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DNA variation and brain region-specific expression profiles exhibit different relationships between inbred mouse strains: implications for eQTL mapping studies
Iiris Hovatta, Matthew A Zapala, Ron S Broide, Eric E Schadt, Ondrej Libiger, Nicholas J Schork, David J Lockhart, Carrolee Barlow
Genome Biol. 2007; 8(2): R25. Published online 2007 February 26. doi: 10.1186/gb-2007-8-2-r25
PMCID:
PMC1852412
Abstract Full Text PDF–796K Supplementary Material

Is Cited by the Following 21 Articles in this Archive:

Drosophila melanogaster as a model for lead neurotoxicology and toxicogenomics research
Helmut V. B. Hirsch, Gregory Lnenicka, Debra Possidente, Bernard Possidente, Mark D. Garfinkel, Luan Wang, Xiangyi Lu, Douglas M. Ruden
Front Genet. 2012; 3: 68. Published online 2012 May 4. doi: 10.3389/fgene.2012.00068
PMCID:
PMC3343274
Abstract Full Text PDF–2.4M
MicroRNA Expression Profiling Reveals MiRNA Families Regulating Specific Biological Pathways in Mouse Frontal Cortex and Hippocampus
Juuso Juhila, Tessa Sipilä, Katherine Icay, Daniel Nicorici, Pekka Ellonen, Aleksi Kallio, Eija Korpelainen, Dario Greco, Iiris Hovatta
PLoS One. 2011; 6(6): e21495. Published online 2011 June 22. doi: 10.1371/journal.pone.0021495
PMCID:
PMC3120887
Abstract Full Text PDF–951K Supplementary Material
Molecular Profiles of Drinking Alcohol to Intoxication in C57BL/6J Mice
Megan K. Mulligan, Justin S. Rhodes, John C. Crabbe, R. Dayne Mayfield, R. Adron Harris, Igor Ponomarev
Alcohol Clin Exp Res. Author manuscript; available in PMC 2012 April 1.
Published in final edited form as: Alcohol Clin Exp Res. 2011 April; 35(4): 659–670. Published online 2011 January 11. doi: 10.1111/j.1530-0277.2010.01384.x
PMCID:
PMC3066294
Abstract Full Text PDF–1.9M Supplementary Material
Copy number variation modifies expression time courses
Evelyne Chaignat, Emilie Aït Yahya-Graison, Charlotte N. Henrichsen, Jacqueline Chrast, Frédéric Schütz, Sylvain Pradervand, Alexandre Reymond
Genome Res. 2011 January; 21(1): 106–113. doi: 10.1101/gr.112748.110
PMCID:
PMC3012917
Abstract Full Text PDF–661K
Divergent and nonuniform gene expression patterns in mouse brain
John A. Morris, Joshua J. Royall, Darren Bertagnolli, Andrew F. Boe, Josh J. Burnell, Emi J. Byrnes, Cathy Copeland, Tsega Desta, Shanna R. Fischer, Jeff Goldy, Katie J. Glattfelder, Jolene M. Kidney, Tracy Lemon, Geralyn J. Orta, Sheana E. Parry, Sayan D. Pathak, Owen C. Pearson, Melissa Reding, Sheila Shapouri, Kimberly A. Smith, Chad Soden, Beth M. Solan, John Weller, Joseph S. Takahashi, Caroline C. Overly, Ed S. Lein, Michael J. Hawrylycz, John G. Hohmann, Allan R. Jones
Proc Natl Acad Sci U S A. 2010 November 2; 107(44): 19049–19054. Published online 2010 October 18. doi: 10.1073/pnas.1003732107
PMCID:
PMC2973884
Abstract Full Text PDF–1.2M Supplementary Material
