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Copyright © 2007 by The American Society for Cell Biology Seeing Cells on the Web Howard Hughes Medical Institute, Chevy Chase, MD 20815 Corresponding author.Address correspondence to: Dennis Liu ( Email: dliu/at/hhmi.org) This article has been cited by other articles in PMC.INTRODUCTION Cells are the fundamental unit of life and disease; therefore, many avenues of research converge on cells, making images of cells prominent in research and teaching. Besides, cells are beautiful, and a gorgeous photo of a cell can spice up an otherwise dreary talk. Much of the progress of modern biomedical science can be tied to advances in our ability to better visualize the functional morphology of cells, including higher resolution imaging, informative molecular tags, and techniques for making observations in living cells. Given the microscopic scale that cells inhabit, and the variety of imaging techniques used to visualize them, it's not surprising that students are both inspired and confused by cells. How big are they? What shapes can they exhibit? How do cells perform their myriad functions? How do scientists produce all those pretty colors? This Feature describes websites that would help answer these and other important questions about cells, as well as sites that would help address some common sources of difficulty in the presentation of cellular information. THE POWER OF 10 Let's begin with the issue of scale. A common problem for many students in understanding the sizes of cells is photomicrographs without scale bars, or unlabeled scale bars, or changing scale bars to make matters worse. On the other hand, scale bars can mar a beautiful image, and students often ignore the information they provide. Scale in the natural world is important and interesting enough to be worthy of explicit discussion with students. Many readers may be familiar with the classic film Powers of 10 by Charles and Ray Eames. I first saw the film when it came out in 1977 and I was in high school. The film made a lasting impression on me, in part because the setting is a park in my native Chicago. The film has been paid homage in many creative ways over the years, including a beautiful IMAX version and a hilarious animated feature of a child on a pogo stick jumping by powers of 10, over the hedge, over the rooftops, and then out into the universe. The official Eames Powers of 10 website (www.powersof10.com) makes the original film available, along with some other useful features (Figure 1
BEYOND THE BAG OF JELLO Cells are tiny, and yet they are nearly incomprehensibly complicated. To paraphrase Lewis Thomas in The Lives of a Cell, a cell isn't like a little chemical factory; a cell is like a crowded metropolis, packed with structures and conveyances frenetically shuttling goods. In an effort to simplify and teach clearly, various organelles are usually treated in isolation, the interactions between structures and molecules are reduced to the minimum number of players, and students can get the impression that a cell's activity is carefully orchestrated by invisible hands. Fortunately, a powerful animated antidote has recently become available through the Department of Molecular and Cellular Biology at Harvard. The “Inner Life of the Cell” and related animations (multimedia.mcb.harvard.edu/media.html) were produced by Alain Veil, Robert Lue, and colleagues for use in undergraduate courses (Figure 2
Animations are powerful, but they are representations that synthesize experimental observations while making numerous assumptions and simplifications. Cell biologists and microscopists have been making real movies of living cells for decades, and there are some excellent sources of movies on the Web. The publisher of CBE—Life Sciences Education, the American Society of Cell Biology (ASCB), publishes a website called the ASCB Image & Video Library (http://cellimages.ascb.org/). This fledgling website has only 12 movies so far, but they are excellent, like the supremely beautiful “Dance of the Chromosomes.” Most of the movies are in the “Nucleus” section, which also has great still images. There are 40 resources in the “Cytoplasm” section, including some movies. The oddly named “Founders” category betrays the historical emphasis of the website, which is heavy on electron microscopic (EM) images. The rigorous documentation of each resource is welcome, and although the historical approach has limited appeal, it has obvious value, at least to instructors. The site has useful features designed to make the images easily adaptable for use in presentations and publications, like the ability to zoom and rotate images. And fortunately, scale bars are prominent and well labeled! The ASCB library is run like a true collection with a curator, peer reviewers, and accession notes. I think in the future, when this site has 100 videomicroscopy movies, 100 animations, and 1000 photos, the categories and indexing features will naturally improve. The video library is a potential treasure that should be supported, and they are looking for both reviewers and contributions. Movies are also available on the popular Cells Alive! website (www.cellsalive.com). Jim Sullivan's website has been winning kudos since the mid-1990s (Figure 3
