pmc logo image
AceView: a comprehensive cDNA-supported gene and transcripts annotation
Danielle Thierry-Mieg, Jean Thierry-Mieg
Genome Biol. 2006; 7(Suppl 1): S12. Published online 2006 August 7. doi: 10.1186/gb-2006-7-s1-s12
PMCID:
PMC1810549
Abstract Full Text PDF–202K Supplementary Material
Page of 3 Next Last
 Is Cited by the Following 80 Articles in this Archive:
CATCHprofiles: Clustering and Alignment Tool for ChIP Profiles
Fiona G. G. Nielsen, Kasper Galschiøt Markus, Rune Møllegaard Friborg, Lene Monrad Favrholdt, Hendrik G. Stunnenberg, Martijn Huynen
PLoS One. 2012; 7(1): e28272. Published online 2012 January 4. doi: 10.1371/journal.pone.0028272
PMCID:
PMC3251562
Abstract Full Text PDF–352K Supplementary Material
The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools
Philippe Lamesch, Tanya Z. Berardini, Donghui Li, David Swarbreck, Christopher Wilks, Rajkumar Sasidharan, Robert Muller, Kate Dreher, Debbie L. Alexander, Margarita Garcia-Hernandez, Athikkattuvalasu S. Karthikeyan, Cynthia H. Lee, William D. Nelson, Larry Ploetz, Shanker Singh, April Wensel, Eva Huala
Nucleic Acids Res. 2012 January; 40(D1): D1202–D1210. Published online 2011 December 2. doi: 10.1093/nar/gkr1090
PMCID:
PMC3245047
Abstract Full Text PDF–243K
RecountDB: a database of mapped and count corrected transcribed sequences
Edward Wijaya, Martin C. Frith, Kiyoshi Asai, Paul Horton
Nucleic Acids Res. 2012 January; 40(D1): D1089–D1092. Published online 2011 December 1. doi: 10.1093/nar/gkr1172
PMCID:
PMC3245132
Abstract Full Text PDF–462K
A Conserved PHD Finger Protein and Endogenous RNAi Modulate Insulin Signaling in Caenorhabditis elegans
Andres R. Mansisidor, Germano Cecere, Sebastian Hoersch, Morten B. Jensen, Trupti Kawli, Lisa M. Kennedy, Violeta Chavez, Man-Wah Tan, Jason D. Lieb, Alla Grishok
PLoS Genet. 2011 September; 7(9): e1002299. Published online 2011 September 29. doi: 10.1371/journal.pgen.1002299
PMCID:
PMC3183084
Abstract Full Text PDF–1.4M Supplementary Material
An alternative polyadenylation signal in TCF7L2 generates isoforms that inhibit T cell factor/lymphoid-enhancer factor (TCF/LEF)-dependent target genes
J. M. Locke, G. Da Silva Xavier, G. A. Rutter, L. W. Harries
Diabetologia. 2011 December; 54(12): 3078–3082. Published online 2011 September 14. doi: 10.1007/s00125-011-2290-6
PMCID:
PMC3210366
Abstract Full Text PDF–305K
An EMT–Driven Alternative Splicing Program Occurs in Human Breast Cancer and Modulates Cellular Phenotype
Irina M. Shapiro, Albert W. Cheng, Nicholas C. Flytzanis, Michele Balsamo, John S. Condeelis, Maja H. Oktay, Christopher B. Burge, Frank B. Gertler
PLoS Genet. 2011 August; 7(8): e1002218. Published online 2011 August 18. doi: 10.1371/journal.pgen.1002218
PMCID:
PMC3158048
Abstract Full Text PDF–4.3M Supplementary Material
Modulation of TRIM5α Activity in Human Cells by Alternatively Spliced TRIM5 Isoforms
Emilie Battivelli, Julie Migraine, Denise Lecossier, Saori Matsuoka, Danielle Perez-Bercoff, Sentob Saragosti, François Clavel, Allan J. Hance
J Virol. 2011 August; 85(15): 7828–7835. doi: 10.1128/JVI.00648-11
PMCID:
PMC3147942
Abstract Full Text PDF–783K Supplementary Material
Transcriptome Sequencing Identifies PCAT-1, a Novel lincRNA Implicated in Prostate Cancer Progression
John R. Prensner, Matthew K. Iyer, O. Alejandro Balbin, Saravana M. Dhanasekaran, Qi Cao, J. Chad Brenner, Bharathi Laxman, Irfan Asangani, Catherine Grasso, Hal D. Kominsky, Xuhong Cao, Xiaojun Jing, Xiaoju Wang, Javed Siddiqui, John T. Wei, Daniel Robinson, Hari K. Iyer, Nallasivam Palanisamy, Christopher A. Maher, Arul M. Chinnaiyan
Nat Biotechnol. Author manuscript; available in PMC 2012 February 1.
