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AceView: a comprehensive cDNA-supported gene and transcripts annotation
Danielle Thierry-Mieg, Jean Thierry-Mieg
Genome Biol. 2006; 7(Suppl 1): S12. Published online 2006 August 7. doi: 10.1186/gb-2006-7-s1-s12
PMCID:
PMC1810549
Abstract Full Text PDF–202K Supplementary Material

Is Cited by the Following 92 Articles in this Archive:

Critical Evaluation of Imprinted Gene Expression by RNA–Seq: A New Perspective
Brian DeVeale, Derek van der Kooy, Tomas Babak
PLoS Genet. 2012 March; 8(3): e1002600. Published online 2012 March 29. doi: 10.1371/journal.pgen.1002600
PMCID:
PMC3315459
Abstract Full Text PDF–788K Supplementary Material
IL-35 Is a Novel Responsive Anti-inflammatory Cytokine — A New System of Categorizing Anti-inflammatory Cytokines
Xinyuan Li, Jietang Mai, Anthony Virtue, Ying Yin, Ren Gong, Xiaojin Sha, Stefanie Gutchigian, Andrew Frisch, Imani Hodge, Xiaohua Jiang, Hong Wang, Xiao-Feng Yang
PLoS One. 2012; 7(3): e33628. Published online 2012 March 16. doi: 10.1371/journal.pone.0033628
PMCID:
PMC3306427
Abstract Full Text PDF–988K Supplementary Material
Regulation of p130Cas/BCAR1 Expression in Tamoxifen-Sensitive and Tamoxifen-Resistant Breast Cancer Cells by EGR1 and NAB2
Joerg Kumbrink, Kathrin H Kirsch
Neoplasia. 2012 February; 14(2): 108–120.
PMCID:
PMC3306256
Abstract Full Text PDF–1.1M
Integrated cross-species transcriptional network analysis of metastatic susceptibility
Ying Hu, Gang Wu, Michael Rusch, Luanne Lukes, Kenneth H. Buetow, Jinghui Zhang, Kent W. Hunter
Proc Natl Acad Sci U S A. 2012 February 21; 109(8): 3184–3189. Published online 2012 January 30. doi: 10.1073/pnas.1117872109
PMCID:
PMC3286991
Free in PMC on 2012/08/21
CATCHprofiles: Clustering and Alignment Tool for ChIP Profiles
Fiona G. G. Nielsen, Kasper Galschiøt Markus, Rune Møllegaard Friborg, Lene Monrad Favrholdt, Hendrik G. Stunnenberg, Martijn Huynen
PLoS One. 2012; 7(1): e28272. Published online 2012 January 4. doi: 10.1371/journal.pone.0028272
PMCID:
PMC3251562
Abstract Full Text PDF–352K Supplementary Material
MicroRNAs and other mechanisms regulate interleukin-17 cytokines and receptors
Jietang Mai, Anthony Virtue, Erin Maley, Tran Tran, Ying Yin, Shu Meng, Meghana Pansuria, Xiaohua Jiang, Hong Wang, Xiao-Feng Yang
Front Biosci (Elite Ed) Author manuscript; available in PMC 2012 July 1.
Published in final edited form as: Front Biosci (Elite Ed). 2012 January 1; 4: 1478–1495.
PMCID:
PMC3289104
Free in PMC on 2012/07/01
Inherited variation at chromosome 12p13.33 including RAD52 influences squamous cell lung carcinoma risk
Jianxin Shi, Nilanjan Chatterjee, Melissa Rotunno, Yufei Wang, Angela C. Pesatori, Dario Consonni, Peng Li, William Wheeler, Peter Broderick, Marc Henrion, Timothy Eisen, Zhaoming Wang, Wei Chen, Qiong Dong, Demetrius Albanes, Michael Thun, Margaret R. Spitz, Pier Alberto Bertazzi, Neil E. Caporaso, Stephen J. Chanock, Christopher I. Amos, Richard S. Houlston, Maria Teresa Landi
Cancer Discov. Author manuscript; available in PMC 2012 August 1.
