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qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
Jan Hellemans, Geert Mortier, Anne De Paepe, Frank Speleman, Jo Vandesompele
Genome Biol. 2007; 8(2): R19. Published online 2007 February 9. doi: 10.1186/gb-2007-8-2-r19
PMCID:
PMC1852402
Abstract Full Text PDF–984K Supplementary Material

Is Cited by the Following 166 Articles in this Archive:

A Computational Profiling of Changes in Gene Expression and Transcription Factors Induced by vFLIP K13 in Primary Effusion Lymphoma
Vasu Punj, Hittu Matta, Preet M. Chaudhary
PLoS One. 2012; 7(5): e37498. Published online 2012 May 18. doi: 10.1371/journal.pone.0037498
PMCID:
PMC3356309
Abstract Full Text PDF–1.2M Supplementary Material
Reference Genes for Real-Time PCR Quantification of MicroRNAs and Messenger RNAs in Rat Models of Hepatotoxicity
María N. Lardizábal, Ana L. Nocito, Stella M. Daniele, Leonardo A. Ornella, Javier F. Palatnik, Luis M. Veggi
PLoS One. 2012; 7(5): e36323. Published online 2012 May 1. doi: 10.1371/journal.pone.0036323
PMCID:
PMC3341372
Abstract Full Text PDF–689K Supplementary Material
Reference Gene Selection for Quantitative Real-time PCR Normalization in Quercus suber
Liliana Marum, Andreia Miguel, Cândido P. Ricardo, Célia Miguel
PLoS One. 2012; 7(4): e35113. Published online 2012 April 18. doi: 10.1371/journal.pone.0035113
PMCID:
PMC3329553
Abstract Full Text PDF–432K Supplementary Material
Validation of Reference Genes for the Relative Quantification of Gene Expression in Human Epicardial Adipose Tissue
Kanta Chechi, Yves Gelinas, Patrick Mathieu, Yves Deshaies, Denis Richard
PLoS One. 2012; 7(4): e32265. Published online 2012 April 12. doi: 10.1371/journal.pone.0032265
PMCID:
PMC3325221
Abstract Full Text PDF–495K
Selection of Suitable Reference Genes for RT-qPCR Analyses in Cyanobacteria
Filipe Pinto, Catarina C. Pacheco, Daniela Ferreira, Pedro Moradas-Ferreira, Paula Tamagnini
PLoS One. 2012; 7(4): e34983. Published online 2012 April 4. doi: 10.1371/journal.pone.0034983
PMCID:
PMC3319621
Abstract Full Text PDF–228K Supplementary Material
Regulation of miRNA 219 and miRNA Clusters 338 and 17-92 in Oligodendrocytes
Omar de Faria Jr., Qiao-Ling Cui, Jenea M. Bin, Sarah-Jane Bull, Timothy E. Kennedy, Amit Bar-Or, Jack P. Antel, David R. Colman, Ajit S. Dhaunchak
Front Genet. 2012; 3: 46. Published online 2012 March 28. doi: 10.3389/fgene.2012.00046
PMCID:
PMC3314186
Abstract Full Text PDF–2.1M
Hyccin, the Molecule Mutated in the Leukodystrophy Hypomyelination and Congenital Cataract (HCC), Is a Neuronal Protein
Elisabetta Gazzerro, Simona Baldassari, Caterina Giacomini, Veronica Musante, Floriana Fruscione, Veronica La Padula, Roberta Biancheri, Sonia Scarfì, Valeria Prada, Federica Sotgia, Ian D. Duncan, Federico Zara, Hauke B. Werner, Michael P. Lisanti, Lucilla Nobbio, Anna Corradi, Carlo Minetti
PLoS One. 2012; 7(3): e32180. Published online 2012 March 26. doi: 10.1371/journal.pone.0032180
PMCID:
PMC3312879
Abstract Full Text PDF–1.6M Supplementary Material
Mutations in the Mitochondrial Methionyl-tRNA Synthetase Cause a Neurodegenerative Phenotype in Flies and a Recessive Ataxia (ARSAL) in Humans
