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Sense-antisense pairs in mammals: functional and evolutionary considerations
Pedro AF Galante, Daniel O Vidal, Jorge E de Souza, Anamaria A Camargo, Sandro J de Souza
Genome Biol. 2007; 8(3): R40. Published online 2007 March 19. doi: 10.1186/gb-2007-8-3-r40
PMCID:
PMC1868933
Abstract Full Text PDF–708K Supplementary Material

Is Cited by the Following 16 Articles in this Archive:

New Insights in the Sugarcane Transcriptome Responding to Drought Stress as Revealed by Supersage
Éderson Akio Kido, José Ribamar Costa Ferreira Neto, Roberta Lane de Oliveira Silva, Valesca Pandolfi, Ana Carolina Ribeiro Guimarães, Daniela Truffi Veiga, Sabrina Moutinho Chabregas, Sérgio Crovella, Ana Maria Benko-Iseppon
ScientificWorldJournal. 2012; 2012: 821062. Published online 2012 May 2. doi: 10.1100/2012/821062
PMCID:
PMC3353566
Abstract Full Text PDF–1.2M
Long non-coding RNAs: versatile master regulators of gene expression and crucial players in cancer
Lei Nie, Hsing-Ju Wu, Jung-Mao Hsu, Shih-Shin Chang, Adam M LaBaff, Chia-Wei Li, Yan Wang, Jennifer L. Hsu, Mien-Chie Hung
Am J Transl Res. 2012; 4(2): 127–150. Published online 2012 April 8.
PMCID:
PMC3353529
Abstract Full Text PDF–1.0M
Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual
Pedro A. F. Galante, Raphael B. Parmigiani, Qi Zhao, Otávia L. Caballero, Jorge E. de Souza, Fábio C. P. Navarro, Alexandra L. Gerber, Marisa F. Nicolás, Anna Christina M. Salim, Ana Paula M. Silva, Lee Edsall, Sylvie Devalle, Luiz G. Almeida, Zhen Ye, Samantha Kuan, Daniel G. Pinheiro, Israel Tojal, Renato G. Pedigoni, Rodrigo G. M. A. de Sousa, Thiago Y. K. Oliveira, Marcelo G. de Paula, Lucila Ohno-Machado, Ewen F. Kirkness, Samuel Levy, Wilson A. da Silva, Jr, Ana Tereza R. Vasconcelos, Bing Ren, Marco Antonio Zago, Robert L. Strausberg, Andrew J. G. Simpson, Sandro J. de Souza, Anamaria A. Camargo
Nucleic Acids Res. 2011 August; 39(14): 6056–6068. Published online 2011 April 14. doi: 10.1093/nar/gkr221
PMCID:
PMC3152357
Abstract Full Text PDF–7.9M Supplementary Material
Alternative splicing and genetic diversity: silencers are more frequently modified by SNVs associated with alternative exon/intron borders
Jorge E. S. de Souza, Rodrigo F. Ramalho, Pedro A. F. Galante, Diogo Meyer, Sandro J. de Souza
Nucleic Acids Res. 2011 July; 39(12): 4942–4948. Published online 2011 March 11. doi: 10.1093/nar/gkr081
PMCID:
PMC3130264
Abstract Full Text PDF–319K Supplementary Material
Alternative splicing enriched cDNA libraries identify breast cancer-associated transcripts
Elisa N Ferreira, Maria CR Rangel, Pedro F Galante, Jorge E de Souza, Gustavo C Molina, Sandro J de Souza, Dirce M Carraro
BMC Genomics. 2010; 11(Suppl 5): S4. Published online 2010 December 22. doi: 10.1186/1471-2164-11-S5-S4
PMCID:
PMC3045797
Abstract Full Text PDF–1.9M Supplementary Material
The Colorectal cancer disease-specific transcriptome may facilitate the discovery of more biologically and clinically relevant information
Wendy L Allen, Puthen V Jithesh, Gavin R Oliver, Irina Proutski, Daniel B Longley, Heinz-Josef Lenz, Vitali Proutski, Paul Harkin, Patrick G Johnston
BMC Cancer. 2010; 10: 687. Published online 2010 December 20. doi: 10.1186/1471-2407-10-687
PMCID:
PMC3018462
Abstract Full Text PDF–519K Supplementary Material
Integrative analysis of the human cis-antisense gene pairs, miRNAs and their transcription regulation patterns
Oleg V. Grinchuk, Piroon Jenjaroenpun, Yuriy L. Orlov, Jiangtao Zhou, Vladimir A. Kuznetsov
Nucleic Acids Res. 2010 January; 38(2): 534–547. Published online 2010 January. doi: 10.1093/nar/gkp954