Published in final edited form as: Cancer Discov. 2012 February; 2(2): 131–139. Published online 2011 December 7. doi: 10.1158/2159-8290.CD-11-0246
PMCID:
PMC3354721
Free in PMC on 2012/08/01
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
Philippe Lamesch, Tanya Z. Berardini, Donghui Li, David Swarbreck, Christopher Wilks, Rajkumar Sasidharan, Robert Muller, Kate Dreher, Debbie L. Alexander, Margarita Garcia-Hernandez, Athikkattuvalasu S. Karthikeyan, Cynthia H. Lee, William D. Nelson, Larry Ploetz, Shanker Singh, April Wensel, Eva Huala
Nucleic Acids Res. 2012 January; 40(D1): D1202–D1210. Published online 2011 December 2. doi: 10.1093/nar/gkr1090
PMCID:
PMC3245047
Abstract Full Text PDF–243K
RecountDB: a database of mapped and count corrected transcribed sequences
Edward Wijaya, Martin C. Frith, Kiyoshi Asai, Paul Horton
Nucleic Acids Res. 2012 January; 40(D1): D1089–D1092. Published online 2011 December 1. doi: 10.1093/nar/gkr1172
PMCID:
PMC3245132
Abstract Full Text PDF–462K
Gene Array Analyzer: alternative usage of gene arrays to study alternative splicing events
Pascal Gellert, Mizue Teranishi, Katharina Jenniches, Piera De Gaspari, David John, Karsten grosse Kreymborg, Thomas Braun, Shizuka Uchida
Nucleic Acids Res. 2012 March; 40(6): 2414–2425. Published online 2011 November 28. doi: 10.1093/nar/gkr1110
PMCID:
PMC3315316
Abstract Full Text PDF–9.1M Supplementary Material
A Conserved PHD Finger Protein and Endogenous RNAi Modulate Insulin Signaling in Caenorhabditis elegans
Andres R. Mansisidor, Germano Cecere, Sebastian Hoersch, Morten B. Jensen, Trupti Kawli, Lisa M. Kennedy, Violeta Chavez, Man-Wah Tan, Jason D. Lieb, Alla Grishok
PLoS Genet. 2011 September; 7(9): e1002299. Published online 2011 September 29. doi: 10.1371/journal.pgen.1002299
PMCID:
PMC3183084
Abstract Full Text PDF–1.4M Supplementary Material
Endogenous Myoglobin in Breast Cancer Is Hypoxia-inducible by Alternative Transcription and Functions to Impair Mitochondrial Activity: A ROLE IN TUMOR SUPPRESSION?
Glen Kristiansen, Junmin Hu, Daniela Wichmann, Daniel P. Stiehl, Michael Rose, Josefine Gerhardt, Annette Bohnert, Anette ten Haaf, Holger Moch, James Raleigh, Mahesh A. Varia, Patrick Subarsky, Francesca M. Scandurra, Erich Gnaiger, Eva Gleixner, Anne Bicker, Max Gassmann, Thomas Hankeln, Edgar Dahl, Thomas A. Gorr
J Biol Chem. 2011 December 16; 286(50): 43417–43428. Published online 2011 September 19. doi: 10.1074/jbc.M111.227553
PMCID:
PMC3234873
Free in PMC on 2012/12/16
An alternative polyadenylation signal in TCF7L2 generates isoforms that inhibit T cell factor/lymphoid-enhancer factor (TCF/LEF)-dependent target genes
J. M. Locke, G. Da Silva Xavier, G. A. Rutter, L. W. Harries
Diabetologia. 2011 December; 54(12): 3078–3082. Published online 2011 September 14. doi: 10.1007/s00125-011-2290-6
PMCID:
PMC3210366
Abstract Full Text PDF–305K
Probing mammalian touch transduction
Diana M. Bautista, Ellen A. Lumpkin
J Gen Physiol. 2011 September; 138(3): 291–301. doi: 10.1085/jgp.201110637
Correction in:
J Gen Physiol. 2011 December; 138(6): 653.
