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The power of phylogenetic approaches to detect horizontally transferred genes
Maria S Poptsova, J Peter Gogarten
BMC Evol Biol. 2007; 7: 45. Published online 2007 March 21. doi: 10.1186/1471-2148-7-45
PMCID:
PMC1847511
Abstract Full Text PDF–2.6M Supplementary Material

Is Cited by the Following 12 Articles in this Archive:

Abundance and distribution of the highly iterated palindrome 1 (HIP1) among prokaryotes
Luis Delaye, Andrés Moya
Mob Genet Elements. 2011 Sep-Oct; 1(3): 159–168. Published online 2011 September 1. doi: 10.4161/mge.1.3.18300
PMCID:
PMC3271550
Abstract Full Text PDF–735K Supplementary Material
Universally Distributed Single-Copy Genes Indicate a Constant Rate of Horizontal Transfer
Christopher J. Creevey, Tobias Doerks, David A. Fitzpatrick, Jeroen Raes, Peer Bork
PLoS One. 2011; 6(8): e22099. Published online 2011 August 5. doi: 10.1371/journal.pone.0022099
PMCID:
PMC3151239
Abstract Full Text PDF–947K Supplementary Material
Blueprint for a minimal photoautotrophic cell: conserved and variable genes in Synechococcus elongatus PCC 7942
Luis Delaye, Carmen M González-Domenech, María P Garcillán-Barcia, Juli Peretó, Fernando de la Cruz, Andrés Moya
BMC Genomics. 2011; 12: 25. Published online 2011 January 12. doi: 10.1186/1471-2164-12-25
PMCID:
PMC3025956
Abstract Full Text PDF–1.9M Supplementary Material
Phylogenomic Analysis of Marine Roseobacters
Kai Tang, Hongzhan Huang, Nianzhi Jiao, Cathy H. Wu
PLoS One. 2010; 5(7): e11604. Published online 2010 July 15. doi: 10.1371/journal.pone.0011604
PMCID:
PMC2904699
Abstract Full Text PDF–1.4M Supplementary Material
A Benchmark of Parametric Methods for Horizontal Transfers Detection
Jennifer Becq, Cécile Churlaud, Patrick Deschavanne
PLoS One. 2010; 5(4): e9989. Published online 2010 April 1. doi: 10.1371/journal.pone.0009989
PMCID:
PMC2848678
Abstract Full Text PDF–307K Supplementary Material
Phylogeny of Gammaproteobacteria
Kelly P. Williams, Joseph J. Gillespie, Bruno W. S. Sobral, Eric K. Nordberg, Eric E. Snyder, Joshua M. Shallom, Allan W. Dickerman
J Bacteriol. 2010 May; 192(9): 2305–2314. Published online 2010 March 5. doi: 10.1128/JB.01480-09
PMCID:
PMC2863478
Abstract Full Text PDF–1.9M Supplementary Material
Lateral genetic transfer: open issues
Mark A. Ragan, Robert G. Beiko
Philos Trans R Soc Lond B Biol Sci. 2009 August 12; 364(1527): 2241–2251. doi: 10.1098/rstb.2009.0031
PMCID:
PMC2872999
Abstract Full Text PDF–298K
Hidden Chromosome Symmetry: In Silico Transformation Reveals Symmetry in 2D DNA Walk Trajectories of 671 Chromosomes
Maria S. Poptsova, Sergei A. Larionov, Eugeny V. Ryadchenko, Sergei D. Rybalko, Ilya A. Zakharov, Alexander Loskutov
PLoS One. 2009; 4(7): e6396. Published online 2009 July 28. doi: 10.1371/journal.pone.0006396
PMCID:
PMC2712679
Abstract Full Text PDF–800K Supplementary Material
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans
Mircea Podar, Iain Anderson, Kira S Makarova, James G Elkins, Natalia Ivanova, Mark A Wall, Athanasios Lykidis, Kostantinos Mavromatis, Hui Sun, Matthew E Hudson, Wenqiong Chen, Cosmin Deciu, Don Hutchison, Jonathan R Eads, Abraham Anderson, Fillipe Fernandes, Ernest Szeto, Alla Lapidus, Nikos C Kyrpides, Milton H Saier, Jr, Paul M Richardson, Reinhard Rachel, Harald Huber, Jonathan A Eisen, Eugene V Koonin, Martin Keller, Karl O Stetter
Genome Biol. 2008; 9(11): R158. Published online 2008 November 10. doi: 10.1186/gb-2008-9-11-r158
PMCID:
PMC2614490
Abstract Full Text PDF–905K Supplementary Material
Chlamydial genes shed light on the evolution of photoautotrophic eukaryotes
Burkhard Becker, Kerstin Hoef-Emden, Michael Melkonian
BMC Evol Biol. 2008; 8: 203. Published online 2008 July 15. doi: 10.1186/1471-2148-8-203
PMCID:
PMC2490706
Abstract Full Text PDF–590K Supplementary Material
Evolutionary history of bacteriophages with double-stranded DNA genomes
Galina Glazko, Vladimir Makarenkov, Jing Liu, Arcady Mushegian
Biol Direct. 2007; 2: 36. Published online 2007 December 6. doi: 10.1186/1745-6150-2-36
PMCID:
PMC2222618
Abstract Full Text PDF–1.1M Supplementary Material
Data congruence, paedomorphosis and salamanders
Torsten H Struck
Front Zool. 2007; 4: 22. Published online 2007 October 31. doi: 10.1186/1742-9994-4-22
PMCID:
PMC2234405
Abstract Full Text PDF–755K Supplementary Material
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