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Metabolic network driven analysis of genome-wide transcription data from Aspergillus nidulans
Helga David, Gerald Hofmann, Ana Paula Oliveira, Hanne Jarmer, Jens Nielsen
Genome Biol. 2006; 7(11): R108. Published online 2006 November 15. doi: 10.1186/gb-2006-7-11-r108
PMCID:
PMC1794588
Abstract Full Text PDF–417K Supplementary Material

Is Cited by the Following 13 Articles in this Archive:

Cytosolic NADPH balancing in Penicillium chrysogenum cultivated on mixtures of glucose and ethanol
Zheng Zhao, Karel Kuijvenhoven, Walter M. van Gulik, Joseph J. Heijnen, Wouter A. van Winden, Peter J. T. Verheijen
Appl Microbiol Biotechnol. 2011 January; 89(1): 63–72. Published online 2010 August 31. doi: 10.1007/s00253-010-2851-5
PMCID:
PMC3016204
Abstract Full Text PDF–480K
ATP-Citrate Lyase Is Required for Production of Cytosolic Acetyl Coenzyme A and Development in Aspergillus nidulans
Michael J. Hynes, Sandra L. Murray
Eukaryot Cell. 2010 July; 9(7): 1039–1048. doi: 10.1128/EC.00080-10
PMCID:
PMC2901662
Abstract Full Text PDF–2.9M
Transcriptional regulation of gene expression clusters in motor neurons following spinal cord injury
Jesper Ryge, Ole Winther, Jacob Wienecke, Albin Sandelin, Ann-Charlotte Westerdahl, Hans Hultborn, Ole Kiehn
BMC Genomics. 2010; 11: 365. Published online 2010 June 9. doi: 10.1186/1471-2164-11-365
PMCID:
PMC2900267
Abstract Full Text PDF–2.0M Supplementary Material
Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes
Aleksej Zelezniak, Tune H. Pers, Simão Soares, Mary Elizabeth Patti, Kiran Raosaheb Patil
PLoS Comput Biol. 2010 April; 6(4): e1000729. Published online 2010 April 1. doi: 10.1371/journal.pcbi.1000729
PMCID:
PMC2848542
Abstract Full Text PDF–558K Supplementary Material
Metabolic and Developmental Effects Resulting from Deletion of the citA Gene Encoding Citrate Synthase in Aspergillus nidulans
Sandra L. Murray, Michael J. Hynes
Eukaryot Cell. 2010 April; 9(4): 656–666. doi: 10.1128/EC.00373-09
PMCID:
PMC2863417
Abstract Full Text PDF–1.6M
Applications of genome-scale metabolic reconstructions
Matthew A Oberhardt, Bernhard Ø Palsson, Jason A Papin
Mol Syst Biol. 2009; 5: 320. Published online 2009 November 3. doi: 10.1038/msb.2009.77
PMCID:
PMC2795471
Abstract Full Text PDF–2.6M
Gene Expression Profiling and the Use of Genome-Scale In Silico Models of Escherichia coli for Analysis: Providing Context for Content
Nathan E. Lewis, Byung-Kwan Cho, Eric M. Knight, Bernhard O. Palsson
J Bacteriol. 2009 June; 191(11): 3437–3444. Published online 2009 April 10. doi: 10.1128/JB.00034-09
PMCID:
PMC2681886
Full Text PDF–684K
Systems Analysis Unfolds the Relationship between the Phosphoketolase Pathway and Growth in Aspergillus nidulans
Gianni Panagiotou, Mikael R. Andersen, Thomas Grotkjær, Torsten B. Regueira, Gerald Hofmann, Jens Nielsen, Lisbeth Olsson
PLoS ONE. 2008; 3(12): e3847. Published online 2008 December 4. doi: 10.1371/journal.pone.0003847
PMCID:
PMC2585806
Abstract Full Text PDF–368K Supplementary Material
Context-Specific Metabolic Networks Are Consistent with Experiments
Scott A. Becker, Bernhard O. Palsson
PLoS Comput Biol. 2008 May; 4(5): e1000082. Published online 2008 May 16. doi: 10.1371/journal.pcbi.1000082
PMCID:
PMC2366062
Abstract Full Text PDF–509K
Analysis of Aspergillus nidulans metabolism at the genome-scale
Helga David, İlknur Ş Özçelik, Gerald Hofmann, Jens Nielsen
BMC Genomics. 2008; 9: 163. Published online 2008 April 11. doi: 10.1186/1471-2164-9-163
PMCID:
PMC2386489
Abstract Full Text PDF–729K Supplementary Material
Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger
Mikael Rørdam Andersen, Michael Lynge Nielsen, Jens Nielsen
Mol Syst Biol. 2008; 4: 178. Published online 2008 March 25. doi: 10.1038/msb.2008.12
PMCID:
PMC2290933
Abstract Full Text PDF–495K Supplementary Material
Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
Matthew A. Oberhardt, Jacek Puchałka, Kimberly E. Fryer, Vítor A. P. Martins dos Santos, Jason A. Papin
J Bacteriol. 2008 April; 190(8): 2790–2803. Published online 2008 January 11. doi: 10.1128/JB.01583-07
PMCID:
PMC2293256
Abstract Full Text PDF–1.0M Supplementary Material
Transcriptional Control of Gluconeogenesis in Aspergillus nidulans
Michael J. Hynes, Edyta Szewczyk, Sandra L. Murray, Yumi Suzuki, Meryl A. Davis, Heather M. Sealy-Lewis
Genetics. 2007 May; 176(1): 139–150. doi: 10.1534/genetics.107.070904
PMCID:
PMC1893031
Abstract Full Text PDF–988K
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