PMCID:
PMC3171080
Full Text PDF–1.3M
An EMT–Driven Alternative Splicing Program Occurs in Human Breast Cancer and Modulates Cellular Phenotype
Irina M. Shapiro, Albert W. Cheng, Nicholas C. Flytzanis, Michele Balsamo, John S. Condeelis, Maja H. Oktay, Christopher B. Burge, Frank B. Gertler
PLoS Genet. 2011 August; 7(8): e1002218. Published online 2011 August 18. doi: 10.1371/journal.pgen.1002218
PMCID:
PMC3158048
Abstract Full Text PDF–4.3M Supplementary Material
Modulation of TRIM5α Activity in Human Cells by Alternatively Spliced TRIM5 Isoforms
Emilie Battivelli, Julie Migraine, Denise Lecossier, Saori Matsuoka, Danielle Perez-Bercoff, Sentob Saragosti, François Clavel, Allan J. Hance
J Virol. 2011 August; 85(15): 7828–7835. doi: 10.1128/JVI.00648-11
PMCID:
PMC3147942
Abstract Full Text PDF–783K Supplementary Material
Transcriptome Sequencing Identifies PCAT-1, a Novel lincRNA Implicated in Prostate Cancer Progression
John R. Prensner, Matthew K. Iyer, O. Alejandro Balbin, Saravana M. Dhanasekaran, Qi Cao, J. Chad Brenner, Bharathi Laxman, Irfan Asangani, Catherine Grasso, Hal D. Kominsky, Xuhong Cao, Xiaojun Jing, Xiaoju Wang, Javed Siddiqui, John T. Wei, Daniel Robinson, Hari K. Iyer, Nallasivam Palanisamy, Christopher A. Maher, Arul M. Chinnaiyan
Nat Biotechnol. Author manuscript; available in PMC 2012 February 1.
Published in final edited form as: Nat Biotechnol. 2011 July 31; 29(8): 742–749. doi: 10.1038/nbt.1914
PMCID:
PMC3152676
Abstract Full Text PDF–3.3M Supplementary Material
Comparative Studies of Vertebrate Lipoprotein Lipase: A Key Enzyme of Very Low Density Lipoprotein Metabolism
Roger S Holmes, John L Vandeberg, Laura A Cox
Comp Biochem Physiol Part D Genomics Proteomics. Author manuscript; available in PMC 2012 June 1.
Published in final edited form as: Comp Biochem Physiol Part D Genomics Proteomics. 2011 June; 6(2): 224–234. Published online 2011 April 22. doi: 10.1016/j.cbd.2011.04.003
PMCID:
PMC3102144
Free in PMC on 2012/06/01
Vertebrate hepatic lipase genes and proteins: a review supported by bioinformatic studies
Roger S Holmes, John L VandeBerg, Laura A Cox
Open Access Bioinformatics. Author manuscript; available in PMC 2012 March 9.
Published in final edited form as: Open Access Bioinformatics. 2011 April 22; 2011(3): 85–95. doi: 10.2147/OAB.S18401
PMCID:
PMC3298411
Abstract Full Text PDF–2.1M
Olfactomedin 2: Expression in the Eye and Interaction with Other Olfactomedin Domain–Containing Proteins
Afia Sultana, Naoki Nakaya, Vladimir V. Senatorov, Stanislav I. Tomarev
Invest Ophthalmol Vis Sci. 2011 April; 52(5): 2584–2592. Published online 2011 April 20. doi: 10.1167/iovs.10-6356
PMCID:
PMC3088551
Abstract Full Text PDF–1.8M
MAISTAS: a tool for automatic structural evaluation of alternative splicing products
Matteo Floris, Domenico Raimondo, Guido Leoni, Massimiliano Orsini, Paolo Marcatili, Anna Tramontano
Bioinformatics. 2011 June 15; 27(12): 1625–1629. Published online 2011 April 15. doi: 10.1093/bioinformatics/btr198
PMCID:
PMC3106191
Abstract Full Text PDF–417K
Identifying Causal Genes and Dysregulated Pathways in Complex Diseases
Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka
PLoS Comput Biol. 2011 March; 7(3): e1001095. Published online 2011 March 3. doi: 10.1371/journal.pcbi.1001095
PMCID:
PMC3048384
Abstract Full Text PDF–793K Supplementary Material
L-type Calcium Channel Auto-Regulation of Transcription
Jonathan Satin, Elizabeth A. Schroder, Shawn M. Crump
Cell Calcium. Author manuscript; available in PMC 2012 May 1.