Published in final edited form as: Nat Biotechnol. 2011 July 31; 29(8): 742–749. doi: 10.1038/nbt.1914
PMCID:
PMC3152676
Abstract Full Text PDF–3.3M Supplementary Material
Olfactomedin 2: Expression in the Eye and Interaction with Other Olfactomedin Domain–Containing Proteins
Afia Sultana, Naoki Nakaya, Vladimir V. Senatorov, Stanislav I. Tomarev
Invest Ophthalmol Vis Sci. 2011 April; 52(5): 2584–2592. Published online 2011 April 20. doi: 10.1167/iovs.10-6356
PMCID:
PMC3088551
Abstract Full Text PDF–1.8M
MAISTAS: a tool for automatic structural evaluation of alternative splicing products
Matteo Floris, Domenico Raimondo, Guido Leoni, Massimiliano Orsini, Paolo Marcatili, Anna Tramontano
Bioinformatics. 2011 June 15; 27(12): 1625–1629. Published online 2011 April 15. doi: 10.1093/bioinformatics/btr198
PMCID:
PMC3106191
Abstract Full Text PDF–417K
Identifying Causal Genes and Dysregulated Pathways in Complex Diseases
Yoo-Ah Kim, Stefan Wuchty, Teresa M. Przytycka
PLoS Comput Biol. 2011 March; 7(3): e1001095. Published online 2011 March 3. doi: 10.1371/journal.pcbi.1001095
PMCID:
PMC3048384
Abstract Full Text PDF–793K Supplementary Material
Genome-Wide Homozygosity Analysis Reveals HADH Mutations as a Common Cause of Diazoxide-Responsive Hyperinsulinemic-Hypoglycemia in Consanguineous Pedigrees
Sarah E. Flanagan, Ann-Marie Patch, Jonathan M. Locke, Teoman Akcay, Enver Simsek, Mohammadreza Alaei, Zeinab Yekta, Meena Desai, Ritika R. Kapoor, Khalid Hussain, Sian Ellard
J Clin Endocrinol Metab. 2011 March; 96(3): E498–E502. Published online 2011 January 20. doi: 10.1210/jc.2010-1906
PMCID:
PMC3100671
Abstract Full Text
Nicotinamide Phosphoribosyltransferase in Human Diseases
Li Qin Zhang, Daniel P. Heruth, Shui Qing Ye
J Bioanal Biomed. Author manuscript; available in PMC 2011 November 30.
Published in final edited form as: J Bioanal Biomed. 2011 January 7; 3: 013–025. doi: 10.4172/1948-593X.1000038
PMCID:
PMC3227030
Abstract Full Text PDF–487K
Genome-wide pharmacogenomic study of neurocognition as an indicator of antipsychotic treatment response in schizophrenia
Joseph L. McClay, Daniel E. Adkins, Karolina Åberg, Jozsef Bukszár, Amit N. Khachane, Richard S.E. Keefe, Diana O. Perkins, Joseph P. McEvoy, T. Scott Stroup, Robert E. Vann, Patrick M. Beardsley, Jeffrey A. Lieberman, Patrick F. Sullivan, Edwin J.C.G. van den Oord
Neuropsychopharmacology. Author manuscript; available in PMC 2011 August 1.
Published in final edited form as: Neuropsychopharmacology. 2011 February; 36(3): 616–626. Published online 2010 November 24. doi: 10.1038/npp.2010.193
PMCID:
PMC3055694
Abstract Full Text PDF–788K Supplementary Material
Effect of Data Combination on Predictive Modeling: A Study Using Gene Expression Data
Melanie Osl, Stephan Dreiseitl, Jihoon Kim, Kiltesh Patel, Christian Baumgartner, Lucila Ohno-Machado
AMIA Annu Symp Proc. 2010; 2010: 567–571. Published online 2010 November 13.
