My NCBISign In
CellProfiler: image analysis software for identifying and quantifying cell phenotypes
Anne E Carpenter, Thouis R Jones, Michael R Lamprecht, Colin Clarke, In Han Kang, Ola Friman, David A Guertin, Joo Han Chang, Robert A Lindquist, Jason Moffat, Polina Golland, David M Sabatini
Genome Biol. 2006; 7(10): R100. Published online 2006 October 31. doi: 10.1186/gb-2006-7-10-r100
PMCID:
PMC1794559
Abstract Full Text PDF–774K Supplementary Material

Is Cited by the Following 145 Articles in this Archive:

International Network for Comparison of HIV Neutralization Assays: The NeutNet Report II
Leo Heyndrickx, Alan Heath, Enas Sheik-Khalil, Jose Alcami, Vera Bongertz, Marianne Jansson, Mauro Malnati, David Montefiori, Christiane Moog, Lynn Morris, Saladin Osmanov, Victoria Polonis, Meghna Ramaswamy, Quentin Sattentau, Monica Tolazzi, Hanneke Schuitemaker, Betty Willems, Terri Wrin, Eva Maria Fenyö, Gabriella Scarlatti
PLoS One. 2012; 7(5): e36438. Published online 2012 May 9. doi: 10.1371/journal.pone.0036438
PMCID:
PMC3348930
Abstract Full Text PDF–647K Supplementary Material
Protein Signature of Lung Cancer Tissues
Michael R. Mehan, Deborah Ayers, Derek Thirstrup, Wei Xiong, Rachel M. Ostroff, Edward N. Brody, Jeffrey J. Walker, Larry Gold, Thale C. Jarvis, Nebojsa Janjic, Geoffrey S. Baird, Sheri K. Wilcox
PLoS One. 2012; 7(4): e35157. Published online 2012 April 11. doi: 10.1371/journal.pone.0035157
PMCID:
PMC3324437
Abstract Full Text PDF–1.2M Supplementary Material
ATF3 protects against atherosclerosis by suppressing 25-hydroxycholesterol–induced lipid body formation
Elizabeth S. Gold, Stephen A. Ramsey, Mark J. Sartain, Jyrki Selinummi, Irina Podolsky, David J. Rodriguez, Robert L. Moritz, Alan Aderem
J Exp Med. 2012 April 9; 209(4): 807–817. doi: 10.1084/jem.20111202
PMCID:
PMC3328364
Free in PMC on 2012/10/09
The C Terminus of the Large Tegument Protein pUL36 Contains Multiple Capsid Binding Sites That Function Differently during Assembly and Cell Entry of Herpes Simplex Virus
Julia Schipke, Anja Pohlmann, Randi Diestel, Anne Binz, Kathrin Rudolph, Claus-Henning Nagel, Rudolf Bauerfeind, Beate Sodeik
J Virol. 2012 April; 86(7): 3682–3700. doi: 10.1128/JVI.06432-11
PMCID:
PMC3302494
Free in PMC on 2012/10/01
Analysis of gene expression levels in individual bacterial cells without image segmentation
In Hae Kwak, Minjun Son, Stephen J. Hagen
Biochem Biophys Res Commun. Author manuscript; available in PMC 2013 May 11.
