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qBase relative quantification framework and software for management and automated analysis of real-time quantitative PCR data
Jan Hellemans, Geert Mortier, Anne De Paepe, Frank Speleman, Jo Vandesompele
Genome Biol. 2007; 8(2): R19. Published online 2007 February 9. doi: 10.1186/gb-2007-8-2-r19
PMCID:
PMC1852402
Abstract Full Text PDF–984K Supplementary Material
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 Is Cited by the Following 122 Articles in this Archive:
Missense mutation outside the forkhead domain of FOXL2 causes a severe form of BPES type II
Alireza Haghighi, Hannah Verdin, Hamidreza Haghighi-Kakhki, Niloofar Piri, Nasrollah Saleh Gohari, Elfride De Baere
Mol Vis. 2012; 18: 211–218. Published online 2012 January 26.
PMCID:
PMC3272052
Abstract Full Text PDF–3.0M
Capacities of Migrating CD1b+ Lymph Dendritic Cells to Present Salmonella Antigens to Naive T Cells
Michel Olivier, Benjamin Foret, Yves Le Vern, Laurence A. Guilloteau
PLoS One. 2012; 7(1): e30430. Published online 2012 January 18. doi: 10.1371/journal.pone.0030430
PMCID:
PMC3261196
Abstract Full Text PDF–785K
Accurate RT-qPCR gene expression analysis on cell culture lysates
Gert Van Peer, Pieter Mestdagh, Jo Vandesompele
Sci Rep. 2012; 2: 222. Published online 2012 January 13. doi: 10.1038/srep00222
PMCID:
PMC3257325
Full Text PDF–968K Supplementary Material
Identification of superior reference genes for data normalisation of expression studies via quantitative PCR in hybrid roses (Rosa hybrida)
Maik Klie, Thomas Debener
BMC Res Notes. 2011; 4: 518. Published online 2011 November 28. doi: 10.1186/1756-0500-4-518
PMCID:
PMC3248381
Abstract Full Text PDF–303K Supplementary Material
Evaluation of Internal Reference Genes for Quantitative Expression Analysis by Real-Time PCR in Ovine Whole Blood
Simone Peletto, Simone Bertuzzi, Chiara Campanella, Paola Modesto, Maria Grazia Maniaci, Claudio Bellino, Dario Ariello, Antonio Quasso, Maria Caramelli, Pier Luigi Acutis
Int J Mol Sci. 2011; 12(11): 7732–7747. Published online 2011 November 9. doi: 10.3390/ijms12117732
PMCID:
PMC3233434
Abstract Full Text PDF–416K
Development of Gene Expression Markers of Acute Heat-Light Stress in Reef-Building Corals of the Genus Porites
Carly D. Kenkel, Galina Aglyamova, Ada Alamaru, Ranjeet Bhagooli, Roxana Capper, Ross Cunning, Amanda deVillers, Joshua A. Haslun, Laetitia Hédouin, Shashank Keshavmurthy, Kristin A. Kuehl, Huda Mahmoud, Elizabeth S. McGinty, Phanor H. Montoya-Maya, Caroline V. Palmer, Raffaella Pantile, Juan A. Sánchez, Tom Schils, Rachel N. Silverstein, Logan B. Squiers, Pei-Ciao Tang, Tamar L. Goulet, Mikhail V. Matz
PLoS One. 2011; 6(10): e26914. Published online 2011 October 26. doi: 10.1371/journal.pone.0026914