PMCID:
PMC3041313
Abstract Full Text PDF–382K
ASPicDB: a database of annotated transcript and protein variants generated by alternative splicing
Pier L. Martelli, Mattia D’Antonio, Paola Bonizzoni, Tiziana Castrignanò, Anna M. D’Erchia, Paolo D’Onorio De Meo, Piero Fariselli, Michele Finelli, Flavio Licciulli, Marina Mangiulli, Flavio Mignone, Giulio Pavesi, Ernesto Picardi, Raffaella Rizzi, Ivan Rossi, Alessio Valletti, Andrea Zauli, Federico Zambelli, Rita Casadio, Graziano Pesole
Nucleic Acids Res. 2011 January; 39(Database issue): D80–D85. Published online 2010 November 4. doi: 10.1093/nar/gkq1073
PMCID:
PMC3013677
Abstract Full Text PDF–2.2M
Cross-platform Comparison of Two Pancreatic Cancer Phenotypes
Robert B. Scharpf, Christine A. Iacobuzio-Donahue, Leslie Cope, Ingo Ruczinski, Elizabeth Garrett-Mayer, Sindhu Lakkur, Domenico Campagna, Giovanni Parmigiani
Cancer Inform. 2010; 9: 257–264. Published online 2010 November 1. doi: 10.4137/CIN.S5755
PMCID:
PMC2978933
Abstract Full Text PDF–1.0M
ANKRD13C Acts as a Molecular Chaperone for G Protein-coupled Receptors
Audrey Parent, Sébastien J. Roy, Christian Iorio-Morin, Marie-Claude Lépine, Pascale Labrecque, Maxime A. Gallant, Deborah Slipetz, Jean-Luc Parent
J Biol Chem. 2010 December 24; 285(52): 40838–40851. Published online 2010 October 19. doi: 10.1074/jbc.M110.142257
PMCID:
PMC3003385
Abstract Full Text Supplementary Material
Recommended nomenclature for five mammalian carboxylesterase gene families: human, mouse, and rat genes and proteins
Roger S. Holmes, Matthew W. Wright, Stanley J. F. Laulederkind, Laura A. Cox, Masakiyo Hosokawa, Teruko Imai, Shun Ishibashi, Richard Lehner, Masao Miyazaki, Everett J. Perkins, Phillip M. Potter, Matthew R. Redinbo, Jacques Robert, Tetsuo Satoh, Tetsuro Yamashita, Bingfan Yan, Tsuyoshi Yokoi, Rudolf Zechner, Lois J. Maltais
Mamm Genome. Author manuscript; available in PMC 2011 October 8.
Published in final edited form as: Mamm Genome. 2010 October; 21(9-10): 427–441. Published online 2010 October 8. doi: 10.1007/s00335-010-9284-4
PMCID:
PMC3127206
Abstract Full Text PDF–1.0M
A testis-specific regulator of complex and hybrid N-glycan synthesis
Hung-Hsiang Huang, Pamela Stanley
J Cell Biol. 2010 September 6; 190(5): 893–910. doi: 10.1083/jcb.201004102
PMCID:
PMC2935569
Abstract Full Text PDF–8.2M Supplementary Material
Verifying expressed transcript variants by detecting and assembling stretches of consecutive exons
Tzu-Hung Hsiao, Chien-Hong Lin, Te-Tsui Lee, Ji-Yen Cheng, Pei-Kuen Wei, Eric Y. Chuang, Konan Peck
Nucleic Acids Res. 2010 November; 38(20): e187. Published online 2010 August 26. doi: 10.1093/nar/gkq754
PMCID:
PMC2978383
Abstract Full Text PDF–2.6M Supplementary Material
Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes
Rebecca A Chodroff, Leo Goodstadt, Tamara M Sirey, Peter L Oliver, Kay E Davies, Eric D Green, Zoltán Molnár, Chris P Ponting
Genome Biol. 2010; 11(7): R72. Published online 2010 July 12. doi: 10.1186/gb-2010-11-7-r72
PMCID:
PMC2926783
Abstract Full Text PDF–7.2M Supplementary Material
Using Deep RNA Sequencing for the Structural Annotation of the Laccaria Bicolor Mycorrhizal Transcriptome
Peter E. Larsen, Geetika Trivedi, Avinash Sreedasyam, Vincent Lu, Gopi K. Podila, Frank R. Collart
PLoS One. 2010; 5(7): e9780. Published online 2010 July 6. doi: 10.1371/journal.pone.0009780
PMCID:
PMC2897884
Abstract Full Text PDF–472K Supplementary Material
Comparative Studies of Mammalian Acid Lipases: Evidence for a New Gene Family in Mouse and Rat (Lipo)
Roger S Holmes, Laura A Cox, John L VandeBerg
Comp Biochem Physiol Part D Genomics Proteomics. Author manuscript; available in PMC 2011 September 1.