Published in final edited form as: Biochem Biophys Res Commun. 2012 May 11; 421(3): 425–430. Published online 2012 April 1. doi: 10.1016/j.bbrc.2012.03.117
PMCID:
PMC3351551
Free in PMC on 2013/05/11
A Chemical Screen Probing the Relationship between Mitochondrial Content and Cell Size
Toshimori Kitami, David J. Logan, Joseph Negri, Thomas Hasaka, Nicola J. Tolliday, Anne E. Carpenter, Bruce M. Spiegelman, Vamsi K. Mootha
PLoS One. 2012; 7(3): e33755. Published online 2012 March 29. doi: 10.1371/journal.pone.0033755
PMCID:
PMC3315575
Abstract Full Text PDF–1.7M Supplementary Material
Multi-Parametric Analysis and Modeling of Relationships between Mitochondrial Morphology and Apoptosis
Yara Reis, Marti Bernardo-Faura, Daniela Richter, Thomas Wolf, Benedikt Brors, Anne Hamacher-Brady, Roland Eils, Nathan R. Brady
PLoS One. 2012; 7(1): e28694. Published online 2012 January 17. doi: 10.1371/journal.pone.0028694
PMCID:
PMC3260148
Abstract Full Text PDF–2.1M Supplementary Material
The Apoplastic Oxidative Burst Peroxidase in Arabidopsis Is a Major Component of Pattern-Triggered Immunity
Arsalan Daudi, Zhenyu Cheng, Jose A. O’Brien, Nicole Mammarella, Safina Khan, Frederick M. Ausubel, G. Paul Bolwell
Plant Cell. 2012 January; 24(1): 275–287. Published online 2012 January 13. doi: 10.1105/tpc.111.093039
PMCID:
PMC3289579
Abstract Full Text PDF–719K
Soluble CD44 Interacts with Intermediate Filament Protein Vimentin on Endothelial Cell Surface
Taavi Päll, Anne Pink, Lagle Kasak, Marina Turkina, Wally Anderson, Andres Valkna, Priit Kogerman
PLoS One. 2011; 6(12): e29305. Published online 2011 December 21. doi: 10.1371/journal.pone.0029305
PMCID:
PMC3244446
Abstract Full Text PDF–1.4M Supplementary Material
Extracting Fluorescent Reporter Time Courses of Cell Lineages from High-Throughput Microscopy at Low Temporal Resolution
Mike J. Downey, Danuta M. Jeziorska, Sascha Ott, T. Katherine Tamai, Georgy Koentges, Keith W. Vance, Till Bretschneider
PLoS One. 2011; 6(12): e27886. Published online 2011 December 15. doi: 10.1371/journal.pone.0027886
PMCID:
PMC3240619
Abstract Full Text PDF–1.5M Supplementary Material
Identification of RhoGAP22 as an Akt-Dependent Regulator of Cell Motility in Response to Insulin
Alexander F. Rowland, Mark Larance, William E. Hughes, David E. James
Mol Cell Biol. 2011 December; 31(23): 4789–4800. doi: 10.1128/MCB.05583-11
PMCID:
PMC3232915
Free in PMC on 2012/06/01
Automated image analysis identifies signaling pathways regulating distinct signatures of cardiac myocyte hypertrophy
Gregory T. Bass, Karen A. Ryall, Ashwin Katikapalli, Brooks E. Taylor, Stephen T. Dang, Scott T. Acton, Jeffrey J. Saucerman
J Mol Cell Cardiol. Author manuscript; available in PMC 2013 May 1.
Published in final edited form as: J Mol Cell Cardiol. 2012 May; 52(5): 923–930. Published online 2011 December 1. doi: 10.1016/j.yjmcc.2011.11.009
PMCID:
PMC3299901
Free in PMC on 2013/05/01
Data Ontology and an Information System Realization for Web-Based Management of Image Measurements
Dimiter Prodanov
Front Neuroinform. 2011; 5: 25. Published online 2011 November 25. doi: 10.3389/fninf.2011.00025
PMCID:
PMC3254173
Abstract Full Text PDF–2.0M
CellAnimation: an open source MATLAB framework for microscopy assays
Walter Georgescu, John P. Wikswo, Vito Quaranta
Bioinformatics. 2012 January 1; 28(1): 138–139. Published online 2011 November 24. doi: 10.1093/bioinformatics/btr633
PMCID:
PMC3244774
Free in PMC on 2013/01/01
