PDF–2.0M
Identifying and classifying biomedical perturbations in text
Raul Rodriguez-Esteban, Phoebe M. Roberts, Matthew E. Crawford
Nucleic Acids Res. 2009 February; 37(3): 771–777. Published online 2009 February. doi: 10.1093/nar/gkn986
PMCID:
PMC2647287
Abstract Full Text PDF–1.9M
Overview of BioCreative II gene normalization
Alexander A Morgan, Zhiyong Lu, Xinglong Wang, Aaron M Cohen, Juliane Fluck, Patrick Ruch, Anna Divoli, Katrin Fundel, Robert Leaman, Jörg Hakenberg, Chengjie Sun, Heng-hui Liu, Rafael Torres, Michael Krauthammer, William W Lau, Hongfang Liu, Chun-Nan Hsu, Martijn Schuemie, K Bretonnel Cohen, Lynette Hirschman
Genome Biol. 2008; 9(Suppl 2): S3. Published online 2008 September 1. doi: 10.1186/gb-2008-9-s2-s3
PMCID:
PMC2559987
Abstract Full Text PDF–368K Supplementary Material
Seeking a New Biology through Text Mining
Andrey Rzhetsky, Michael Seringhaus, Mark Gerstein
Cell. Author manuscript; available in PMC 2009 September 1.
Published in final edited form as: Cell. 2008 July 11; 134(1): 9–13. doi: 10.1016/j.cell.2008.06.029
PMCID:
PMC2735884
Abstract Full Text PDF–36K Supplementary Material
Quantitative Assessment of Dictionary-based Protein Named Entity Tagging
Hongfang Liu, Zhang-Zhi Hu, Manabu Torii, Cathy Wu, Carol Friedman
J Am Med Inform Assoc. 2006 Sep-Oct; 13(5): 497–507. doi: 10.1197/jamia.M2085
PMCID:
PMC1561801
Abstract Full Text PDF–798K
Overview of BioCreAtIvE: critical assessment of information extraction for biology
Lynette Hirschman, Alexander Yeh, Christian Blaschke, Alfonso Valencia
BMC Bioinformatics. 2005; 6(Suppl 1): S1. Published online 2005 May 24. doi: 10.1186/1471-2105-6-S1-S1
PMCID:
PMC1869002
Abstract Full Text PDF–303K
Overview of BioCreAtIvE task 1B: normalized gene lists
Lynette Hirschman, Marc Colosimo, Alexander Morgan, Alexander Yeh
BMC Bioinformatics. 2005; 6(Suppl 1): S11. Published online 2005 May 24. doi: 10.1186/1471-2105-6-S1-S11
PMCID:
PMC1869004
Abstract Full Text PDF–262K
ProMiner: rule-based protein and gene entity recognition
Daniel Hanisch, Katrin Fundel, Heinz-Theodor Mevissen, Ralf Zimmer, Juliane Fluck
BMC Bioinformatics. 2005; 6(Suppl 1): S14. Published online 2005 May 24. doi: 10.1186/1471-2105-6-S1-S14
PMCID:
PMC1869006
Abstract Full Text PDF–284K
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