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Interrupted coding sequences in Mycobacterium smegmatis: authentic mutations or sequencing errors?
Caroline Deshayes, Emmanuel Perrodou, Sebastien Gallien, Daniel Euphrasie, Christine Schaeffer, Alain Van-Dorsselaer, Olivier Poch, Odile Lecompte, Jean-Marc Reyrat
Genome Biol. 2007; 8(2): R20. Published online 2007 February 12. doi: 10.1186/gb-2007-8-2-r20
PMCID:
PMC1852416
Abstract Full Text PDF–645K

Is Cited by the Following 10 Articles in this Archive:

High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade
Joseph A Christie-Oleza, Guylaine Miotello, Jean Armengaud
BMC Genomics. 2012; 13: 73. Published online 2012 February 15. doi: 10.1186/1471-2164-13-73
PMCID:
PMC3305630
Abstract Full Text PDF–472K Supplementary Material
A Pilot Study of Bacterial Genes with Disrupted ORFs Reveals a Surprising Profusion of Protein Sequence Recoding Mediated by Ribosomal Frameshifting and Transcriptional Realignment
Virag Sharma, Andrew E. Firth, Ivan Antonov, Olivier Fayet, John F. Atkins, Mark Borodovsky, Pavel V. Baranov
Mol Biol Evol. 2011 November; 28(11): 3195–3211. Published online 2011 June 14. doi: 10.1093/molbev/msr155
PMCID:
PMC3199440
Free in PMC on 2012/11/01
Identification of the Monooxygenase Gene Clusters Responsible for the Regioselective Oxidation of Phenol to Hydroquinone in Mycobacteria
Toshiki Furuya, Satomi Hirose, Hisashi Osanai, Hisashi Semba, Kuniki Kino
Appl Environ Microbiol. 2011 February; 77(4): 1214–1220. Published online 2010 December 23. doi: 10.1128/AEM.02316-10
PMCID:
PMC3067212
Abstract Full Text PDF–376K
Proteomics-based confirmation of protein expression and correction of annotation errors in the Brucella abortus genome
Julie Lamontagne, Maxime Béland, Anik Forest, Alexandra Côté-Martin, Najib Nassif, Fadi Tomaki, Ignacio Moriyón, Edgardo Moreno, Eustache Paramithiotis
BMC Genomics. 2010; 11: 300. Published online 2010 May 12. doi: 10.1186/1471-2164-11-300
PMCID:
PMC2877026
Abstract Full Text PDF–822K Supplementary Material
Proteomics-based Refinement of Deinococcus deserti Genome Annotation Reveals an Unwonted Use of Non-canonical Translation Initiation Codons
Mathieu Baudet, Philippe Ortet, Jean-Charles Gaillard, Bernard Fernandez, Philippe Guérin, Christine Enjalbal, Gilles Subra, Arjan de Groot, Mohamed Barakat, Alain Dedieu, Jean Armengaud
Mol Cell Proteomics. 2010 February; 9(2): 415–426. Published online 2009 October 29. doi: 10.1074/mcp.M900359-MCP200
PMCID:
PMC2830850
Abstract Full Text Supplementary Material
Optical mapping of the Mycobacterium avium subspecies paratuberculosis genome
Chia-wei Wu, Timothy M Schramm, Shiguo Zhou, David C Schwartz, Adel M Talaat
BMC Genomics. 2009; 10: 25. Published online 2009 January 15. doi: 10.1186/1471-2164-10-25
PMCID:
PMC2633350
Abstract Full Text PDF–2.9M Supplementary Material
Ortho-proteogenomics: Multiple proteomes investigation through orthology and a new MS-based protocol
Sébastien Gallien, Emmanuel Perrodou, Christine Carapito, Caroline Deshayes, Jean-Marc Reyrat, Alain Van Dorsselaer, Olivier Poch, Christine Schaeffer, Odile Lecompte
Genome Res. 2009 January; 19(1): 128–135. doi: 10.1101/gr.081901.108
PMCID:
PMC2612966
Abstract Full Text PDF–382K
High accuracy mass spectrometry analysis as a tool to verify and improve gene annotation using Mycobacterium tuberculosis as an example
Gustavo A de Souza, Hiwa Målen, Tina Søfteland, Gisle Sælensminde, Swati Prasad, Inge Jonassen, Harald G Wiker
BMC Genomics. 2008; 9: 316. Published online 2008 July 2. doi: 10.1186/1471-2164-9-316
PMCID:
PMC2483986
Abstract Full Text PDF–394K Supplementary Material
Comparative genomics-based investigation of resequencing targets in Vibrio fischeri: Focus on point miscalls and artefactual expansions
Mark J Mandel, Eric V Stabb, Edward G Ruby
BMC Genomics. 2008; 9: 138. Published online 2008 March 25. doi: 10.1186/1471-2164-9-138
PMCID:
PMC2330054
Abstract Full Text PDF–467K Supplementary Material
Detecting the molecular scars of evolution in the Mycobacterium tuberculosis complex by analyzing interrupted coding sequences
Caroline Deshayes, Emmanuel Perrodou, Daniel Euphrasie, Eric Frapy, Olivier Poch, Pablo Bifani, Odile Lecompte, Jean-Marc Reyrat
BMC Evol Biol. 2008; 8: 78. Published online 2008 March 6. doi: 10.1186/1471-2148-8-78
PMCID:
PMC2277376
Abstract Full Text PDF–395K Supplementary Material
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