Mapping of numerous disease-associated expression polymorphisms in primary peripheral blood CD4+ lymphocytes
Amy Murphy, Jen-Hwa Chu, Mousheng Xu, Vincent J. Carey, Ross Lazarus, Andy Liu, Stanley J. Szefler, Robert Strunk, Karen DeMuth, Mario Castro, Nadia N. Hansel, Gregory B. Diette, Becky M. Vonakis, N. Franklin Adkinson, Jr, Barbara J. Klanderman, Jody Senter-Sylvia, John Ziniti, Christoph Lange, Tomi Pastinen, Benjamin A. Raby
Hum Mol Genet. 2010 December 1; 19(23): 4745–4757. Published online 2010 September 10. doi: 10.1093/hmg/ddq392
PMCID:
PMC2972694
Abstract Full Text PDF–406K Supplementary Material
Genotype and expression analysis of two inbred mouse strains and two derived congenic strains suggest that most gene expression is trans regulated and sensitive to genetic background
Harry A Noyes, Morris Agaba, Susan Anderson, Alan L Archibald, Andy Brass, John Gibson, Laurence Hall, Helen Hulme, Sung Jong Oh, Stephen Kemp
BMC Genomics. 2010; 11: 361. Published online 2010 June 7. doi: 10.1186/1471-2164-11-361
PMCID:
PMC2896378
Abstract Full Text PDF–675K Supplementary Material
New Insights into the Genetic Control of Gene Expression using a Bayesian Multi-tissue Approach
Enrico Petretto, Leonardo Bottolo, Sarah R. Langley, Matthias Heinig, Chris McDermott-Roe, Rizwan Sarwar, Michal Pravenec, Norbert Hübner, Timothy J. Aitman, Stuart A. Cook, Sylvia Richardson
PLoS Comput Biol. 2010 April; 6(4): e1000737. Published online 2010 April 8. doi: 10.1371/journal.pcbi.1000737
PMCID:
PMC2851562
Abstract Full Text PDF–600K Supplementary Material
Trait-Associated SNPs Are More Likely to Be eQTLs: Annotation to Enhance Discovery from GWAS
Dan L. Nicolae, Eric Gamazon, Wei Zhang, Shiwei Duan, M. Eileen Dolan, Nancy J. Cox
PLoS Genet. 2010 April; 6(4): e1000888. Published online 2010 April 1. doi: 10.1371/journal.pgen.1000888
PMCID:
PMC2848547
Abstract Full Text PDF–476K Supplementary Material
Gene expression profiling in C57BL/6J and A/J mouse inbred strains reveals gene networks specific for brain regions independent of genetic background
Simone de Jong S, Tova F Fuller, Esther Janson, Eric Strengman, Steve Horvath, Martien JH Kas, Roel A Ophoff
BMC Genomics. 2010; 11: 20. Published online 2010 January 11. doi: 10.1186/1471-2164-11-20
PMCID:
PMC2823687
Abstract Full Text PDF–1.6M Supplementary Material
Promoter architecture and the evolvability of gene expression
Itay Tirosh, Naama Barkai, Kevin J Verstrepen
J Biol. 2009; 8(11): 95. Published online 2009 December 14. doi: 10.1186/jbiol204
PMCID:
PMC2804285
Abstract Full Text PDF–177K
Genetical Toxicogenomics in Drosophila Identifies Master Modulatory Loci that are Regulated by Developmental Exposure to Lead
Douglas M. Ruden, Lang Chen, Debra Possidente, Bernard Possidente, Parsa Rasouli, Luan Wang, Xiangyi Lu, Mark D. Garfinkel, Helmut V. B. Hirsch, Grier P. Page
Neurotoxicology. Author manuscript; available in PMC 2010 November 1.