ALL THE PRETTY COLORS One of the best websites for finding detailed information on various optical methods, digital enhancements, and fluorescent reagents is Michael Davidson's Molecular Expressions (http://micro.magnet.fsu.edu) affiliated with Florida State University and the National High Magnetic Field lab (Figure 4
TIP OF THE ICEBERG OR ONION Beautiful images can be so captivating that we may forget that pictures of cells provide scientific information; images are data. As an undergraduate, I was dubious about the notion that I could learn anything about cellular functions by looking at fixed and sectioned cells. But scoring and counting cells at various stages of mitosis in a plant root tip to calculate the time a cell spent at various stages in mitosis taught me a lot about sampling, the power of simple calculations, and how to extract functional information from snapshot data. I was hoping to find a version of this classic experiment on the Web and my quest was rewarded by a resource at the University of Arizona. The University of Arizona Biology Project has an excellent set of cell biology tutorials (www.biology.arizona.edu/Cell_bio/cell_bio.html). The tutorials feature good graphics and some photos, covering membranes, signaling, cytoskeleton, cell cycle, cell division, and the intracellular organization of cells. The website has a very nice simulation of the classic cell-cycle calculation exercise. Following an optional tutorial on mitosis, I discovered a series of onion cell micrographs and was tasked to categorize each cell as being in interphase, prophase, metaphase, anaphase, or telophase (Figure 5
OTHER NOTEWORTHY WEBSITES North Dakota State University's Virtual Cell animation collection (http://vcell.ndsu.nodak.edu/animations/) began as an online game aimed at undergraduates. The creators soon realized, however, that the beautiful 3D graphics that they had created for the game environment would also be useful in more standard didactic settings. The First Look, Advanced Look, and Run Animation options, are a simple and very smart idea that animation developers should consider adopting more widely. In the First Look and Advanced Look, snapshots from the animations are presented in storyboard manner to identify key players and explain briefly the action, with the Advanced Look doing so in more detail. My intuition that these viewing options should be an effective method to increase learning, retention, and understanding is supported by assessment data (McClean et al., 2005 ). Unfortunately, the animations are only available in Windows Media format, a drawback given the high number of Macintosh users in life sciences education.The following websites from Emory University, University of Washington, Queen's University in Ontario, and the University of Delaware have good information and images if you are particularly interested in confocal microscopy: http://www.physics.emory.edu/~weeks/confocal/; http://depts.washington.edu/keck/intro.htm; http://meds.queensu.ca/qcri/flow/cri-cm.htm; and http://www.udel.edu/Biology/Wags/wagart/confocalpage/confocal.html. The Micropolitan Museum from the Institute for the Promotion of the Less Than One Millimeter (www.microscopy-uk.org.uk/micropolitan/index.html) is a clever virtual museum of microscopic creatures. Visit “the floorplan” to fully appreciate curator Wim van Egmond's concept. Cells! and ER! (www.danforthcenter.org/Cells/) websites from the Danforth Plant Science Center produced by R. Howard Berg have a nice collection of plant cell images and some movies made from serial section reconstructions. An online resource for cell and molecular biologists, Cell & Molecular Biology Online (www.cellbio.com/images.html), has a set of links to many online collections of images. Micromacro is a nicely executed website by photographer Sinclair Stammers (www.micromacro.co.uk/index.htm). The site has beautiful images of living forms including cells and a simple, well-designed viewing console. A student and teacher collaboration website (http://library.thinkquest.org/12413/) from the Oracle Education Foundation competition is a very nice example of student work featuring good drawings and links for cell biology. As always, comments and suggestions for future topics are welcome and can be sent to Dennis Liu at
dliu/at/hhmi.org. REFERENCES
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Cell Biol Educ. 2005 Summer; 4(2):169-79.
[Cell Biol Educ. 2005]