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Exogean: a framework for annotating protein-coding genes in eukaryotic genomic DNA
Sarah Djebali, Franck Delaplace, Hugues Roest Crollius
Genome Biol. 2006; 7(Suppl 1): S7. Published online 2006 August 7. doi: 10.1186/gb-2006-7-s1-s7
PMCID:
PMC1810556
Abstract Full Text PDF–199K
 Is Cited by the Following 4 Articles in this Archive:
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data
Ernesto Picardi, Flavio Mignone, Graziano Pesole
BMC Bioinformatics. 2009; 10(Suppl 6): S10. Published online 2009 June 16. doi: 10.1186/1471-2105-10-S6-S10
PMCID:
PMC2697633
Abstract Full Text PDF–336K
Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments
Brian J Haas, Steven L Salzberg, Wei Zhu, Mihaela Pertea, Jonathan E Allen, Joshua Orvis, Owen White, C Robin Buell, Jennifer R Wortman
Genome Biol. 2008; 9(1): R7. Published online 2008 January 11. doi: 10.1186/gb-2008-9-1-r7
PMCID:
PMC2395244
Abstract Full Text PDF–722K Supplementary Material
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction
Samuel S Gross, Chuong B Do, Marina Sirota, Serafim Batzoglou
Genome Biol. 2007; 8(12): R269. Published online 2007 December 20. doi: 10.1186/gb-2007-8-12-r269
PMCID:
PMC2246271
Abstract Full Text PDF–1.9M
EGASP: the human ENCODE Genome Annotation Assessment Project
Roderic Guigó, Paul Flicek, Josep F Abril, Alexandre Reymond, Julien Lagarde, France Denoeud, Stylianos Antonarakis, Michael Ashburner, Vladimir B Bajic, Ewan Birney, Robert Castelo, Eduardo Eyras, Catherine Ucla, Thomas R Gingeras, Jennifer Harrow, Tim Hubbard, Suzanna E Lewis, Martin G Reese
Genome Biol. 2006; 7(Suppl 1): S2. Published online 2006 August 7. doi: 10.1186/gb-2006-7-s1-s2
PMCID:
PMC1810551
Abstract Full Text PDF–2.1M
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