Published in final edited form as: Neurotoxicology. 2009 November; 30(6): 898–914. Published online 2009 September 6. doi: 10.1016/j.neuro.2009.08.011
PMCID:
PMC2789871
Abstract Full Text PDF–5.0M Supplementary Material
Expression quantitative trait loci detected in cell lines are often present in primary tissues
Kevin Bullaughey, Claudia I. Chavarria, Graham Coop, Yoav Gilad
Hum Mol Genet. 2009 November 15; 18(22): 4296–4303. Published online 2009 August 11. doi: 10.1093/hmg/ddp382
PMCID:
PMC2766291
Abstract Full Text PDF–292K Supplementary Material
New TFII-I family target genes involved in embryonic development
Aleksandr V. Makeyev, Dashzeveg Bayarsaihan
Biochem Biophys Res Commun. Author manuscript; available in PMC 2011 May 11.
Published in final edited form as: Biochem Biophys Res Commun. 2009 September 4; 386(4): 554–558. Published online 2009 June 13. doi: 10.1016/j.bbrc.2009.06.045
PMCID:
PMC3092703
Abstract Full Text PDF–74K
Intra- and inter-individual genetic differences in gene expression
Mark J. Cowley, Chris J. Cotsapas, Rohan B. H. Williams, Eva K. F. Chan, Jeremy N. Pulvers, Michael Y. Liu, Oscar J. Luo, David J. Nott, Peter F. R. Little
Mamm Genome. 2009 May; 20(5): 281–295. Published online 2009 May 8. doi: 10.1007/s00335-009-9181-x
PMCID:
PMC2690833
Abstract Full Text PDF–626K Supplementary Material
Interspecies genetics of eating disorder traits
Martien J. H. Kas, Walter H. Kaye, Wendy Foulds Mathes, Cynthia M. Bulik
Am J Med Genet B Neuropsychiatr Genet. Author manuscript; available in PMC 2010 April 5.
Published in final edited form as: Am J Med Genet B Neuropsychiatr Genet. 2009 April 5; 150B(3): 318–327. doi: 10.1002/ajmg.b.30832
PMCID:
PMC2660386
Abstract Full Text PDF–86K
Correlational analysis for identifying genes whose regulation contributes to chronic neuropathic pain
Anna-Karin Persson, Mathias Gebauer, Suzana Jordan, Christiane Metz-Weidmann, Anke M Schulte, Hans-Christoph Schneider, Danping Ding-Pfennigdorff, Jonas Thun, Xiao-Jun Xu, Zsuzsanna Wiesenfeld-Hallin, Ariel Darvasi, Kaj Fried, Marshall Devor
Mol Pain. 2009; 5: 7. Published online 2009 February 19. doi: 10.1186/1744-8069-5-7
PMCID:
PMC2649910
Abstract Full Text PDF–1.1M Supplementary Material
Gene–Environment Interaction in Yeast Gene Expression
Erin N Smith, Leonid Kruglyak
PLoS Biol. 2008 April; 6(4): e83. Published online 2008 April 15. doi: 10.1371/journal.pbio.0060083
PMCID:
PMC2292755
Abstract Full Text PDF–874K Supplementary Material
Brain expression—is it all in our SNPs?
Philipp Khaitovich
Mol Syst Biol. 2007; 3: 155. Published online 2007 December 18. doi: 10.1038/msb4100199
PMCID:
PMC2174631
Full Text PDF–65K
Detecting genetic variation in microarray expression data
Jennifer A. Greenhall, Matthew A. Zapala, Mario Cáceres, Ondrej Libiger, Carrolee Barlow, Nicholas J. Schork, David J. Lockhart
Genome Res. 2007 August; 17(8): 1228–1235. doi: 10.1101/gr.6307307
PMCID:
PMC1933513
Abstract Full Text PDF–329K
Morphine effects on striatal transcriptome in mice
Michal Korostynski, Marcin Piechota, Dorota Kaminska, Wojciech Solecki, Ryszard Przewlocki
Genome Biol. 2007; 8(6): R128. Published online 2007 June 28. doi: 10.1186/gb-2007-8-6-r128
PMCID:
PMC2394777
Abstract Full Text PDF–3.0M Supplementary Material
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