pmc logo image
A computational approach for identifying pseudogenes in the ENCODE regions
Deyou Zheng, Mark B Gerstein
Genome Biol. 2006; 7(Suppl 1): S13. Published online 2006 August 7. doi: 10.1186/gb-2006-7-s1-s13
PMCID:
PMC1810550
Abstract Full Text PDF–218K
 Is Cited by the Following 9 Articles in this Archive:
Comprehensive analysis of the pseudogenes of glycolytic enzymes in vertebrates: the anomalously high number of GAPDH pseudogenes highlights a recent burst of retrotrans-positional activity
Yuen-Jong Liu, Deyou Zheng, Suganthi Balasubramanian, Nicholas Carriero, Ekta Khurana, Rebecca Robilotto, Mark B Gerstein
BMC Genomics. 2009; 10: 480. Published online 2009 October 16. doi: 10.1186/1471-2164-10-480
PMCID:
PMC2770531
Abstract Full Text PDF–362K Supplementary Material
Small RNAs Originated from Pseudogenes: cis- or trans-Acting?
Xingyi Guo, Zhaolei Zhang, Mark B. Gerstein, Deyou Zheng
PLoS Comput Biol. 2009 July; 5(7): e1000449. Published online 2009 July 31. doi: 10.1371/journal.pcbi.1000449
PMCID:
PMC2708354
Abstract Full Text PDF–1.0M Supplementary Material
Intergenic Locations of Rice Centromeric Chromatin
Huihuang Yan, Paul B Talbert, Hye-Ran Lee, Jamie Jett, Steven Henikoff, Feng Chen, Jiming Jiang
PLoS Biol. 2008 November; 6(11): e286. Published online 2008 November 25. doi: 10.1371/journal.pbio.0060286
PMCID:
PMC2586382
Abstract Full Text PDF–879K Supplementary Material
Asymmetric histone modifications between the original and derived loci of human segmental duplications
Deyou Zheng
Genome Biol. 2008; 9(7): R105. Published online 2008 July 3. doi: 10.1186/gb-2008-9-7-r105
PMCID:
PMC2530858
Abstract Full Text PDF–562K
Genome-wide identification of coding and non-coding conserved sequence tags in human and mouse genomes
Flavio Mignone, Anna Anselmo, Giacinto Donvito, Giorgio P Maggi, Giorgio Grillo, Graziano Pesole
BMC Genomics. 2008; 9: 277. Published online 2008 June 11. doi: 10.1186/1471-2164-9-277
PMCID:
PMC2442843
Abstract Full Text PDF–402K
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
The ENCODE Project Consortium
Nature. Author manuscript; available in PMC 2008 January 24.
Published in final edited form as: Nature. 2007 June 14; 447(7146): 799–816.
PMCID:
PMC2212820
Abstract Full Text PDF–2.0M Supplementary Material
Pseudogenes in the ENCODE regions: Consensus annotation, analysis of transcription, and evolution
Deyou Zheng, Adam Frankish, Robert Baertsch, Philipp Kapranov, Alexandre Reymond, Siew Woh Choo, Yontao Lu, France Denoeud, Stylianos E. Antonarakis, Michael Snyder, Yijun Ruan, Chia-Lin Wei, Thomas R. Gingeras, Roderic Guigó, Jennifer Harrow, Mark B. Gerstein
Genome Res. 2007 June; 17(6): 839–851. doi: 10.1101/gr.5586307
PMCID:
PMC1891343
Abstract Full Text PDF–1.2M
Pseudogene.org: a comprehensive database and comparison platform for pseudogene annotation
John E. Karro, Yangpan Yan, Deyou Zheng, Zhaolei Zhang, Nicholas Carriero, Philip Cayting, Paul Harrrison, Mark Gerstein
Nucleic Acids Res. 2007 January; 35(Database issue): D55–D60. Published online 2006 November 11. doi: 10.1093/nar/gkl851
PMCID:
PMC1669708
Abstract Full Text PDF–321K
EGASP: the human ENCODE Genome Annotation Assessment Project
Roderic Guigó, Paul Flicek, Josep F Abril, Alexandre Reymond, Julien Lagarde, France Denoeud, Stylianos Antonarakis, Michael Ashburner, Vladimir B Bajic, Ewan Birney, Robert Castelo, Eduardo Eyras, Catherine Ucla, Thomas R Gingeras, Jennifer Harrow, Tim Hubbard, Suzanna E Lewis, Martin G Reese
Genome Biol. 2006; 7(Suppl 1): S2. Published online 2006 August 7. doi: 10.1186/gb-2006-7-s1-s2
PMCID:
PMC1810551
Abstract Full Text PDF–2.1M
You are here: NCBI > Literature > PubMed Central
Write to the Help Desk