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DiscoverySpace: an interactive data analysis application
Neil Robertson, Mehrdad Oveisi-Fordorei, Scott D Zuyderduyn, Richard J Varhol, Christopher Fjell, Marco Marra, Steven Jones, Asim Siddiqui
Genome Biol. 2007; 8(1): R6. Published online 2007 January 8. doi: 10.1186/gb-2007-8-1-r6
PMCID:
PMC1839122
Abstract Full Text PDF–1.5M
 Is Cited by the Following 16 Articles in this Archive:
hSAGEing: An Improved SAGE-Based Software for Identification of Human Tissue-Specific or Common Tumor Markers and Suppressors
Cheng-Hong Yang, Li-Yeh Chuang, Tsung-Mu Shih, Hsueh-Wei Chang
PLoS One. 2010; 5(12): e14369. Published online 2010 December 17. doi: 10.1371/journal.pone.0014369
PMCID:
PMC3003683
Abstract Full Text PDF–2.0M Supplementary Material
LNCaP Atlas: Gene expression associated with in vivo progression to castration-recurrent prostate cancer
Tammy L Romanuik, Gang Wang, Olena Morozova, Allen Delaney, Marco A Marra, Marianne D Sadar
BMC Med Genomics. 2010; 3: 43. Published online 2010 September 24. doi: 10.1186/1755-8794-3-43
PMCID:
PMC2956710
Abstract Full Text PDF–781K Supplementary Material
Apomictic and Sexual Ovules of Boechera Display Heterochronic Global Gene Expression Patterns
Timothy F. Sharbel, Marie-Luise Voigt, José M. Corral, Giulio Galla, Jochen Kumlehn, Christian Klukas, Falk Schreiber, Heiko Vogel, Björn Rotter
Plant Cell. 2010 March; 22(3): 655–671. Published online 2010 March 19. doi: 10.1105/tpc.109.072223
PMCID:
PMC2861462
Abstract Full Text PDF–1.4M Supplementary Material
Genomic analysis distinguishes phases of early development of the mouse atrio-ventricular canal
Pavle Vrljicak, Alex C. Y. Chang, Olena Morozova, Elizabeth D. Wederell, Kyle Niessen, Marco A. Marra, Aly Karsan, Pamela A. Hoodless
Physiol Genomics. 2010 February; 40(3): 150–157. Published online 2009 December 1. doi: 10.1152/physiolgenomics.00142.2009
PMCID:
PMC2825764
Abstract Full Text
Identification of novel androgen-responsive genes by sequencing of LongSAGE libraries
Tammy L Romanuik, Gang Wang, Robert A Holt, Steven JM Jones, Marco A Marra, Marianne D Sadar
BMC Genomics. 2009; 10: 476. Published online 2009 October 15. doi: 10.1186/1471-2164-10-476
PMCID:
PMC2766392
Abstract Full Text PDF–641K Supplementary Material
Gene expression profiling via LongSAGE in a non-model plant species: a case study in seeds of Brassica napus
Christian Obermeier, Bashir Hosseini, Wolfgang Friedt, Rod Snowdon
BMC Genomics. 2009; 10: 295. Published online 2009 July 3. doi: 10.1186/1471-2164-10-295
PMCID:
PMC2719671
Abstract Full Text PDF–1.2M Supplementary Material
An Integrated Strategy to Study Muscle Development and Myofilament Structure in Caenorhabditis elegans
Barbara Meissner, Adam Warner, Kim Wong, Nicholas Dube, Adam Lorch, Sheldon J. McKay, Jaswinder Khattra, Teresa Rogalski, Aruna Somasiri, Iasha Chaudhry, Rebecca M. Fox, David M. Miller, III, David L. Baillie, Robert A. Holt, Steven J. M. Jones, Marco A. Marra, Donald G. Moerman
PLoS Genet. 2009 June; 5(6): e1000537. Published online 2009 June 26. doi: 10.1371/journal.pgen.1000537
PMCID:
PMC2694363
Abstract Full Text PDF–1.3M Supplementary Material
Molecular Phenotypes Distinguish Patients with Relatively Stable from Progressive Idiopathic Pulmonary Fibrosis (IPF)
Kathy Boon, Nathaniel W. Bailey, Jun Yang, Mark P. Steel, Steve Groshong, Dolly Kervitsky, Kevin K. Brown, Marvin I. Schwarz, David A. Schwartz
PLoS ONE. 2009; 4(4): e5134. Published online 2009 April 6. doi: 10.1371/journal.pone.0005134
PMCID:
PMC2661376
Abstract Full Text PDF–1.1M Supplementary Material
Evaluating genome-wide DNA methylation changes in mice by Methylation Specific Digital Karyotyping
Kathy Boon, John K Tomfohr, Nathaniel W Bailey, Stavros Garantziotis, Zhuowei Li, David M Brass, Shuichiro Maruoka, John W Hollingsworth, David A Schwartz
BMC Genomics. 2008; 9: 598. Published online 2008 December 11. doi: 10.1186/1471-2164-9-598
PMCID:
PMC2621211
Abstract Full Text PDF–617K Supplementary Material
Molecular Profiling Reveals Similarities and Differences Between Primitive Subsets of Hematopoietic Cells Generated In Vitro from Human Embryonic Stem Cells and In Vivo during Embryogenesis
Giorgia Salvagiotto, Yun Zhao, Maxim Vodyanik, Victor Ruotti, Ronald Stewart, Marco Marra, James Thomson, Connie Eaves, Igor Slukvin
Exp Hematol. Author manuscript; available in PMC 2009 October 1.