Vafa Bayat, Isabelle Thiffault, Manish Jaiswal, Martine Tétreault, Taraka Donti, Florin Sasarman, Geneviève Bernard, Julie Demers-Lamarche, Marie-Josée Dicaire, Jean Mathieu, Michel Vanasse, Jean-Pierre Bouchard, Marie-France Rioux, Charles M. Lourenco, Zhihong Li, Claire Haueter, Eric A. Shoubridge, Brett H. Graham, Bernard Brais, Hugo J. Bellen
PLoS Biol. 2012 March; 10(3): e1001288. Published online 2012 March 20. doi: 10.1371/journal.pbio.1001288
PMCID:
PMC3308940
Abstract Full Text PDF–1.3M Supplementary Material
A Splice Site Variant in the Bovine RNF11 Gene Compromises Growth and Regulation of the Inflammatory Response
Arnaud Sartelet, Tom Druet, Charles Michaux, Corinne Fasquelle, Sarah Géron, Nico Tamma, Zhiyan Zhang, Wouter Coppieters, Michel Georges, Carole Charlier
PLoS Genet. 2012 March; 8(3): e1002581. Published online 2012 March 15. doi: 10.1371/journal.pgen.1002581
PMCID:
PMC3305398
Abstract Full Text PDF–1.4M Supplementary Material
Regulation of cell proliferation and cell density by the inorganic phosphate transporter PiT1
Kristina Byskov, Nina Jensen, Iben Boutrup Kongsfelt, Maria Wielsøe, Lasse Ebdrup Pedersen, Christa Haldrup, Lene Pedersen
Cell Div. 2012; 7: 7. Published online 2012 March 6. doi: 10.1186/1747-1028-7-7
PMCID:
PMC3325893
Abstract Full Text PDF–1.3M
Validation of reference genes for expression analysis in the salivary gland and the intestine of Rhodnius prolixus (Hemiptera, Reduviidae) under different experimental conditions by quantitative real-time PCR
Rafaela M Paim, Marcos H Pereira, Raffaello Di Ponzio, Juliana O Rodrigues, Alessandra A Guarneri, Nelder F Gontijo, Ricardo N Araújo
BMC Res Notes. 2012; 5: 128. Published online 2012 March 6. doi: 10.1186/1756-0500-5-128
PMCID:
PMC3337225
Abstract Full Text PDF–669K Supplementary Material
Molecular Mechanisms of Drug Resistance in Natural Leishmania Populations Vary with Genetic Background
Saskia Decuypere, Manu Vanaerschot, Kirstyn Brunker, Hideo Imamura, Sylke Müller, Basudha Khanal, Suman Rijal, Jean-Claude Dujardin, Graham H. Coombs
PLoS Negl Trop Dis. 2012 February; 6(2): e1514. Published online 2012 February 28. doi: 10.1371/journal.pntd.0001514
PMCID:
PMC3289598
Abstract Full Text PDF–2.2M Supplementary Material
Global Gene Expression and Systems Biology Analysis of Bovine Monocyte-Derived Macrophages in Response to In Vitro Challenge with Mycobacterium bovis
David A. Magee, Maria Taraktsoglou, Kate E. Killick, Nicolas C. Nalpas, John A. Browne, Stephen D. E. Park, Kevin M. Conlon, David J. Lynn, Karsten Hokamp, Stephen V. Gordon, Eamonn Gormley, David E. MacHugh
PLoS One. 2012; 7(2): e32034. Published online 2012 February 22. doi: 10.1371/journal.pone.0032034
PMCID:
PMC3284544
Abstract Full Text PDF–800K Supplementary Material
The Max b-HLH-LZ Can Transduce into Cells and Inhibit c-Myc Transcriptional Activities
Martin Montagne, Nicolas Beaudoin, David Fortin, Christine L. Lavoie, Roscoe Klinck, Pierre Lavigne
PLoS One. 2012; 7(2): e32172. Published online 2012 February 22. doi: 10.1371/journal.pone.0032172
PMCID:
PMC3284561
Abstract Full Text PDF–794K
