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CellProfiler: image analysis software for identifying and quantifying cell phenotypes
Anne E Carpenter, Thouis R Jones, Michael R Lamprecht, Colin Clarke, In Han Kang, Ola Friman, David A Guertin, Joo Han Chang, Robert A Lindquist, Jason Moffat, Polina Golland, David M Sabatini
Genome Biol. 2006; 7(10): R100. Published online 2006 October 31. doi: 10.1186/gb-2006-7-10-r100
PMCID:
PMC1794559
Abstract Full Text PDF–774K Supplementary Material
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 Is Cited by the Following 120 Articles in this Archive:
Multi-Parametric Analysis and Modeling of Relationships between Mitochondrial Morphology and Apoptosis
Yara Reis, Marti Bernardo-Faura, Daniela Richter, Thomas Wolf, Benedikt Brors, Anne Hamacher-Brady, Roland Eils, Nathan R. Brady
PLoS One. 2012; 7(1): e28694. Published online 2012 January 17. doi: 10.1371/journal.pone.0028694
PMCID:
PMC3260148
Abstract Full Text PDF–2.1M Supplementary Material
Soluble CD44 Interacts with Intermediate Filament Protein Vimentin on Endothelial Cell Surface
Taavi Päll, Anne Pink, Lagle Kasak, Marina Turkina, Wally Anderson, Andres Valkna, Priit Kogerman
PLoS One. 2011; 6(12): e29305. Published online 2011 December 21. doi: 10.1371/journal.pone.0029305
PMCID:
PMC3244446
Abstract Full Text PDF–1.4M Supplementary Material
Extracting Fluorescent Reporter Time Courses of Cell Lineages from High-Throughput Microscopy at Low Temporal Resolution
Mike J. Downey, Danuta M. Jeziorska, Sascha Ott, T. Katherine Tamai, Georgy Koentges, Keith W. Vance, Till Bretschneider
PLoS One. 2011; 6(12): e27886. Published online 2011 December 15. doi: 10.1371/journal.pone.0027886
PMCID:
PMC3240619
Abstract Full Text PDF–1.5M Supplementary Material
Data Ontology and an Information System Realization for Web-Based Management of Image Measurements
Dimiter Prodanov
Front Neuroinform. 2011; 5: 25. Published online 2011 November 25. doi: 10.3389/fninf.2011.00025
PMCID:
PMC3254173
Abstract Full Text PDF–2.0M
Automated Analysis of Time-Lapse Imaging of Nuclear Translocation by Retrospective Strategy and Its Application to STAT1 in HeLa Cells
Fujun Han, Peizhou Liang, Feifei Wang, Lingyun Zeng, Biliang Zhang
PLoS One. 2011; 6(11): e27454. Published online 2011 November 18. doi: 10.1371/journal.pone.0027454
PMCID:
PMC3220678
Abstract Full Text PDF–1.2M Supplementary Material
Cell Motility Dynamics: A Novel Segmentation Algorithm to Quantify Multi-Cellular Bright Field Microscopy Images
Assaf Zaritsky, Sari Natan, Judith Horev, Inbal Hecht, Lior Wolf, Eshel Ben-Jacob, Ilan Tsarfaty
PLoS One. 2011; 6(11): e27593. Published online 2011 November 9. doi: 10.1371/journal.pone.0027593
PMCID:
PMC3212570
Abstract Full Text PDF–1.7M Supplementary Material
CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses
Akiko Hatano, Hirokazu Chiba, Harry Amri Moesa, Takeaki Taniguchi, Satoshi Nagaie, Koji Yamanegi, Takako Takai-Igarashi, Hiroshi Tanaka, Wataru Fujibuchi
Database (Oxford) 2011; 2011: bar046. Published online 2011 October 29. doi: 10.1093/database/bar046
PMCID:
PMC3204613
Abstract Full Text PDF–1.2M
Histone Deacetylase 8 Is Required for Centrosome Cohesion and Influenza A Virus Entry
Yohei Yamauchi, Heithem Boukari, Indranil Banerjee, Ivo F. Sbalzarini, Peter Horvath, Ari Helenius
PLoS Pathog. 2011 October; 7(10): e1002316. Published online 2011 October 27. doi: 10.1371/journal.ppat.1002316
PMCID:
PMC3203190
Abstract Full Text PDF–2.9M Supplementary Material
Measurement of TLR-Induced Macrophage Spreading by Automated Image Analysis: Differential Role of Myd88 and MAPK in Early and Late Responses
Jens Wenzel, Christian Held, Ralf Palmisano, Stefan Teufel, Jean-Pierre David, Thomas Wittenberg, Roland Lang
Front Physiol. 2011; 2: 71. Published online 2011 October 18. doi: 10.3389/fphys.2011.00071
PMCID:
PMC3198511
Abstract Full Text PDF–2.0M
Nuclear protein accumulation in cellular senescence and organismal aging revealed with a novel single-cell resolution fluorescence microscopy assay
Marco De Cecco, Jessie Jeyapalan, Xiaoai Zhao, Mimi Tamamori-Adachi, John M. Sedivy
Aging (Albany NY) 2011 October; 3(10): 955–967. Published online 2011 October 16.
