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A network perspective on the evolution of metabolism by gene duplication
Juan Javier Díaz-Mejía, Ernesto Pérez-Rueda, Lorenzo Segovia
Genome Biol. 2007; 8(2): R26. Published online 2007 February 27. doi: 10.1186/gb-2007-8-2-r26
PMCID:
PMC1852415
Abstract Full Text PDF–755K Supplementary Material
 Is Cited by the Following 10 Articles in this Archive:
Horizontal and vertical growth of S. cerevisiae metabolic network
Luigi Grassi, Anna Tramontano
BMC Evol Biol. 2011; 11: 301. Published online 2011 October 14. doi: 10.1186/1471-2148-11-301
PMCID:
PMC3216907
Abstract Full Text PDF–304K Supplementary Material
Metabolic Network Modularity in Archaea Depends on Growth Conditions
Kazuhiro Takemoto, Suritalatu Borjigin
PLoS One. 2011; 6(10): e25874. Published online 2011 October 6. doi: 10.1371/journal.pone.0025874
PMCID:
PMC3188556
Abstract Full Text PDF–255K Supplementary Material
Difference in the distribution pattern of substrate enzymes in the metabolic network of Escherichia coli, according to chaperonin requirement
Kazuhiro Takemoto, Tatsuya Niwa, Hideki Taguchi
BMC Syst Biol. 2011; 5: 98. Published online 2011 June 24. doi: 10.1186/1752-0509-5-98
PMCID:
PMC3146850
Abstract Full Text PDF–651K Supplementary Material
Metabolic pathway alignment between species using a comprehensive and flexible similarity measure
Yunlei Li, Dick de Ridder, Marco JL de Groot, Marcel JT Reinders
BMC Syst Biol. 2008; 2: 111. Published online 2008 December 24. doi: 10.1186/1752-0509-2-111
PMCID:
PMC2677397
Abstract Full Text PDF–721K
Network-based approaches for linking metabolism with environment
Sarath Chandra Janga, M Madan Babu
Genome Biol. 2008; 9(11): 239. Published online 2008 November 24. doi: 10.1186/gb-2008-9-11-239
PMCID:
PMC2614483
Abstract Full Text PDF–135K
Origin of structural difference in metabolic networks with respect to temperature
Kazuhiro Takemoto, Tatsuya Akutsu
BMC Syst Biol. 2008; 2: 82. Published online 2008 September 22. doi: 10.1186/1752-0509-2-82
PMCID:
PMC2564917
Abstract Full Text PDF–461K Supplementary Material
Evolutionarily Conserved Substrate Substructures for Automated Annotation of Enzyme Superfamilies
Ranyee A. Chiang, Andrej Sali, Patricia C. Babbitt
PLoS Comput Biol. 2008 August; 4(8): e1000142. Published online 2008 August 1. doi: 10.1371/journal.pcbi.1000142
PMCID:
PMC2453236
Abstract Full Text PDF–522K Supplementary Material
The hidden universal distribution of amino acid biosynthetic networks: a genomic perspective on their origins and evolution
Georgina Hernández-Montes, J Javier Díaz-Mejía, Ernesto Pérez-Rueda, Lorenzo Segovia
Genome Biol. 2008; 9(6): R95. Published online 2008 June 9. doi: 10.1186/gb-2008-9-6-r95
PMCID:
PMC2481427
Abstract Full Text PDF–537K Supplementary Material
Development of Genomic Sciences in Mexico: A Good Start and a Long Way to Go
Rafael Palacios, Julio Collado-Vides
PLoS Comput Biol. 2007 September; 3(9): e143. Published online 2007 September 28. doi: 10.1371/journal.pcbi.0030143
PMCID:
PMC1994971
Full Text PDF–124K
Correlation between structure and temperature in prokaryotic metabolic networks
Kazuhiro Takemoto, Jose C Nacher, Tatsuya Akutsu
BMC Bioinformatics. 2007; 8: 303. Published online 2007 August 21. doi: 10.1186/1471-2105-8-303
PMCID:
PMC2045116
Abstract Full Text PDF–426K Supplementary Material
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