Evaluation of suitable reference genes for gene expression studies in porcine alveolar macrophages in response to LPS and LTA
Mehmet Ulas Cinar, Mohammad Ariful Islam, Muhammad Jasim Uddin, Ernst Tholen, Dawit Tesfaye, Christian Looft, Karl Schellander
BMC Res Notes. 2012; 5: 107. Published online 2012 February 18. doi: 10.1186/1756-0500-5-107
PMCID:
PMC3306271
Abstract Full Text PDF–1.6M Supplementary Material
Reference Genes for Accurate Transcript Normalization in Citrus Genotypes under Different Experimental Conditions
Valéria Mafra, Karen S. Kubo, Marcio Alves-Ferreira, Marcelo Ribeiro-Alves, Rodrigo M. Stuart, Leonardo P. Boava, Carolina M. Rodrigues, Marcos A. Machado
PLoS One. 2012; 7(2): e31263. Published online 2012 February 9. doi: 10.1371/journal.pone.0031263
PMCID:
PMC3276578
Abstract Full Text PDF–696K Supplementary Material
Identification of differentially expressed genes in SHSY5Y cells exposed to okadaic acid by suppression subtractive hybridization
Vanessa Valdiglesias, Juan Fernández-Tajes, Eduardo Pásaro, Josefina Méndez, Blanca Laffon
BMC Genomics. 2012; 13: 46. Published online 2012 January 27. doi: 10.1186/1471-2164-13-46
PMCID:
PMC3296583
Abstract Full Text PDF–355K Supplementary Material
Missense mutation outside the forkhead domain of FOXL2 causes a severe form of BPES type II
Alireza Haghighi, Hannah Verdin, Hamidreza Haghighi-Kakhki, Niloofar Piri, Nasrollah Saleh Gohari, Elfride De Baere
Mol Vis. 2012; 18: 211–218. Published online 2012 January 26.
PMCID:
PMC3272052
Abstract Full Text PDF–3.0M
The Duration of Nicotine Withdrawal-Associated Deficits in Contextual Fear Conditioning Parallels Changes in Hippocampal High Affinity Nicotinic Acetylcholine Receptor Upregulation
Thomas J. Gould, George S. Portugal, Jessica M. André, Matthew P. Tadman, Michael J. Marks, Justin W. Kenney, Emre Yildirim, Michael Adoff
Neuropharmacology. Author manuscript; available in PMC 2013 April 1.
Published in final edited form as: Neuropharmacology. 2012 April; 62(5-6): 2118–2125. Published online 2012 January 21. doi: 10.1016/j.neuropharm.2012.01.003
PMCID:
PMC3278577
Free in PMC on 2013/04/01
Capacities of Migrating CD1b+ Lymph Dendritic Cells to Present Salmonella Antigens to Naive T Cells
Michel Olivier, Benjamin Foret, Yves Le Vern, Laurence A. Guilloteau
PLoS One. 2012; 7(1): e30430. Published online 2012 January 18. doi: 10.1371/journal.pone.0030430
PMCID:
PMC3261196
Abstract Full Text PDF–785K
Type 1 Diabetes Increases the Expression of Proinflammatory Cytokines and Adhesion Molecules in the Artery Wall of Candidate Patients for Kidney Transplantation
Javier Triñanes, Eduardo Salido, Julián Fernández, Margarita Rufino, José Manuel González-Posada, Armando Torres, Domingo Hernández
Diabetes Care. 2012 February; 35(2): 427–433. Published online 2012 January 16. doi: 10.2337/dc11-1665
PMCID:
PMC3263898
Free in PMC on 2013/02/01
Accurate RT-qPCR gene expression analysis on cell culture lysates
Gert Van Peer, Pieter Mestdagh, Jo Vandesompele
Sci Rep. 2012; 2: 222. Published online 2012 January 13. doi: 10.1038/srep00222
PMCID:
PMC3257325
Abstract Full Text PDF–968K Supplementary Material
