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Pairagon+N-SCAN_EST: a model-based gene annotation pipeline
Manimozhiyan Arumugam, Chaochun Wei, Randall H Brown, Michael R Brent
Genome Biol. 2006; 7(Suppl 1): S5. Published online 2006 August 7. doi: 10.1186/gb-2006-7-s1-s5
PMCID:
PMC1810554
Abstract Full Text PDF–286K

Is Cited by the Following 6 Articles in this Archive:

Hidden Markov Models and their Applications in Biological Sequence Analysis
Byung-Jun Yoon
Curr Genomics. 2009 September; 10(6): 402–415. doi: 10.2174/138920209789177575
PMCID:
PMC2766791
Abstract Full Text PDF–443K
EasyCluster: a fast and efficient gene-oriented clustering tool for large-scale transcriptome data
Ernesto Picardi, Flavio Mignone, Graziano Pesole
BMC Bioinformatics. 2009; 10(Suppl 6): S10. Published online 2009 June 16. doi: 10.1186/1471-2105-10-S6-S10
PMCID:
PMC2697633
Abstract Full Text PDF–336K
Pairagon: a highly accurate, HMM-based cDNA-to-genome aligner
David V. Lu, Randall H. Brown, Manimozhiyan Arumugam, Michael R. Brent
Bioinformatics. 2009 July 1; 25(13): 1587–1593. Published online 2009 May 4. doi: 10.1093/bioinformatics/btp273
PMCID:
PMC2732315
Abstract Full Text PDF–408K Supplementary Material
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novo gene prediction
Samuel S Gross, Chuong B Do, Marina Sirota, Serafim Batzoglou
Genome Biol. 2007; 8(12): R269. Published online 2007 December 20. doi: 10.1186/gb-2007-8-12-r269
PMCID:
PMC2246271
Abstract Full Text PDF–1.9M
EGASP: the human ENCODE Genome Annotation Assessment Project
Roderic Guigó, Paul Flicek, Josep F Abril, Alexandre Reymond, Julien Lagarde, France Denoeud, Stylianos Antonarakis, Michael Ashburner, Vladimir B Bajic, Ewan Birney, Robert Castelo, Eduardo Eyras, Catherine Ucla, Thomas R Gingeras, Jennifer Harrow, Tim Hubbard, Suzanna E Lewis, Martin G Reese
Genome Biol. 2006; 7(Suppl 1): S2. Published online 2006 August 7. doi: 10.1186/gb-2006-7-s1-s2
PMCID:
PMC1810551
Abstract Full Text PDF–2.1M
Performance assessment of promoter predictions on ENCODE regions in the EGASP experiment
Vladimir B Bajic, Michael R Brent, Randall H Brown, Adam Frankish, Jennifer Harrow, Uwe Ohler, Victor V Solovyev, Sin Lam Tan
Genome Biol. 2006; 7(Suppl 1): S3. Published online 2006 August 7. doi: 10.1186/gb-2006-7-s1-s3
PMCID:
PMC1810552
Abstract Full Text PDF–918K Supplementary Material
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