Published in final edited form as: Cell Calcium. 2011 May; 49(5): 306–313. Published online 2011 February 3. doi: 10.1016/j.ceca.2011.01.001
PMCID:
PMC3097264
Abstract Full Text PDF–762K
Genome-Wide Homozygosity Analysis Reveals HADH Mutations as a Common Cause of Diazoxide-Responsive Hyperinsulinemic-Hypoglycemia in Consanguineous Pedigrees
Sarah E. Flanagan, Ann-Marie Patch, Jonathan M. Locke, Teoman Akcay, Enver Simsek, Mohammadreza Alaei, Zeinab Yekta, Meena Desai, Ritika R. Kapoor, Khalid Hussain, Sian Ellard
J Clin Endocrinol Metab. 2011 March; 96(3): E498–E502. Published online 2011 January 20. doi: 10.1210/jc.2010-1906
PMCID:
PMC3100671
Abstract Full Text
Nicotinamide Phosphoribosyltransferase in Human Diseases
Li Qin Zhang, Daniel P. Heruth, Shui Qing Ye
J Bioanal Biomed. Author manuscript; available in PMC 2011 November 30.
Published in final edited form as: J Bioanal Biomed. 2011 January 7; 3: 013–025. doi: 10.4172/1948-593X.1000038
PMCID:
PMC3227030
Abstract Full Text PDF–487K
Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia
Joseph L. McClay, Daniel E. Adkins, Karolina Åberg, Jozsef Bukszár, Amit N. Khachane, Richard S.E. Keefe, Diana O. Perkins, Joseph P. McEvoy, T. Scott Stroup, Robert E. Vann, Patrick M. Beardsley, Jeffrey A. Lieberman, Patrick F. Sullivan, Edwin J.C.G. van den Oord
Neuropsychopharmacology. Author manuscript; available in PMC 2011 August 1.
Published in final edited form as: Neuropsychopharmacology. 2011 February; 36(3): 616–626. Published online 2010 November 24. doi: 10.1038/npp.2010.193
PMCID:
PMC3055694
Abstract Full Text PDF–788K Supplementary Material
Effect of Data Combination on Predictive Modeling: A Study Using Gene Expression Data
Melanie Osl, Stephan Dreiseitl, Jihoon Kim, Kiltesh Patel, Christian Baumgartner, Lucila Ohno-Machado
AMIA Annu Symp Proc. 2010; 2010: 567–571. Published online 2010 November 13.
PMCID:
PMC3041313
Abstract Full Text PDF–382K
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing
Pier L. Martelli, Mattia D’Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna M. D’Erchia, Paolo D’Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole
Nucleic Acids Res. 2011 January; 39(Database issue): D80–D85. Published online 2010 November 4. doi: 10.1093/nar/gkq1073
PMCID:
PMC3013677
Abstract Full Text PDF–2.2M
Cross-platform Comparison of Two Pancreatic Cancer Phenotypes
Robert B. Scharpf, Christine A. Iacobuzio-Donahue, Leslie Cope, Ingo Ruczinski, Elizabeth Garrett-Mayer, Sindhu Lakkur, Domenico Campagna, Giovanni Parmigiani
Cancer Inform. 2010; 9: 257–264. Published online 2010 November 1. doi: 10.4137/CIN.S5755
PMCID:
PMC2978933
Abstract Full Text PDF–1.0M
ANKRD13C Acts as a Molecular Chaperone for G Protein-coupled Receptors
Audrey Parent, Sébastien J. Roy, Christian Iorio-Morin, Marie-Claude Lépine, Pascale Labrecque, Maxime A. Gallant, Deborah Slipetz, Jean-Luc Parent
J Biol Chem. 2010 December 24; 285(52): 40838–40851. Published online 2010 October 19. doi: 10.1074/jbc.M110.142257
PMCID:
PMC3003385
Abstract Full Text Supplementary Material
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