PMCID:
PMC3202587
Abstract Full Text PDF–430K Supplementary Material
Evaluation of glyceraldehyde-3-phosphate, prolylpeptidyl isomerase A, and a set of stably expressed genes as reference mRNAs in urate crystal inflammation
Cristina Della Beffa, Frank Klawonn, Joseph P Menetski, H Ralph Schumacher, Jr, Frank Pessler
BMC Res Notes. 2011; 4: 443. Published online 2011 October 25. doi: 10.1186/1756-0500-4-443
PMCID:
PMC3213070
Abstract Full Text PDF–489K
Age-related changes in relative expression stability of commonly used housekeeping genes in selected porcine tissues
Muhammad Jasim Uddin, Mehmet Ulas Cinar, Dawit Tesfaye, Christian Looft, Ernst Tholen, Karl Schellander
BMC Res Notes. 2011; 4: 441. Published online 2011 October 24. doi: 10.1186/1756-0500-4-441
PMCID:
PMC3219825
Abstract Full Text PDF–2.4M Supplementary Material
Selection of reference genes for qPCR in hairy root cultures of peanut
Jose Condori, Cesar Nopo-Olazabal, Giuliana Medrano, Fabricio Medina-Bolivar
BMC Res Notes. 2011; 4: 392. Published online 2011 October 10. doi: 10.1186/1756-0500-4-392
PMCID:
PMC3199266
Abstract Full Text PDF–943K Supplementary Material
Reference genes for gene expression studies in wheat flag leaves grown under different farming conditions
Gabriela N Tenea, Adrian Peres Bota, Fernando Cordeiro Raposo, Alain Maquet
BMC Res Notes. 2011; 4: 373. Published online 2011 September 27. doi: 10.1186/1756-0500-4-373
PMCID:
PMC3193821
Abstract Full Text PDF–417K Supplementary Material
Transgenerational Epigenetic Instability Is a Source of Novel Methylation Variants
Robert J. Schmitz, Matthew D. Schultz, Mathew G. Lewsey, Ronan C. O’Malley, Mark A. Urich, Ondrej Libiger, Nicholas J. Schork, Joseph R. Ecker
Science. Author manuscript; available in PMC 2012 January 21.
Published in final edited form as: Science. 2011 October 21; 334(6054): 369–373. Published online 2011 September 15. doi: 10.1126/science.1212959
PMCID:
PMC3210014
Abstract Full Text PDF–866K Supplementary Material
GETPrime: a gene- or transcript-specific primer database for quantitative real-time PCR
Carine Gubelmann, Alexandre Gattiker, Andreas Massouras, Korneel Hens, Fabrice David, Frederik Decouttere, Jacques Rougemont, Bart Deplancke
Database (Oxford) 2011; 2011: bar040. Published online 2011 September 14. doi: 10.1093/database/bar040
PMCID:
PMC3173022
Abstract Full Text PDF–1.3M
Repertoire of Porcine MicroRNAs in Adult Ovary and Testis by Deep Sequencing
Mingzhou Li, Yingkai Liu, Tao Wang, Jiuqiang Guan, Zonggang Luo, Haosi Chen, Xin Wang, Lei Chen, Jideng Ma, Zhiping Mu, An-an Jiang, Li Zhu, Qiulei Lang, Xiaochuan Zhou, Jinyong Wang, Wenxian Zeng, Ning Li, Kui Li, Xiaolian Gao, Xuewei Li
Int J Biol Sci. 2011; 7(7): 1045–1055. Published online 2011 September 1.
