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RNA-editing-mediated exon evolution
Galit Lev-Maor, Rotem Sorek, Erez Y Levanon, Nurit Paz, Eli Eisenberg, Gil Ast
Genome Biol. 2007; 8(2): R29. Published online 2007 February 27. doi: 10.1186/gb-2007-8-2-r29
PMCID:
PMC1852406
Abstract Full Text PDF–1.1M Supplementary Material
 Is Cited by the Following 25 Articles in this Archive:
Identification of Widespread Ultra-Edited Human RNAs
Shai Carmi, Itamar Borukhov, Erez Y. Levanon
PLoS Genet. 2011 October; 7(10): e1002317. Published online 2011 October 20. doi: 10.1371/journal.pgen.1002317
PMCID:
PMC3197674
Abstract Full Text PDF–817K Supplementary Material
Compensatory signals associated with the activation of human GC 5′ splice sites
Jana Kralovicova, Gyulin Hwang, A. Charlotta Asplund, Alexander Churbanov, C. I. Edvard Smith, Igor Vorechovsky
Nucleic Acids Res. 2011 September; 39(16): 7077–7091. Published online 2011 May 23. doi: 10.1093/nar/gkr306
PMCID:
PMC3167603
Abstract Full Text PDF–5.3M Supplementary Material
Consistent levels of A-to-I RNA editing across individuals in coding sequences and non-conserved Alu repeats
Shoshana Greenberger, Erez Y Levanon, Nurit Paz-Yaacov, Aviv Barzilai, Michal Safran, Sivan Osenberg, Ninette Amariglio, Gideon Rechavi, Eli Eisenberg
BMC Genomics. 2010; 11: 608. Published online 2010 October 28. doi: 10.1186/1471-2164-11-608
PMCID:
PMC3091749
Abstract Full Text PDF–525K Supplementary Material
Large-scale analysis of structural, sequence and thermodynamic characteristics of A-to-I RNA editing sites in human Alu repeats
Yoav Kleinberger, Eli Eisenberg
BMC Genomics. 2010; 11: 453. Published online 2010 July 28. doi: 10.1186/1471-2164-11-453
PMCID:
PMC3091650
Abstract Full Text PDF–329K
Alu Sequences in Undifferentiated Human Embryonic Stem Cells Display High Levels of A-to-I RNA Editing
Sivan Osenberg, Nurit Paz Yaacov, Michal Safran, Sharon Moshkovitz, Ronit Shtrichman, Ofra Sherf, Jasmine Jacob-Hirsch, Gilmor Keshet, Ninette Amariglio, Joseph Itskovitz-Eldor, Gideon Rechavi
PLoS One. 2010; 5(6): e11173. Published online 2010 June 21. doi: 10.1371/journal.pone.0011173
PMCID:
PMC2888580
Abstract Full Text PDF–451K Supplementary Material
Adenosine-to-inosine RNA editing shapes transcriptome diversity in primates
Nurit Paz-Yaacov, Erez Y. Levanon, Eviatar Nevo, Yaron Kinar, Alon Harmelin, Jasmine Jacob-Hirsch, Ninette Amariglio, Eli Eisenberg, Gideon Rechavi
Proc Natl Acad Sci U S A. 2010 July 6; 107(27): 12174–12179. Published online 2010 June 21. doi: 10.1073/pnas.1006183107
PMCID:
PMC2901480
Abstract Full Text PDF–597K Supplementary Material
The role of transposable elements in the evolution of non-mammalian vertebrates and invertebrates
Noa Sela, Eddo Kim, Gil Ast
Genome Biol. 2010; 11(6): R59. Published online 2010 June 2. doi: 10.1186/gb-2010-11-6-r59
PMCID:
PMC2911107
Abstract Full Text PDF–1.6M Supplementary Material
Characteristics of Transposable Element Exonization within Human and Mouse
Noa Sela, Britta Mersch, Agnes Hotz-Wagenblatt, Gil Ast
PLoS One. 2010; 5(6): e10907. Published online 2010 June 1. doi: 10.1371/journal.pone.0010907
PMCID:
PMC2879366
Abstract Full Text PDF–521K Supplementary Material
Molecular Diversity through RNA Editing: A Balancing Act
Sanaz Farajollahi, Stefan Maas
Trends Genet. Author manuscript; available in PMC 2011 May 1.
Published in final edited form as: Trends Genet. 2010 May; 26(5): 221–230. Published online 2010 April 13. doi: 10.1016/j.tig.2010.02.001
PMCID:
PMC2865426
Abstract Full Text PDF–1.2M
Genomic gems: SINE RNAs regulate mRNA production
Steven L. Ponicsan, Jennifer F. Kugel, James A. Goodrich
Curr Opin Genet Dev. Author manuscript; available in PMC 2011 April 1.
Published in final edited form as: Curr Opin Genet Dev. 2010 April; 20(2): 149–155. Published online 2010 February 20. doi: 10.1016/j.gde.2010.01.004
PMCID:
PMC2859989
Abstract Full Text PDF–957K
A mammalian reporter system for fast and quantitative detection of intracellular A-to-I RNA editing levels
Willemijn M. Gommans, Jill McCane, Gregory S. Nacarelli, Stefan Maas
Anal Biochem. Author manuscript; available in PMC 2011 April 15.