PMCID:
PMC3229972
Abstract Full Text PDF–1.1M Supplementary Material
Pyruvate Kinase Triggers a Metabolic Feedback Loop that Controls Redox Metabolism in Respiring Cells
Nana-Maria Grüning, Mark Rinnerthaler, Katharina Bluemlein, Michael Mülleder, Mirjam M.C. Wamelink, Hans Lehrach, Cornelis Jakobs, Michael Breitenbach, Markus Ralser
Cell Metab. 2011 September 7; 14(3): 415–427. doi: 10.1016/j.cmet.2011.06.017
PMCID:
PMC3202625
Abstract Full Text PDF–2.1M Supplementary Material
Intradermal Indocyanine Green for In Vivo Fluorescence Laser Scanning Microscopy of Human Skin: A Pilot Study
Constanze Jonak, Hans Skvara, Rainer Kunstfeld, Franz Trautinger, Johannes A. Schmid
PLoS One. 2011; 6(8): e23972. Published online 2011 August 31. doi: 10.1371/journal.pone.0023972
PMCID:
PMC3164142
Abstract Full Text PDF–964K Supplementary Material
High-Throughput Screening of Australian Marine Organism Extracts for Bioactive Molecules Affecting the Cellular Storage of Neutral Lipids
James Rae, Frank Fontaine, Angela A. Salim, Harriet P. Lo, Robert J. Capon, Robert G. Parton, Sally Martin
PLoS One. 2011; 6(8): e22868. Published online 2011 August 8. doi: 10.1371/journal.pone.0022868
PMCID:
PMC3152550
Abstract Full Text PDF–3.5M Supplementary Material
Condition-Dependent Cell Volume and Concentration of Escherichia coli to Facilitate Data Conversion for Systems Biology Modeling
Benjamin Volkmer, Matthias Heinemann
PLoS One. 2011; 6(7): e23126. Published online 2011 July 29. doi: 10.1371/journal.pone.0023126
PMCID:
PMC3146540
Abstract Full Text PDF–221K
Cathepsin K deficiency in mice induces structural and metabolic changes in the central nervous system that are associated with learning and memory deficits
Stephanie Dauth, Ruxandra F Sîrbulescu, Silvia Jordans, Maren Rehders, Linda Avena, Julia Oswald, Alexander Lerchl, Paul Saftig, Klaudia Brix
BMC Neurosci. 2011; 12: 74. Published online 2011 July 27. doi: 10.1186/1471-2202-12-74
PMCID:
PMC3199875
Abstract Full Text PDF–7.1M Supplementary Material
BioIMAX: A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data
Christian Loyek, Nasir M Rajpoot, Michael Khan, Tim W Nattkemper
BMC Bioinformatics. 2011; 12: 297. Published online 2011 July 21. doi: 10.1186/1471-2105-12-297
PMCID:
PMC3161928
Abstract Full Text PDF–2.1M Supplementary Material
A generalized model for multi-marker analysis of cell cycle progression in synchrony experiments
Michael B. Mayhew, Joshua W. Robinson, Boyoun Jung, Steven B. Haase, Alexander J. Hartemink
Bioinformatics. 2011 July 1; 27(13): i295–i303. Published online 2011 June 14. doi: 10.1093/bioinformatics/btr244
PMCID:
PMC3117372
Abstract Full Text
Gebiss: an ImageJ plugin for the specification of ground truth and the performance evaluation of 3D segmentation algorithms
Janos Kriston-Vizi, Ng Wee Thong, Cheok Leong Poh, Kwo Chia Yee, Joan Sim Poh Ling, Rachel Kraut, Martin Wasser
BMC Bioinformatics. 2011; 12: 232. Published online 2011 June 13. doi: 10.1186/1471-2105-12-232
PMCID:
PMC3225128
Abstract Full Text PDF–4.8M Supplementary Material
Omeprazole Inhibits Proliferation and Modulates Autophagy in Pancreatic Cancer Cells
Andrej Udelnow, Andreas Kreyes, Stefan Ellinger, Katharina Landfester, Paul Walther, Thomas Klapperstueck, Johannes Wohlrab, Doris Henne-Bruns, Uwe Knippschild, Peter Würl
PLoS One. 2011; 6(5): e20143. Published online 2011 May 24. doi: 10.1371/journal.pone.0020143
PMCID:
PMC3101238
Abstract Full Text PDF–1.9M
RhoA and RhoC have distinct roles in migration and invasion by acting through different targets
Francisco M. Vega, Gilbert Fruhwirth, Tony Ng, Anne J. Ridley
J Cell Biol. 2011 May 16; 193(4): 655–665. doi: 10.1083/jcb.201011038
PMCID:
PMC3166870
Abstract Full Text PDF–2.8M Supplementary Material
Utilization of I-domain of LFA-1 to Target Drug and Marker Molecules to Leukocytes
Prakash Manikwar, Bimo A. Tejo, Heather Shinogle, David S. Moore, Tahl Zimmerman, Francisco Blanco, Teruna J. Siahaan
Theranostics. 2011; 1: 277–289. Published online 2011 May 10.