PMCID:
PMC3174389
Abstract Full Text PDF–1.0M Supplementary Material
Differential transcriptomic profiles effected by oil palm phenolics indicate novel health outcomes
Soon-Sen Leow, Shamala Devi Sekaran, Kalyana Sundram, YewAi Tan, Ravigadevi Sambanthamurthi
BMC Genomics. 2011; 12: 432. Published online 2011 August 25. doi: 10.1186/1471-2164-12-432
PMCID:
PMC3175228
Abstract Full Text PDF–2.4M Supplementary Material
Dynamics of Cryptococcus neoformans-Macrophage Interactions Reveal that Fungal Background Influences Outcome during Cryptococcal Meningoencephalitis in Humans
Alexandre Alanio, Marie Desnos-Ollivier, Françoise Dromer
mBio. 2011 Jul-Aug; 2(4): e00158-11. Published online 2011 August 9. doi: 10.1128/mBio.00158-11
PMCID:
PMC3149853
Abstract Full Text PDF–2.0M Supplementary Material
Antimonial Resistance in Leishmania donovani Is Associated with Increased In Vivo Parasite Burden
Manu Vanaerschot, Simonne De Doncker, Suman Rijal, Louis Maes, Jean-Claude Dujardin, Saskia Decuypere
PLoS One. 2011; 6(8): e23120. Published online 2011 August 1. doi: 10.1371/journal.pone.0023120
PMCID:
PMC3148249
Abstract Full Text PDF–210K Supplementary Material
Lack of Protein 4.1G Causes Altered Expression and Localization of the Cell Adhesion Molecule Nectin-Like 4 in Testis and Can Cause Male Infertility
Shaomin Yang, Haibo Weng, Lixiang Chen, Xinhua Guo, Marilyn Parra, John Conboy, Gargi Debnath, Amy J. Lambert, Luanne L. Peters, Anthony J. Baines, Narla Mohandas, Xiuli An
Mol Cell Biol. 2011 June; 31(11): 2276–2286. doi: 10.1128/MCB.01105-10
PMCID:
PMC3133242
Abstract Full Text PDF–4.5M
A combination of transcriptome and methylation analyses reveals embryologically-relevant candidate genes in MRKH patients
Katharina Rall, Gianmaria Barresi, Michael Walter, Sven Poths, Karina Haebig, Karin Schaeferhoff, Birgitt Schoenfisch, Olaf Riess, Diethelm Wallwiener, Michael Bonin, Sara Brucker
Orphanet J Rare Dis. 2011; 6: 32. Published online 2011 May 28. doi: 10.1186/1750-1172-6-32
PMCID:
PMC3123171
Abstract Full Text PDF–1.9M
CNVassoc: Association analysis of CNV data using R
Isaac Subirana, Ramon Diaz-Uriarte, Gavin Lucas, Juan R Gonzalez
BMC Med Genomics. 2011; 4: 47. Published online 2011 May 24. doi: 10.1186/1755-8794-4-47
PMCID:
PMC3121578
Abstract Full Text PDF–317K Supplementary Material
Comparative Gene Expression Analysis throughout the Life Cycle of Leishmania braziliensis: Diversity of Expression Profiles among Clinical Isolates
Vanessa Adaui, Denis Castillo, Mirko Zimic, Andres Gutierrez, Saskia Decuypere, Manu Vanaerschot, Simonne De Doncker, Kathy Schnorbusch, Ilse Maes, Gert Van der Auwera, Louis Maes, Alejandro Llanos-Cuentas, Jorge Arevalo, Jean-Claude Dujardin
PLoS Negl Trop Dis. 2011 May; 5(5): e1021. Published online 2011 May 10. doi: 10.1371/journal.pntd.0001021
PMCID:
PMC3091834
Abstract Full Text PDF–545K
Overestimation of the Abundance of Sulfate-Reducing Bacteria in Human Feces by Quantitative PCR Targeting the Desulfovibrio 16S rRNA Gene
C. T. Christophersen, M. Morrison, M. A. Conlon
Appl Environ Microbiol. 2011 May; 77(10): 3544–3546. doi: 10.1128/AEM.02851-10
PMCID:
PMC3126453
Abstract Full Text PDF–108K
Expression of organic anion-transporting polypeptides 1B3, 1B1, and 1A2 in human pancreatic cancer reveals a new class of potential therapeutic targets
Valentinos Kounnis, Elli Ioachim, Martin Svoboda, Andreas Tzakos, Ioannis Sainis, Theresia Thalhammer, Georg Steiner, Evangelos Briasoulis
Onco Targets Ther. 2011; 4: 27–32. Published online 2011 April 8. doi: 10.2147/OTT.S16706
PMCID:
PMC3084305