Automated Analysis of Time-Lapse Imaging of Nuclear Translocation by Retrospective Strategy and Its Application to STAT1 in HeLa Cells
Fujun Han, Peizhou Liang, Feifei Wang, Lingyun Zeng, Biliang Zhang
PLoS One. 2011; 6(11): e27454. Published online 2011 November 18. doi: 10.1371/journal.pone.0027454
PMCID:
PMC3220678
Abstract Full Text PDF–1.2M Supplementary Material
Cell Motility Dynamics: A Novel Segmentation Algorithm to Quantify Multi-Cellular Bright Field Microscopy Images
Assaf Zaritsky, Sari Natan, Judith Horev, Inbal Hecht, Lior Wolf, Eshel Ben-Jacob, Ilan Tsarfaty
PLoS One. 2011; 6(11): e27593. Published online 2011 November 9. doi: 10.1371/journal.pone.0027593
PMCID:
PMC3212570
Abstract Full Text PDF–1.7M Supplementary Material
Phenotypic profiling of the human genome reveals gene products involved in plasma membrane targeting of SRC kinases
Julia Ritzerfeld, Steffen Remmele, Tao Wang, Koen Temmerman, Britta Brügger, Sabine Wegehingel, Stella Tournaviti, Jeroen R.P.M. Strating, Felix T. Wieland, Beate Neumann, Jan Ellenberg, Chris Lawerenz, Jürgen Hesser, Holger Erfle, Rainer Pepperkok, Walter Nickel
Genome Res. 2011 November; 21(11): 1955–1968. doi: 10.1101/gr.116087.110
PMCID:
PMC3205579
Abstract Full Text PDF–4.2M
CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses
Akiko Hatano, Hirokazu Chiba, Harry Amri Moesa, Takeaki Taniguchi, Satoshi Nagaie, Koji Yamanegi, Takako Takai-Igarashi, Hiroshi Tanaka, Wataru Fujibuchi
Database (Oxford) 2011; 2011: bar046. Published online 2011 October 29. doi: 10.1093/database/bar046
PMCID:
PMC3204613
Abstract Full Text PDF–1.2M
Altered Modes of Stem Cell Division Drive Adaptive Intestinal Growth
Lucy Erin O'Brien, Sarah S. Soliman, Xinghua Li, David Bilder
Cell. Author manuscript; available in PMC 2012 October 28.
Published in final edited form as: Cell. 2011 October 28; 147(3): 603–614. doi: 10.1016/j.cell.2011.08.048
PMCID:
PMC3246009
Free in PMC on 2012/10/28
Nitric oxide-induced calcium release via ryanodine receptors regulates neuronal function
Sho Kakizawa, Toshiko Yamazawa, Yili Chen, Akihiro Ito, Takashi Murayama, Hideto Oyamada, Nagomi Kurebayashi, Osamu Sato, Masahiko Watanabe, Nozomu Mori, Katsuji Oguchi, Takashi Sakurai, Hiroshi Takeshima, Nobuhito Saito, Masamitsu Iino
EMBO J. 2012 January 18; 31(2): 417–428. Published online 2011 October 28. doi: 10.1038/emboj.2011.386
PMCID:
PMC3261553
Free in PMC on 2013/01/18
Histone Deacetylase 8 Is Required for Centrosome Cohesion and Influenza A Virus Entry
Yohei Yamauchi, Heithem Boukari, Indranil Banerjee, Ivo F. Sbalzarini, Peter Horvath, Ari Helenius
PLoS Pathog. 2011 October; 7(10): e1002316. Published online 2011 October 27. doi: 10.1371/journal.ppat.1002316
PMCID:
PMC3203190
Abstract Full Text PDF–2.9M Supplementary Material
Measurement of TLR-Induced Macrophage Spreading by Automated Image Analysis: Differential Role of Myd88 and MAPK in Early and Late Responses
Jens Wenzel, Christian Held, Ralf Palmisano, Stefan Teufel, Jean-Pierre David, Thomas Wittenberg, Roland Lang
Front Physiol. 2011; 2: 71. Published online 2011 October 18. doi: 10.3389/fphys.2011.00071
PMCID:
PMC3198511
Abstract Full Text PDF–2.0M
Nuclear protein accumulation in cellular senescence and organismal aging revealed with a novel single-cell resolution fluorescence microscopy assay
Marco De Cecco, Jessie Jeyapalan, Xiaoai Zhao, Mimi Tamamori-Adachi, John M. Sedivy
Aging (Albany NY) 2011 October; 3(10): 955–967. Published online 2011 October 16.