PMCID:
PMC3100608
Abstract Full Text PDF–1.0M
A PiggyBac-Based Recessive Screening Method to Identify Pluripotency Regulators
Ge Guo, Yue Huang, Peter Humphreys, Xiaozhong Wang, Austin Smith
PLoS One. 2011; 6(4): e18189. Published online 2011 April 18. doi: 10.1371/journal.pone.0018189
PMCID:
PMC3078921
Abstract Full Text PDF–1.3M
A new bio-nanochip sensor aids oral cancer detection
John McDevitt, Shannon E. Weigum, Pierre N. Floriano, Nicolaos Christodoulides, Spencer W. Redding, Chih-Ko Yeh, Stan McGuff, Nadarajah Vigneswaran, Martin H. Thornhill, Michelle D. Williams
SPIE Newsroom. Author manuscript; available in PMC 2011 August 2.
Published in final edited form as: SPIE Newsroom. 2011 March 28: 003547. doi: 10.1117/2.1201102.003547
PMCID:
PMC3148937
Abstract Full Text PDF–177K
RNAi screen of Salmonella invasion shows role of COPI in membrane targeting of cholesterol and Cdc42
Benjamin Misselwitz, Sabrina Dilling, Pascale Vonaesch, Raphael Sacher, Berend Snijder, Markus Schlumberger, Samuel Rout, Manuel Stark, Christian von Mering, Lucas Pelkmans, Wolf-Dietrich Hardt
Mol Syst Biol. 2011; 7: 474. Published online 2011 March 15. doi: 10.1038/msb.2011.7
PMCID:
PMC3094068
Abstract Full Text PDF–2.5M Supplementary Material
Genome-scale RNAi on living-cell microarrays identifies novel regulators of Drosophila melanogaster TORC1–S6K pathway signaling
Robert A. Lindquist, Kathleen A. Ottina, Douglas B. Wheeler, Peggy P. Hsu, Carson C. Thoreen, David A. Guertin, Siraj M. Ali, Shomit Sengupta, Yoav D. Shaul, Michael R. Lamprecht, Katherine L. Madden, Adam R. Papallo, Thouis R. Jones, David M. Sabatini, Anne E. Carpenter
Genome Res. 2011 March; 21(3): 433–446. doi: 10.1101/gr.111492.110
PMCID:
PMC3044857
Abstract Full Text PDF–1.9M
Human tumors instigate granulin-expressing hematopoietic cells that promote malignancy by activating stromal fibroblasts in mice
Moshe Elkabets, Ann M. Gifford, Christina Scheel, Bjorn Nilsson, Ferenc Reinhardt, Mark-Anthony Bray, Anne E. Carpenter, Karin Jirström, Kristina Magnusson, Benjamin L. Ebert, Fredrik Pontén, Robert A. Weinberg, Sandra S. McAllister
J Clin Invest. 2011 February 1; 121(2): 784–799. Published online 2011 January 25. doi: 10.1172/JCI43757
PMCID:
PMC3026724
Abstract Full Text PDF–1.5M Supplementary Material
Parallel Imaging Microfluidic Cytometer
Daniel J. Ehrlich, Brian K. McKenna, James G. Evans, Anna C. Belkina, Gerald V. Denis, David Sherr, Man Ching Cheung
Methods Cell Biol. Author manuscript; available in PMC 2012 January 1.
Published in final edited form as: Methods Cell Biol. 2011; 102: 49–75. doi: 10.1016/B978-0-12-374912-3.00003-1
PMCID:
PMC3139515
Abstract Full Text PDF–6.8M
Folding, Quality Control, and Secretion of Pancreatic Ribonuclease in Live Cells
Roger Geiger, Matthias Gautschi, Friederike Thor, Arnold Hayer, Ari Helenius
J Biol Chem. 2011 February 18; 286(7): 5813–5822. Published online 2010 December 14. doi: 10.1074/jbc.M110.171694
PMCID:
PMC3037694
Abstract Full Text Supplementary Material
Formin follows function: a muscle-specific isoform of FHOD3 is regulated by CK2 phosphorylation and promotes myofibril maintenance
Thomas Iskratsch, Stephan Lange, Joseph Dwyer, Ay Lin Kho, Cris dos Remedios, Elisabeth Ehler
J Cell Biol. 2010 December 13; 191(6): 1159–1172. doi: 10.1083/jcb.201005060
PMCID:
PMC3002041
Abstract Full Text PDF–3.3M Supplementary Material
Direct measurement of oxygen consumption rates from attached and unattached cells in a reversibly sealed, diffusionally isolated sample chamber
Timothy J. Strovas, Sarah C. McQuaide, Judy B. Anderson, Vivek Nandakumar, Marina G. Kalyuzhnaya, Lloyd W. Burgess, Mark R. Holl, Deirdre R. Meldrum, Mary E. Lidstrom
Adv Biosci Biotechnol. Author manuscript; available in PMC 2011 May 3.
Published in final edited form as: Adv Biosci Biotechnol. 2010 December 1; 5(5): 398–408.
PMCID:
PMC3086294
Abstract Full Text PDF–673K
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