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Genome-wide identification of functionally distinct subsets of cellular mRNAs associated with two nucleocytoplasmic-shuttling mammalian splicing factors
Margarida Gama-Carvalho, Nuno L Barbosa-Morais, Alexander S Brodsky, Pamela A Silver, Maria Carmo-Fonseca
Genome Biol. 2006; 7(11): R113. Published online 2006 November 30. doi: 10.1186/gb-2006-7-11-r113
PMCID:
PMC1794580
Abstract Full Text PDF–566K Supplementary Material

Is Cited by the Following 19 Articles in this Archive:

Polypyrimidine Tract Binding Protein (hnRNP I) Is Possibly a Conserved Modulator of miRNA-Mediated Gene Regulation
Bart Engels, Guillaume Jannot, Judit Remenyi, Martin J. Simard, György Hutvagner
PLoS One. 2012; 7(3): e33144. Published online 2012 March 9. doi: 10.1371/journal.pone.0033144
PMCID:
PMC3302860
Abstract Full Text PDF–1.1M Supplementary Material
RBM4 down-regulates PTB and antagonizes its activity in muscle cell–specific alternative splicing
Jung-Chun Lin, Woan-Yuh Tarn
J Cell Biol. 2011 May 2; 193(3): 509–520. doi: 10.1083/jcb.201007131
PMCID:
PMC3087008
Abstract Full Text PDF–2.4M Supplementary Material
HITS-CLIP: panoramic views of protein-RNA regulation in living cells
Robert B. Darnell
Wiley Interdiscip Rev RNA. Author manuscript; available in PMC 2011 November 22.
Published in final edited form as: Wiley Interdiscip Rev RNA. 2010 Sep-Oct; 1(2): 266–286. Published online 2010 August 2. doi: 10.1002/wrna.31
PMCID:
PMC3222227
Abstract Full Text PDF–4.6M Supplementary Material
High Glucose Suppresses Human Islet Insulin Biosynthesis by Inducing miR-133a Leading to Decreased Polypyrimidine Tract Binding Protein-Expression
Rikard G. Fred, Claus H. Bang-Berthelsen, Thomas Mandrup-Poulsen, Lars G. Grunnet, Nils Welsh
PLoS One. 2010; 5(5): e10843. Published online 2010 May 26. doi: 10.1371/journal.pone.0010843
PMCID:
PMC2877094
Abstract Full Text PDF–336K
Genome-wide analysis of PTB-RNA interactions reveals a strategy used by the general splicing repressor to modulate exon inclusion or skipping
Yuanchao Xue, Yu Zhou, Tongbin Wu, Tuo Zhu, Xiong Ji, Young-Soo Kwon, Chao Zhang, Gene Yeo, Douglas L. Black, Hui Sun, Fu Xiang-Dong, Yi Zhang
Mol Cell. Author manuscript; available in PMC 2010 December 25.
Published in final edited form as: Mol Cell. 2009 December 25; 36(6): 996–1006. doi: 10.1016/j.molcel.2009.12.003
PMCID:
PMC2807993
Abstract Full Text PDF–1.9M Supplementary Material
Next-generation SELEX identifies sequence and structural determinants of splicing factor binding in human pre-mRNA sequence
Daniel C. Reid, Brian L. Chang, Samuel I. Gunderson, Lauren Alpert, William A. Thompson, William G. Fairbrother
RNA. 2009 December; 15(12): 2385–2397. doi: 10.1261/rna.1821809
PMCID:
PMC2779669
Abstract Full Text PDF–944K
Interactome for Auxiliary Splicing Factor U2AF65 Suggests Diverse Roles
Justin R. Prigge, Sonya V. Iverson, Ashley M. Siders, Edward E. Schmidt
Biochim Biophys Acta. Author manuscript; available in PMC 2010 June 1.
Published in final edited form as: Biochim Biophys Acta. 2009 Jun–Aug; 1789(6-8): 487–492. Published online 2009 June 18. doi: 10.1016/j.bbagrm.2009.06.002
PMCID:
PMC2748126
Abstract Full Text PDF–1.7M
Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs
Barrett C Foat, Gary D Stormo
Mol Syst Biol. 2009; 5: 268. Published online 2009 April 28. doi: 10.1038/msb.2009.24
PMCID:
PMC2683727
Abstract Full Text PDF–654K Supplementary Material
The Polypyrimidine Tract-binding Protein Is Required for Efficient Dengue Virus Propagation and Associates with the Viral Replication Machinery
Azlinda Anwar, K. M. Leong, Mary L. Ng, Justin J. H. Chu, Mariano A. Garcia-Blanco
J Biol Chem. 2009 June 19; 284(25): 17021–17029. Published online 2009 April 20. doi: 10.1074/jbc.M109.006239
PMCID:
PMC2719340
Abstract Full Text Supplementary Material
THE DOMAINS OF POLYPYRIMIDINE TRACT BINDING PROTEIN HAVE DISTINCT RNA STRUCTURAL PREFERENCES
Caroline Clerte, Kathleen B Hall
Biochemistry. Author manuscript; available in PMC 2010 March 17.
