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Prediction of trans-antisense transcripts in Arabidopsis thaliana
Huan Wang, Nam-Hai Chua, Xiu-Jie Wang
Genome Biol. 2006; 7(10): R92. Published online 2006 October 13. doi: 10.1186/gb-2006-7-10-r92
PMCID:
PMC1794575
Abstract Full Text PDF–504K Supplementary Material
 Is Cited by the Following 15 Articles in this Archive:
PlantNATsDB: a comprehensive database of plant natural antisense transcripts
Dijun Chen, Chunhui Yuan, Jian Zhang, Zhao Zhang, Lin Bai, Yijun Meng, Ling-Ling Chen, Ming Chen
Nucleic Acids Res. 2012 January; 40(D1): D1187–D1193. Published online 2011 November 3. doi: 10.1093/nar/gkr823
PMCID:
PMC3245084
Abstract Full Text PDF–4.4M
Deep sequencing of small RNAs specifically associated with Arabidopsis AGO1 and AGO4 uncovers new AGO functions
Huan Wang, Xiuren Zhang, Jun Liu, Takatoshi Kiba, Jongchan Woo, Tolulope Ojo, Markus Hafner, Thomas Tuschl, Nam-Hai Chua, Xiu-Jie Wang
Plant J. Author manuscript; available in PMC 2012 January 1.
Published in final edited form as: Plant J. 2011 July; 67(2): 292–304. Published online 2011 May 10. doi: 10.1111/j.1365-313X.2011.04594.x
PMCID:
PMC3135789
Abstract Full Text PDF–3.2M Supplementary Material
Pseudogenes as an alternative source of natural antisense transcripts
Enrique M Muro, Miguel A Andrade-Navarro
BMC Evol Biol. 2010; 10: 338. Published online 2010 November 3. doi: 10.1186/1471-2148-10-338
PMCID:
PMC2984423
Abstract Full Text PDF–1.4M Supplementary Material
Identification of MicroRNAs Involved in Pathogen-Associated Molecular Pattern-Triggered Plant Innate Immunity
Yan Li, QingQing Zhang, Jiangguang Zhang, Liang Wu, Yijun Qi, Jian-Min Zhou
Plant Physiol. 2010 April; 152(4): 2222–2231. Published online 2010 February 17. doi: 10.1104/pp.109.151803
PMCID:
PMC2850012
Abstract Full Text PDF–788K Supplementary Material
Novel long non-protein coding RNAs involved in Arabidopsis differentiation and stress responses
Besma Ben Amor, Sonia Wirth, Francisco Merchan, Philippe Laporte, Yves d’Aubenton-Carafa, Judith Hirsch, Alexis Maizel, Allison Mallory, Antoine Lucas, Jean Marc Deragon, Herve Vaucheret, Claude Thermes, Martin Crespi
Genome Res. 2009 January; 19(1): 57–69. doi: 10.1101/gr.080275.108
PMCID:
PMC2612962
Abstract Full Text PDF–934K
Genome-wide identification and analysis of small RNAs originated from natural antisense transcripts in Oryza sativa
Xuefeng Zhou, Ramanjulu Sunkar, Hailing Jin, Jian-Kang Zhu, Weixiong Zhang
Genome Res. 2009 January; 19(1): 70–78. doi: 10.1101/gr.084806.108
PMCID:
PMC2612963
Abstract Full Text PDF–520K
Evidence for common short natural trans sense-antisense pairing between transcripts from protein coding genes
Ping Wang, Shanye Yin, Zhenguo Zhang, Dedong Xin, Landian Hu, Xiangyin Kong, Laurence D Hurst
Genome Biol. 2008; 9(12): R169. Published online 2008 December 2. doi: 10.1186/gb-2008-9-12-r169
PMCID:
PMC2646273
Abstract Full Text PDF–480K Supplementary Material
Analysis of wheat SAGE tags reveals evidence for widespread antisense transcription
Rebecca L Poole, Gary LA Barker, Kay Werner, Gaia F Biggi, Jane Coghill, J George Gibbings, Simon Berry, Jim M Dunwell, Keith J Edwards
BMC Genomics. 2008; 9: 475. Published online 2008 October 10. doi: 10.1186/1471-2164-9-475
PMCID:
PMC2584110
Abstract Full Text PDF–438K Supplementary Material
Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation
Jiong-Tang Li, Yong Zhang, Lei Kong, Qing-Rong Liu, Liping Wei
Nucleic Acids Res. 2008 September; 36(15): 4833–4844. Published online 2008 September. doi: 10.1093/nar/gkn470
PMCID:
PMC2528163
Abstract Full Text PDF–2.6M Supplementary Material
Bioinformatics in China: A Personal Perspective
Liping Wei, Jun Yu
PLoS Comput Biol. 2008 April; 4(4): e1000020. Published online 2008 April 25. doi: 10.1371/journal.pcbi.1000020
PMCID:
PMC2291564
Full Text PDF–286K
Sorting of Small RNAs into Arabidopsis Argonaute Complexes Is Directed by the 5′ Terminal Nucleotide
Shijun Mi, Tao Cai, Yugang Hu, Yemiao Chen, Emily Hodges, Fangrui Ni, Liang Wu, Shan Li, Huanyu Zhou, Chengzu Long, She Chen, Gregory J. Hannon, Yijun Qi
Cell. Author manuscript; available in PMC 2010 November 15.
Published in final edited form as: Cell. 2008 April 4; 133(1): 116–127. Published online 2008 March 13. doi: 10.1016/j.cell.2008.02.034
PMCID:
PMC2981139
Abstract Full Text PDF–2.2M Supplementary Material
Sugarcane Functional Genomics: Gene Discovery for Agronomic Trait Development
M. Menossi, M. C. Silva-Filho, M. Vincentz, M.-A. Van-Sluys, G. M. Souza
Int J Plant Genomics. 2008; 2008: 458732. Published online 2007 December 16. doi: 10.1155/2008/458732
PMCID:
PMC2216073
Abstract Full Text PDF–571K
antiCODE: a natural sense-antisense transcripts database
Yifei Yin, Yi Zhao, Jie Wang, Changning Liu, Shuguang Chen, Runsheng Chen, Haitao Zhao
BMC Bioinformatics. 2007; 8: 319. Published online 2007 August 30. doi: 10.1186/1471-2105-8-319
PMCID:
PMC1997216
Abstract Full Text PDF–445K
Distinct Expression Patterns of Natural Antisense Transcripts in Arabidopsis
Stefan R. Henz, Jason S. Cumbie, Kristin D. Kasschau, Jan U. Lohmann, James C. Carrington, Detlef Weigel, Markus Schmid
Plant Physiol. 2007 July; 144(3): 1247–1255. doi: 10.1104/pp.107.100396
PMCID:
PMC1914114
Abstract Full Text PDF–794K Supplementary Material
Global Identification and Characterization of Transcriptionally Active Regions in the Rice Genome
Lei Li, Xiangfeng Wang, Rajkumar Sasidharan, Viktor Stolc, Wei Deng, Hang He, Jan Korbel, Xuewei Chen, Waraporn Tongprasit, Pamela Ronald, Runsheng Chen, Mark Gerstein, Xing Wang Deng
PLoS ONE. 2007; 2(3): e294. Published online 2007 March 14. doi: 10.1371/journal.pone.0000294
PMCID:
PMC1808428
Abstract Full Text PDF–731K Supplementary Material
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