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Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics
Klaas Vandepoele, Tineke Casneuf, Yves Van de Peer
Genome Biol. 2006; 7(11): R103. Published online 2006 November 7. doi: 10.1186/gb-2006-7-11-r103
PMCID:
PMC1794593
Abstract Full Text PDF–574K Supplementary Material
 Is Cited by the Following 12 Articles in this Archive:
Thousands of Cis-Regulatory Sequence Combinations Are Shared by Arabidopsis and Poplar
Jun Ding, Haiyan Hu, Xiaoman Li
Plant Physiol. 2012 January; 158(1): 145–155. doi: 10.1104/pp.111.186080
PMCID:
PMC3252106
Abstract Full Text PDF–493K
Distribution of short interstitial telomere motifs in two plant genomes: putative origin and function
Christine Gaspin, Jean-François Rami, Bernard Lescure
BMC Plant Biol. 2010; 10: 283. Published online 2010 December 20. doi: 10.1186/1471-2229-10-283
PMCID:
PMC3022908
Abstract Full Text PDF–492K Supplementary Material
Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana
Jelle Van Leene, Jens Hollunder, Dominique Eeckhout, Geert Persiau, Eveline Van De Slijke, Hilde Stals, Gert Van Isterdael, Aurine Verkest, Sandy Neirynck, Yelle Buffel, Stefanie De Bodt, Steven Maere, Kris Laukens, Anne Pharazyn, Paulo C G Ferreira, Nubia Eloy, Charlotte Renne, Christian Meyer, Jean-Denis Faure, Jens Steinbrenner, Jim Beynon, John C Larkin, Yves Van de Peer, Pierre Hilson, Martin Kuiper, Lieven De Veylder, Harry Van Onckelen, Dirk Inzé, Erwin Witters, Geert De Jaeger
Mol Syst Biol. 2010; 6: 397. Published online 2010 August 10. doi: 10.1038/msb.2010.53
PMCID:
PMC2950081
Abstract Full Text PDF–1.7M Supplementary Material
The MCM-Binding Protein ETG1 Aids Sister Chromatid Cohesion Required for Postreplicative Homologous Recombination Repair
Naoki Takahashi, Mauricio Quimbaya, Veit Schubert, Tim Lammens, Klaas Vandepoele, Ingo Schubert, Minami Matsui, Dirk Inzé, Geert Berx, Lieven De Veylder
PLoS Genet. 2010 January; 6(1): e1000817. Published online 2010 January 15. doi: 10.1371/journal.pgen.1000817
PMCID:
PMC2806904
Abstract Full Text PDF–1.6M Supplementary Material
In Silico Evaluation of Predicted Regulatory Interactions in Arabidopsis thaliana
Damion Nero, Manpreet S Katari, Jonathan Kelfer, Daniel Tranchina, Gloria M Coruzzi
BMC Bioinformatics. 2009; 10: 435. Published online 2009 December 21. doi: 10.1186/1471-2105-10-435
PMCID:
PMC2803859
Abstract Full Text PDF–487K Supplementary Material
Discovery of cis-elements between sorghum and rice using co-expression and evolutionary conservation
Xi Wang, Georg Haberer, Klaus FX Mayer
BMC Genomics. 2009; 10: 284. Published online 2009 June 26. doi: 10.1186/1471-2164-10-284
PMCID:
PMC2714861
Abstract Full Text PDF–1.9M Supplementary Material
Unraveling Transcriptional Control in Arabidopsis Using cis-Regulatory Elements and Coexpression Networks
Klaas Vandepoele, Mauricio Quimbaya, Tine Casneuf, Lieven De Veylder, Yves Van de Peer
Plant Physiol. 2009 June; 150(2): 535–546. doi: 10.1104/pp.109.136028
PMCID:
PMC2689962
Abstract Full Text PDF–674K Supplementary Material
In Vivo Interference with AtTCP20 Function Induces Severe Plant Growth Alterations and Deregulates the Expression of Many Genes Important for Development
Christine Hervé, Patrick Dabos, Claude Bardet, Alain Jauneau, Marie Christine Auriac, Agnès Ramboer, Fabrice Lacout, Dominique Tremousaygue
Plant Physiol. 2009 March; 149(3): 1462–1477. doi: 10.1104/pp.108.126136
PMCID:
PMC2649380
Abstract Full Text PDF–2.1M Supplementary Material
The PRA1 Gene Family in Arabidopsis
Claire Lessa Alvim Kamei, Joanna Boruc, Klaas Vandepoele, Hilde Van den Daele, Sara Maes, Eugenia Russinova, Dirk Inzé, Lieven De Veylder
Plant Physiol. 2008 August; 147(4): 1735–1749. doi: 10.1104/pp.108.122226
PMCID:
PMC2492607
Abstract Full Text PDF–2.9M Supplementary Material
Annotating Genes of Known and Unknown Function by Large-Scale Coexpression Analysis
Kevin Horan, Charles Jang, Julia Bailey-Serres, Ron Mittler, Christian Shelton, Jeff F. Harper, Jian-Kang Zhu, John C. Cushman, Martin Gollery, Thomas Girke
Plant Physiol. 2008 May; 147(1): 41–57. doi: 10.1104/pp.108.117366
PMCID:
PMC2330292
Abstract Full Text PDF–837K Supplementary Material
High-resolution analysis of condition-specific regulatory modules in Saccharomyces cerevisiae
Hun-Goo Lee, Hyo-Soo Lee, Sang-Hoon Jeon, Tae-Hoon Chung, Young-Sung Lim, Won-Ki Huh
Genome Biol. 2008; 9(1): R2. Published online 2008 January 3. doi: 10.1186/gb-2008-9-1-r2
PMCID:
PMC2395236
Abstract Full Text PDF–1.4M Supplementary Material
G-Boxes, Bigfoot Genes, and Environmental Response: Characterization of Intragenomic Conserved Noncoding Sequences in Arabidopsis
Michael Freeling, Lakshmi Rapaka, Eric Lyons, Brent Pedersen, Brian C. Thomas
Plant Cell. 2007 May; 19(5): 1441–1457. doi: 10.1105/tpc.107.050419
PMCID:
PMC1913728
Abstract Full Text PDF–799K Supplementary Material
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