Published in final edited form as: Biochemistry. 2009 March 17; 48(10): 2063–2074. doi: 10.1021/bi8016872
PMCID:
PMC2766422
Abstract Full Text PDF–4.0M Supplementary Material
Splicing factor SFRS1 recognizes a functionally diverse landscape of RNA transcripts
Jeremy R. Sanford, Xin Wang, Matthew Mort, Natalia VanDuyn, David N. Cooper, Sean D. Mooney, Howard J. Edenberg, Yunlong Liu
Genome Res. 2009 March; 19(3): 381–394. doi: 10.1101/gr.082503.108
PMCID:
PMC2661799
Abstract Full Text PDF–1.1M
Functionally related transcripts have common RNA motifs for specific RNA-binding proteins in trypanosomes
Griselda Noé, Javier G De Gaudenzi, Alberto C Frasch
BMC Mol Biol. 2008; 9: 107. Published online 2008 December 8. doi: 10.1186/1471-2199-9-107
PMCID:
PMC2637893
Abstract Full Text PDF–1.6M Supplementary Material
Identification of Nuclear and Cytoplasmic mRNA Targets for the Shuttling Protein SF2/ASF
Jeremy R. Sanford, Pedro Coutinho, Jamie A. Hackett, Xin Wang, William Ranahan, Javier F. Caceres
PLoS ONE. 2008; 3(10): e3369. Published online 2008 October 8. doi: 10.1371/journal.pone.0003369
PMCID:
PMC2556390
Abstract Full Text PDF–487K Supplementary Material
Regulation of Cyclin D1 RNA stability by SNIP1
Cameron P. Bracken, Steven J. Wall, Benjamin Barré, Kostya I. Panov, Paul M. Ajuh, Neil D. Perkins
Cancer Res. Author manuscript; available in PMC 2009 March 15.
Published in final edited form as: Cancer Res. 2008 September 15; 68(18): 7621–7628. doi: 10.1158/0008-5472.CAN-08-1217
PMCID:
PMC2546513
Abstract Full Text PDF–977K Supplementary Material
Fas Splicing Regulation during Early Apoptosis Is Linked to Caspase-mediated Cleavage of U2AF65
José M. Izquierdo
Mol Biol Cell. 2008 August; 19(8): 3299–3307. doi: 10.1091/mbc.E07-11-1125
PMCID:
PMC2488311
Abstract Full Text PDF–1.2M Supplementary Material
A BBP–Mud2p heterodimer mediates branchpoint recognition and influences splicing substrate abundance in budding yeast
Qiang Wang, Li Zhang, Bert Lynn, Brian C. Rymond
Nucleic Acids Res. 2008 May; 36(8): 2787–2798. Published online 2008 May. doi: 10.1093/nar/gkn144
PMCID:
PMC2377449
Abstract Full Text PDF–428K
Global analysis of mRNA splicing
Michael J. Moore, Pamela A. Silver
RNA. 2008 February; 14(2): 197–203. doi: 10.1261/rna.868008
PMCID:
PMC2212243
Abstract Full Text PDF–219K
A genome-wide approach identifies distinct but overlapping subsets of cellular mRNAs associated with Staufen1- and Staufen2-containing ribonucleoprotein complexes
Luc Furic, Marjolaine Maher-Laporte, Luc DesGroseillers
RNA. 2008 February; 14(2): 324–335. doi: 10.1261/rna.720308
PMCID:
PMC2212254
Abstract Full Text PDF–382K
Post-transcriptional gene regulation: From genome-wide studies to principles
R. E. Halbeisen, A. Galgano, T. Scherrer, A. P. Gerber
Cell Mol Life Sci. 2008 March; 65(5): 798–813. Published online 2007 November 26. doi: 10.1007/s00018-007-7447-6
PMCID:
PMC2771128
Abstract Full Text PDF–636K
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