Abstract Full Text PDF–2.7M
A Large Expansion of the HSFY Gene Family in Cattle Shows Dispersion across Yq and Testis-Specific Expression
Christine K. Hamilton, Tamas Revay, Robin Domander, Laura A. Favetta, W. Allan King
PLoS One. 2011; 6(3): e17790. Published online 2011 March 7. doi: 10.1371/journal.pone.0017790
PMCID:
PMC3049798
Abstract Full Text PDF–562K
The liver-specific microRNA miR-122 controls systemic iron homeostasis in mice
Mirco Castoldi, Maja Vujic Spasic, Sandro Altamura, Joacim Elmén, Morten Lindow, Judit Kiss, Jens Stolte, Richard Sparla, Lorenza A. D’Alessandro, Ursula Klingmüller, Robert E. Fleming, Thomas Longerich, Hermann J. Gröne, Vladimir Benes, Sakari Kauppinen, Matthias W. Hentze, Martina U. Muckenthaler
J Clin Invest. 2011 April 1; 121(4): 1386–1396. Published online 2011 March 1. doi: 10.1172/JCI44883
PMCID:
PMC3069782
Abstract Full Text PDF–1.2M Supplementary Material
Neurotensin Receptor 1 Is Expressed in Gastrointestinal Stromal Tumors but Not in Interstitial Cells of Cajal
Petra Gromova, Brian P. Rubin, An Thys, Christophe Erneux, Jean-Marie Vanderwinden
PLoS One. 2011; 6(2): e14710. Published online 2011 February 18. doi: 10.1371/journal.pone.0014710
PMCID:
PMC3041753
Abstract Full Text PDF–3.4M Supplementary Material
Assessment and validation of a suite of reverse transcription-quantitative PCR reference genes for analyses of density-dependent behavioural plasticity in the Australian plague locust
Marie-Pierre Chapuis, Donya Tohidi-Esfahani, Tim Dodgson, Laurence Blondin, Fleur Ponton, Darron Cullen, Stephen J Simpson, Gregory A Sword
BMC Mol Biol. 2011; 12: 7. Published online 2011 February 16. doi: 10.1186/1471-2199-12-7
PMCID:
PMC3048552
Abstract Full Text PDF–343K Supplementary Material
Oxidative DNA Damage Bypass in Arabidopsis thaliana Requires DNA Polymerase λ and Proliferating Cell Nuclear Antigen 2
Alessandra Amoroso, Lorenzo Concia, Caterina Maggio, Cécile Raynaud, Catherine Bergounioux, Emmanuele Crespan, Rino Cella, Giovanni Maga
Plant Cell. 2011 February; 23(2): 806–822. Published online 2011 February 15. doi: 10.1105/tpc.110.081455
PMCID:
PMC3077771
Abstract Full Text PDF–1.1M
Metabolic Engineering in Nicotiana benthamiana Reveals Key Enzyme Functions in Arabidopsis Indole Glucosinolate Modification
Marina Pfalz, Michael Dalgaard Mikkelsen, Paweł Bednarek, Carl Erik Olsen, Barbara Ann Halkier, Juergen Kroymann
Plant Cell. 2011 February; 23(2): 716–729. Published online 2011 February 11. doi: 10.1105/tpc.110.081711
PMCID:
PMC3077789
Abstract Full Text PDF–685K
Measurable impact of RNA quality on gene expression results from quantitative PCR
Joëlle Vermeulen, Katleen De Preter, Steve Lefever, Justine Nuytens, Fanny De Vloed, Stefaan Derveaux, Jan Hellemans, Frank Speleman, Jo Vandesompele
Nucleic Acids Res. 2011 May; 39(9): e63. Published online 2011 February 11. doi: 10.1093/nar/gkr065
PMCID:
PMC3089491
Abstract Full Text PDF–5.5M Supplementary Material
G-Quadruplex-Binding Benzo[a]phenoxazines Down-Regulate c-KIT Expression in Human Gastric Carcinoma Cells
Keith I. E. McLuckie, Zoë A. E. Waller, Deborah A. Sanders, David Alves, Raphaël Rodriguez, Jyotirmayee Dash, Grahame J. McKenzie, Ashok R. Venkitaraman, Shankar Balasubramanian
J Am Chem Soc. Author manuscript; available in PMC 2011 July 4.
Published in final edited form as: J Am Chem Soc. 2011 March 2; 133(8): 2658–2663. Published online 2011 February 4. doi: 10.1021/ja109474c
PMCID:
PMC3128987
Abstract Full Text PDF–754K Supplementary Material
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