Correction of RT–qPCR data for genomic DNA-derived signals with ValidPrime
Henrik Laurell, Jason S. Iacovoni, Anne Abot, David Svec, Jean-José Maoret, Jean-François Arnal, Mikael Kubista
Nucleic Acids Res. 2012 April; 40(7): e51. Published online 2012 January 6. doi: 10.1093/nar/gkr1259
PMCID:
PMC3326333
Abstract Full Text PDF–586K Supplementary Material
Quality Assurance of RNA Expression Profiling in Clinical Laboratories
Weihua Tang, Zhiyuan Hu, Hind Muallem, Margaret L. Gulley
J Mol Diagn. 2012 January; 14(1): 1–11. doi: 10.1016/j.jmoldx.2011.09.003
PMCID:
PMC3338342
Free in PMC on 2013/01/01
Genome-wide transcriptional profiling of peripheral blood leukocytes from cattle infected with Mycobacterium bovis reveals suppression of host immune genes
Kate E Killick, John A Browne, Stephen DE Park, David A Magee, Irene Martin, Kieran G Meade, Stephen V Gordon, Eamonn Gormley, Cliona O'Farrelly, Karsten Hokamp, David E MacHugh
BMC Genomics. 2011; 12: 611. Published online 2011 December 19. doi: 10.1186/1471-2164-12-611
PMCID:
PMC3292584
Abstract Full Text PDF–2.1M Supplementary Material
Ecological transcriptomics of lake-type and riverine sockeye salmon (Oncorhynchus nerka)
Scott A Pavey, Ben JG Sutherland, Jong Leong, Adrienne Robb, Kris von Schalburg, Troy R Hamon, Ben F Koop, Jennifer L Nielsen
BMC Ecol. 2011; 11: 31. Published online 2011 December 2. doi: 10.1186/1472-6785-11-31
PMCID:
PMC3295673
Abstract Full Text PDF–832K Supplementary Material
In Vitro Fermentation of Sugar Beet Arabino-Oligosaccharides by Fecal Microbiota Obtained from Patients with Ulcerative Colitis To Selectively Stimulate the Growth of Bifidobacterium spp. and Lactobacillus spp.
Louise Kristine Vigsnæs, Jesper Holck, Anne S. Meyer, Tine Rask Licht
Appl Environ Microbiol. 2011 December; 77(23): 8336–8344. doi: 10.1128/AEM.05895-11
PMCID:
PMC3233050
Free in PMC on 2012/06/01
SND2, a NAC transcription factor gene, regulates genes involved in secondary cell wall development in Arabidopsis fibres and increases fibre cell area in Eucalyptus
Steven G Hussey, Eshchar Mizrachi, Antanas V Spokevicius, Gerd Bossinger, Dave K Berger, Alexander A Myburg
BMC Plant Biol. 2011; 11: 173. Published online 2011 December 1. doi: 10.1186/1471-2229-11-173
PMCID:
PMC3289092
Abstract Full Text PDF–1.1M Supplementary Material
Identification of superior reference genes for data normalisation of expression studies via quantitative PCR in hybrid roses (Rosa hybrida)
Maik Klie, Thomas Debener
BMC Res Notes. 2011; 4: 518. Published online 2011 November 28. doi: 10.1186/1756-0500-4-518
PMCID:
PMC3248381
Abstract Full Text PDF–303K Supplementary Material
GLUT10 is required for the development of the cardiovascular system and the notochord and connects mitochondrial function to TGFβ signaling
Andy Willaert, Sandeep Khatri, Bert L. Callewaert, Paul J. Coucke, Seth D. Crosby, Joseph G. H. Lee, Elaine C. Davis, Sruti Shiva, Michael Tsang, Anne De Paepe, Zsolt Urban
Hum Mol Genet. 2012 March 15; 21(6): 1248–1259. Published online 2011 November 24. doi: 10.1093/hmg/ddr555
PMCID:
PMC3284116
Free in PMC on 2013/03/15
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