pmc logo image
DarkHorse: a method for genome-wide prediction of horizontal gene transfer
Sheila Podell, Terry Gaasterland
Genome Biol. 2007; 8(2): R16. Published online 2007 February 2. doi: 10.1186/gb-2007-8-2-r16
PMCID:
PMC1852411
Abstract Full Text PDF–403K Supplementary Material
 Is Cited by the Following 13 Articles in this Archive:
Origin and Evolution of Eukaryotic Large Nucleo-Cytoplasmic DNA Viruses
Eugene V. Koonin, Natalya Yutin
Intervirology. 2010 June; 53(5): 284–292. Published online 2010 June 15. doi: 10.1159/000312913
PMCID:
PMC2895762
Abstract Full Text PDF–207K
Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus
Ludovic V Mallet, Jennifer Becq, Patrick Deschavanne
BMC Genomics. 2010; 11: 171. Published online 2010 March 12. doi: 10.1186/1471-2164-11-171
PMCID:
PMC2848249
Abstract Full Text PDF–1.8M Supplementary Material
The Genome Sequence of the Rumen Methanogen Methanobrevibacter ruminantium Reveals New Possibilities for Controlling Ruminant Methane Emissions
Sinead C. Leahy, William J. Kelly, Eric Altermann, Ron S. Ronimus, Carl J. Yeoman, Diana M. Pacheco, Dong Li, Zhanhao Kong, Sharla McTavish, Carrie Sang, Suzanne C. Lambie, Peter H. Janssen, Debjit Dey, Graeme T. Attwood
PLoS One. 2010; 5(1): e8926. Published online 2010 January 28. doi: 10.1371/journal.pone.0008926
PMCID:
PMC2812497
Abstract Full Text PDF–1.3M Supplementary Material
Stratification of co-evolving genomic groups using ranked phylogenetic profiles
Shiri Freilich, Leon Goldovsky, Assaf Gottlieb, Eric Blanc, Sophia Tsoka, Christos A Ouzounis
BMC Bioinformatics. 2009; 10: 355. Published online 2009 October 27. doi: 10.1186/1471-2105-10-355
PMCID:
PMC2775751
Abstract Full Text PDF–670K Supplementary Material
Are algal genes in nonphotosynthetic protists evidence of historical plastid endosymbioses?
John W Stiller, Jinling Huang, Qin Ding, Jing Tian, Carol Goodwillie
BMC Genomics. 2009; 10: 484. Published online 2009 October 20. doi: 10.1186/1471-2164-10-484
PMCID:
PMC2770532
Abstract Full Text PDF–1.0M Supplementary Material
On the chimeric nature, thermophilic origin, and phylogenetic placement of the Thermotogales
Olga Zhaxybayeva, Kristen S. Swithers, Pascal Lapierre, Gregory P. Fournier, Derek M. Bickhart, Robert T. DeBoy, Karen E. Nelson, Camilla L. Nesbø, W. Ford Doolittle, J. Peter Gogarten, Kenneth M. Noll
Proc Natl Acad Sci U S A. 2009 April 7; 106(14): 5865–5870. Published online 2009 March 23. doi: 10.1073/pnas.0901260106
PMCID:
PMC2667022
Abstract Full Text PDF–702K Supplementary Material
TACOA – Taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach
Naryttza N Diaz, Lutz Krause, Alexander Goesmann, Karsten Niehaus, Tim W Nattkemper
BMC Bioinformatics. 2009; 10: 56. Published online 2009 February 11. doi: 10.1186/1471-2105-10-56
PMCID:
PMC2653487
Abstract Full Text PDF–1.2M Supplementary Material
Horizontal Gene Transfers in prokaryotes show differential preferences for metabolic and translational genes
Aditi Kanhere, Martin Vingron
BMC Evol Biol. 2009; 9: 9. Published online 2009 January 10. doi: 10.1186/1471-2148-9-9
PMCID:
PMC2651853
Abstract Full Text PDF–576K Supplementary Material
The Genome of Thermosipho africanus TCF52B: Lateral Genetic Connections to the Firmicutes and Archaea
Camilla L. Nesbø, Eric Bapteste, Bruce Curtis, Håkon Dahle, Philippe Lopez, Dave Macleod, Marlena Dlutek, Sharen Bowman, Olga Zhaxybayeva, Nils-Kåre Birkeland, W. Ford Doolittle
J Bacteriol. 2009 March; 191(6): 1974–1978. Published online 2009 January 5. doi: 10.1128/JB.01448-08
PMCID:
PMC2648366
Abstract Full Text PDF–243K Supplementary Material
A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm
Sheila Podell, Terry Gaasterland, Eric E Allen
BMC Bioinformatics. 2008; 9: 419. Published online 2008 October 7. doi: 10.1186/1471-2105-9-419
PMCID:
PMC2573894
Abstract Full Text PDF–699K Supplementary Material
Detecting Horizontally Transferred and Essential Genes Based on Dinucleotide Relative Abundance
Robert H. Baran, Hanseok Ko
DNA Res. 2008 October; 15(5): 267–276. Published online 2008 September 16. doi: 10.1093/dnares/dsn021
PMCID:
PMC2575891
Abstract Full Text PDF–162K
Genomic Insights into Mn(II) Oxidation by the Marine Alphaproteobacterium Aurantimonas sp. Strain SI85-9A1
Gregory J. Dick, Sheila Podell, Hope A. Johnson, Yadira Rivera-Espinoza, Rizlan Bernier-Latmani, James K. McCarthy, Justin W. Torpey, Brian G. Clement, Terry Gaasterland, Bradley M. Tebo
Appl Environ Microbiol. 2008 May; 74(9): 2646–2658. Published online 2008 March 14. doi: 10.1128/AEM.01656-07
PMCID:
PMC2394881
Abstract Full Text PDF–2.0M Supplementary Material
Identification of multiple independent horizontal gene transfers into poxviruses using a comparative genomics approach
Kirsten A Bratke, Aoife McLysaght
BMC Evol Biol. 2008; 8: 67. Published online 2008 February 27. doi: 10.1186/1471-2148-8-67
PMCID:
PMC2268676
Abstract Full Text PDF–592K Supplementary Material
You are here: NCBI > Literature > PubMed Central
Write to the Help Desk