PMCID:
PMC3229972
Abstract Full Text PDF–1.1M Supplementary Material
A new regulatory function of the region proximal to the RGG box in the Fragile X mental retardation protein
Ernest Blackwell, Stephanie Ceman
J Cell Sci. 2011 September 15; 124(18): 3060–3065. doi: 10.1242/jcs.086751
PMCID:
PMC3172185
Free in PMC on 2012/09/15
Pyruvate Kinase Triggers a Metabolic Feedback Loop that Controls Redox Metabolism in Respiring Cells
Nana-Maria Grüning, Mark Rinnerthaler, Katharina Bluemlein, Michael Mülleder, Mirjam M.C. Wamelink, Hans Lehrach, Cornelis Jakobs, Michael Breitenbach, Markus Ralser
Cell Metab. 2011 September 7; 14(3): 415–427. doi: 10.1016/j.cmet.2011.06.017
PMCID:
PMC3202625
Abstract Full Text Supplementary Material
Intradermal Indocyanine Green for In Vivo Fluorescence Laser Scanning Microscopy of Human Skin: A Pilot Study
Constanze Jonak, Hans Skvara, Rainer Kunstfeld, Franz Trautinger, Johannes A. Schmid
PLoS One. 2011; 6(8): e23972. Published online 2011 August 31. doi: 10.1371/journal.pone.0023972
PMCID:
PMC3164142
Abstract Full Text PDF–964K Supplementary Material
Generation of monospecific antibodies based on affinity capture of polyclonal antibodies
Barbara Hjelm, Björn Forsström, Ulrika Igel, Henrik Johannesson, Charlotte Stadler, Emma Lundberg, Fredrik Ponten, Anna Sjöberg, Johan Rockberg, Jochen M Schwenk, Peter Nilsson, Christine Johansson, Mathias Uhlén
Protein Sci. 2011 November; 20(11): 1824–1835. Published online 2011 August 24. doi: 10.1002/pro.716
PMCID:
PMC3267947
Free in PMC on 2012/11/01
High-Throughput Screening of Australian Marine Organism Extracts for Bioactive Molecules Affecting the Cellular Storage of Neutral Lipids
James Rae, Frank Fontaine, Angela A. Salim, Harriet P. Lo, Robert J. Capon, Robert G. Parton, Sally Martin
PLoS One. 2011; 6(8): e22868. Published online 2011 August 8. doi: 10.1371/journal.pone.0022868
PMCID:
PMC3152550
Abstract Full Text PDF–3.5M Supplementary Material
mTOR complex 1 regulates lipin 1 localization to control the SREBP pathway
Timothy R. Peterson, Shomit S. Sengupta, Thurl E. Harris, Anne E. Carmack, Seong A. Kang, Eric Balderas, David A. Guertin, Katherine L. Madden, Anne E. Carpenter, Brian N. Finck, David M. Sabatini
Cell. Author manuscript; available in PMC 2012 August 5.
Published in final edited form as: Cell. 2011 August 5; 146(3): 408–420. doi: 10.1016/j.cell.2011.06.034
PMCID:
PMC3336367
Free in PMC on 2012/08/05
Emergence of potent inhibitors of metastasis in lung cancer via syntheses based on migrastatin
Nicolas Lecomte, Jon T. Njardarson, Pavel Nagorny, Guangli Yang, Robert Downey, Ouathek Ouerfelli, Malcolm A. S. Moore, Samuel J. Danishefsky
Proc Natl Acad Sci U S A. 2011 September 13; 108(37): 15074-15078. Published online 2011 August 1. doi: 10.1073/pnas.1015247108
PMCID:
PMC3174672
Abstract Full Text PDF–1.0M Supplementary Material
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