Published in final edited form as: Anal Biochem. 2010 April 15; 399(2): 230–236. Published online 2010 January 4. doi: 10.1016/j.ab.2009.12.037
PMCID:
PMC2836118
Abstract Full Text PDF–1.0M Supplementary Material
Functions and Regulation of RNA Editing by ADAR Deaminases
Kazuko Nishikura
Annu Rev Biochem. Author manuscript; available in PMC 2010 October 12.
Published in final edited form as: Annu Rev Biochem. 2010; 79: 321–349. doi: 10.1146/annurev-biochem-060208-105251
PMCID:
PMC2953425
Abstract Full Text PDF–2.0M
Evidence for large diversity in the human transcriptome created by Alu RNA editing
Michal Barak, Erez Y. Levanon, Eli Eisenberg, Nurit Paz, Gideon Rechavi, George M. Church, Ramit Mehr
Nucleic Acids Res. 2009 November; 37(20): 6905–6915. Published online 2009 November. doi: 10.1093/nar/gkp729
PMCID:
PMC2777429
Abstract Full Text PDF–3.0M Supplementary Material
RNA editing: a driving force for adaptive evolution?
Willemijn M. Gommans, Sean P. Mullen, Stefan Maas
Bioessays. Author manuscript; available in PMC 2010 February 26.
Published in final edited form as: Bioessays. 2009 October; 31(10): 1137–1145. doi: 10.1002/bies.200900045
PMCID:
PMC2829293
Abstract Full Text PDF–434K
Widespread cleavage of A-to-I hyperediting substrates
Sivan Osenberg, Dan Dominissini, Gideon Rechavi, Eli Eisenberg
RNA. 2009 September; 15(9): 1632–1639. doi: 10.1261/rna.1581809
PMCID:
PMC2743065
Abstract Full Text PDF–323K
Identification of a selective nuclear import signal in adenosine deaminases acting on RNA
Stefan Maas, Willemijn M. Gommans
Nucleic Acids Res. 2009 September; 37(17): 5822–5829. Published online 2009 September. doi: 10.1093/nar/gkp599
PMCID:
PMC2761270
Abstract Full Text PDF–3.0M Supplementary Material
Where Do Introns Come From?
Francesco Catania, Michael Lynch
PLoS Biol. 2008 November; 6(11): e283. Published online 2008 November 25. doi: 10.1371/journal.pbio.0060283
PMCID:
PMC2586383
Full Text PDF–455K
Epigenetic Principles and Mechanisms Underlying Nervous System Functions in Health and Disease
Mark F. Mehler
Prog Neurobiol. Author manuscript; available in PMC 2009 December 11.
Published in final edited form as: Prog Neurobiol. 2008 December 11; 86(4): 305–341. Published online 2008 October 17. doi: 10.1016/j.pneurobio.2008.10.001
PMCID:
PMC2636693
Abstract Full Text PDF–274K
Screening of human SNP database identifies recoding sites of A-to-I RNA editing
Willemijn M. Gommans, Nicholas E. Tatalias, Christina P. Sie, Dylan Dupuis, Nicholas Vendetti, Lauren Smith, Rikhi Kaushal, Stefan Maas
RNA. 2008 October; 14(10): 2074–2085. doi: 10.1261/rna.816908
PMCID:
PMC2553741
Abstract Full Text PDF–1.1M
Intronic Alus Influence Alternative Splicing
Galit Lev-Maor, Oren Ram, Eddo Kim, Noa Sela, Amir Goren, Erez Y. Levanon, Gil Ast
PLoS Genet. 2008 September; 4(9): e1000204. Published online 2008 September 26. doi: 10.1371/journal.pgen.1000204
PMCID:
PMC2533698
Abstract Full Text PDF–451K Supplementary Material
Exon creation and establishment in human genes
André Corvelo, Eduardo Eyras
Genome Biol. 2008; 9(9): R141. Published online 2008 September 23. doi: 10.1186/gb-2008-9-9-r141
PMCID:
PMC2592719
Abstract Full Text PDF–544K Supplementary Material
A-to-I RNA editing alters less-conserved residues of highly conserved coding regions: Implications for dual functions in evolution
Yun Yang, Jianning Lv, Bin Gui, Heng Yin, Xiaojie Wu, Yaozhou Zhang, Yongfeng Jin
RNA. 2008 August; 14(8): 1516–1525. doi: 10.1261/rna.1063708
PMCID:
PMC2491475
Abstract Full Text PDF–1.0M
Maintenance of transposon-free regions throughout vertebrate evolution
Cas Simons, Igor V Makunin, Michael Pheasant, John S Mattick
BMC Genomics. 2007; 8: 470. Published online 2007 December 20. doi: 10.1186/1471-2164-8-470
PMCID:
PMC2241635
Abstract Full Text PDF–427K Supplementary Material
The birth of new exons: Mechanisms and evolutionary consequences
Rotem Sorek
RNA. 2007 October; 13(10): 1603–1608. doi: 10.1261/rna.682507
PMCID:
PMC1986822
Abstract Full Text PDF–167K
Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome
Noa Sela, Britta Mersch, Nurit Gal-Mark, Galit Lev-Maor, Agnes Hotz-Wagenblatt, Gil Ast
Genome Biol. 2007; 8(6): R127. Published online 2007 June 27. doi: 10.1186/gb-2007-8-6-r127
PMCID:
PMC2394776
Abstract Full Text PDF–776K Supplementary Material
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