PMCID:
PMC2811022
Abstract Full Text PDF–4.7M Supplementary Material
Estrogen Down-regulation of the Scx Gene Is Mediated by the Opposing Strand-overlapping Gene Bop1
Yukitomo Arao, Karen Carpenter, Sylvia Hewitt, Kenneth S. Korach
J Biol Chem. 2010 February 12; 285(7): 4806–4814. Published online 2009 December 8. doi: 10.1074/jbc.M109.036681
PMCID:
PMC2836086
Abstract Full Text Supplementary Material
Bioinformatics construction of the human cell surfaceome
J. P. C. da Cunha, P. A. F. Galante, J. E. de Souza, R. F. de Souza, P. M. Carvalho, D. T. Ohara, R. P. Moura, S. M. Oba-Shinja, S. K. N. Marie, W. A. Silva, Jr, R. O. Perez, B. Stransky, M. Pieprzyk, J. Moore, O. Caballero, J. Gama-Rodrigues, A. Habr-Gama, W. P. Kuo, A. J. Simpson, A. A. Camargo, Lloyd J. Old, S. J. de Souza
Proc Natl Acad Sci U S A. 2009 September 29; 106(39): 16752–16757. Published online 2009 September 15. doi: 10.1073/pnas.0907939106
PMCID:
PMC2757864
Abstract Full Text PDF–1.6M Supplementary Material
Identification of novel endogenous antisense transcripts by DNA microarray analysis targeting complementary strand of annotated genes
Koji Numata, Yuko Osada, Yuki Okada, Rintaro Saito, Noriko Hiraiwa, Hajime Nakaoka, Naoyuki Yamamoto, Kazufumi Watanabe, Kazue Okubo, Chihiro Kohama, Akio Kanai, Kuniya Abe, Hidenori Kiyosawa
BMC Genomics. 2009; 10: 392. Published online 2009 August 22. doi: 10.1186/1471-2164-10-392
PMCID:
PMC2741491
Abstract Full Text PDF–1.1M Supplementary Material
Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues
Anita Grigoriadis, Gavin R Oliver, Austin Tanney, Howard Kendrick, Matt J Smalley, Parmjit Jat, A Munro Neville
BMC Genomics. 2009; 10: 324. Published online 2009 July 17. doi: 10.1186/1471-2164-10-324
PMCID:
PMC2721853
Abstract Full Text PDF–661K Supplementary Material
No-match ORESTES explored as tumor markers
Barbara P. Mello, Eduardo F. Abrantes, César H. Torres, Ariane Machado-Lima, Rogério da Silva Fonseca, Dirce M. Carraro, Ricardo R. Brentani, Luiz F. L. Reis, Helena Brentani
Nucleic Acids Res. 2009 May; 37(8): 2607–2617. Published online 2009 May. doi: 10.1093/nar/gkp074
PMCID:
PMC2677862
Abstract Full Text PDF–494K Supplementary Material
SuperSAGE: the drought stress-responsive transcriptome of chickpea roots
Carlos Molina, Björn Rotter, Ralf Horres, Sripada M Udupa, Bert Besser, Luis Bellarmino, Michael Baum, Hideo Matsumura, Ryohei Terauchi, Günter Kahl, Peter Winter
BMC Genomics. 2008; 9: 553. Published online 2008 November 24. doi: 10.1186/1471-2164-9-553
PMCID:
PMC2628679
Abstract Full Text PDF–1.4M Supplementary Material
Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription
Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell, Keith J Edwards
BMC Genomics. 2008; 9: 475. Published online 2008 October 10. doi: 10.1186/1471-2164-9-475
PMCID:
PMC2584110
Abstract Full Text PDF–438K Supplementary Material
Non-random retention of protein-coding overlapping genes in Metazoa
Giulia Soldà, Mikita Suyama, Paride Pelucchi, Silvia Boi, Alessandro Guffanti, Ermanno Rizzi, Peer Bork, Maria Luisa Tenchini, Francesca D Ciccarelli
BMC Genomics. 2008; 9: 174. Published online 2008 April 16. doi: 10.1186/1471-2164-9-174
PMCID:
PMC2330155
Abstract Full Text PDF–1.9M Supplementary Material
Overlapping genes in the human and mouse genomes
Chaitanya R Sanna, Wen-Hsiung Li, Liqing Zhang
BMC Genomics. 2008; 9: 169. Published online 2008 April 14. doi: 10.1186/1471-2164-9-169
PMCID:
PMC2335118
Abstract Full Text PDF–337K
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