Published in final edited form as: Comp Biochem Physiol Part D Genomics Proteomics. 2010 September; 5(3): 217–226. Published online 2010 June 11. doi: 10.1016/j.cbd.2010.05.004
PMCID:
PMC2917524
Abstract Full Text PDF–1.8M Supplementary Material
Genomic Features of the Human Dopamine Transporter Gene and Its Potential Epigenetic States: Implications for Phenotypic Diversity
Elena Shumay, Joanna S. Fowler, Nora D. Volkow
PLoS One. 2010; 5(6): e11067. Published online 2010 June 10. doi: 10.1371/journal.pone.0011067
PMCID:
PMC2883569
Abstract Full Text PDF–610K Supplementary Material
The Landscape of C. elegans 3′UTRs
Marco Mangone, Arun Prasad Manoharan, Danielle Thierry-Mieg, Jean Thierry-Mieg, Ting Han, Sebastian D. Mackowiak, Emily Mis, Charles Zegar, Michelle R. Gutwein, Vishal Khivansara, Oliver Attie, Kevin Chen, Kourosh Salehi-Ashtiani, Marc Vidal, Timothy T. Harkins, Pascal Bouffard, Yutaka Suzuki, Sumio Sugano, Yuji Kohara, Nikolaus Rajewsky, Fabio Piano, Kristin C. Gunsalus, John K. Kim
Science. Author manuscript; available in PMC 2011 July 24.
Published in final edited form as: Science. 2010 July 23; 329(5990): 432–435. Published online 2010 June 3. doi: 10.1126/science.1191244
PMCID:
PMC3142571
Abstract Full Text PDF–1.3M Supplementary Material
Identification and characterization of putative methylation targets in the MAOA locus using bioinformatic approaches
Elena Shumay, Joanna S. Fowler
Epigenetics. Author manuscript; available in PMC 2011 September 8.
Published in final edited form as: Epigenetics. 2010 May 16; 5(4): 325–342. Published online 2010 May 5.
PMCID:
PMC3169210
Abstract Full Text PDF–1.1M Supplementary Material
Mammalian carboxylesterase 3: comparative genomics and proteomics
Roger S. Holmes, Laura A. Cox, John L. VandeBerg
Genetica. Author manuscript; available in PMC 2011 July 1.
Published in final edited form as: Genetica. 2010 July; 138(7): 695–708. Published online 2010 April 28. doi: 10.1007/s10709-010-9438-z
PMCID:
PMC2896070
Abstract Full Text PDF–4.3M
Deletion of the WD40 Domain of LRRK2 in Zebrafish Causes Parkinsonism-Like Loss of Neurons and Locomotive Defect
Donglai Sheng, Dianbo Qu, Ken Hon Hung Kwok, Seok Shin Ng, Adrian Yin Ming Lim, Sharon Siqi Aw, Charlie Wah Heng Lee, Wing Kin Sung, Eng King Tan, Thomas Lufkin, Suresh Jesuthasan, Mathavan Sinnakaruppan, Jianjun Liu
PLoS Genet. 2010 April; 6(4): e1000914. Published online 2010 April 22. doi: 10.1371/journal.pgen.1000914
PMCID:
PMC2858694
Abstract Full Text PDF–1.3M Supplementary Material
Target mRNA abundance dilutes microRNA and siRNA activity
Aaron Arvey, Erik Larsson, Chris Sander, Christina S Leslie, Debora S Marks
Mol Syst Biol. 2010; 6: 363. Published online 2010 April 20. doi: 10.1038/msb.2010.24
PMCID:
PMC2872614
Abstract Full Text PDF–435K Supplementary Material
Page of 3 Next Last
You are here: NCBI > Literature > PubMed Central
Write to the Help Desk