Published in final edited form as: Exp Hematol. 2008 October; 36(10): 1377–1389. doi: 10.1016/j.exphem.2008.06.015
PMCID:
PMC2680389
Abstract Full Text PDF–4.2M Supplementary Material
A Seriation Approach for Visualization-Driven Discovery of Co-Expression Patterns in Serial Analysis of Gene Expression (SAGE) Data
Olena Morozova, Vyacheslav Morozov, Brad G. Hoffman, Cheryl D. Helgason, Marco A. Marra
PLoS ONE. 2008; 3(9): e3205. Published online 2008 September 12. doi: 10.1371/journal.pone.0003205
PMCID:
PMC2527533
Abstract Full Text PDF–734K Supplementary Material
Expression of Groucho/TLE proteins during pancreas development
Brad G Hoffman, Bogard Zavaglia, Mike Beach, Cheryl D Helgason
BMC Dev Biol. 2008; 8: 81. Published online 2008 September 8. doi: 10.1186/1471-213X-8-81
PMCID:
PMC2551604
Abstract Full Text PDF–2.0M
Identification of a set of genes showing regionally enriched expression in the mouse brain
Cletus A D'Souza, Vikramjit Chopra, Richard Varhol, Yuan-Yun Xie, Slavita Bohacec, Yongjun Zhao, Lisa LC Lee, Mikhail Bilenky, Elodie Portales-Casamar, An He, Wyeth W Wasserman, Daniel Goldowitz, Marco A Marra, Robert A Holt, Elizabeth M Simpson, Steven JM Jones
BMC Neurosci. 2008; 9: 66. Published online 2008 July 14. doi: 10.1186/1471-2202-9-66
PMCID:
PMC2483290
Abstract Full Text PDF–364K Supplementary Material
Identification of transcripts with enriched expression in the developing and adult pancreas
Brad G Hoffman, Bogard Zavaglia, Joy Witzsche, Teresa Ruiz de Algara, Mike Beach, Pamela A Hoodless, Steven JM Jones, Marco A Marra, Cheryl D Helgason
Genome Biol. 2008; 9(6): R99. Published online 2008 June 14. doi: 10.1186/gb-2008-9-6-r99
PMCID:
PMC2481431
Abstract Full Text PDF–2.2M Supplementary Material
Using LongSAGE to Detect Biomarkers of Cervical Cancer Potentially Amenable to Optical Contrast Agent Labelling
Julie M. Kneller, Thomas Ehlen, Jasenka P. Matisic, Dianne Miller, Dirk Van Niekerk, Wan L. Lam, Marco Marra, Rebecca Richards-Kortum, Michelle Follen, Calum MacAulay, Steven J. M. Jones
Biomark Insights. 2007; 2: 447–461. Published online 2007 December 11.
PMCID:
PMC2717845
Abstract Full Text PDF–261K
A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE)
Juan Hou, Anita M Charters, Sam C Lee, Yongjun Zhao, Mona K Wu, Steven JM Jones, Marco A Marra, Pamela A Hoodless
BMC Dev Biol. 2007; 7: 92. Published online 2007 August 2. doi: 10.1186/1471-213X-7-92
PMCID:
PMC1950885
Abstract Full Text PDF–1.7M Supplementary Material
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