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Pathway and gene-set activation measurement from mRNA expression data: the tissue distribution of human pathways
David M Levine, David R Haynor, John C Castle, Sergey B Stepaniants, Matteo Pellegrini, Mao Mao, Jason M Johnson
Genome Biol. 2006; 7(10): R93. Published online 2006 October 17. doi: 10.1186/gb-2006-7-10-r93
PMCID:
PMC1794557
Abstract Full Text PDF–1.3M Supplementary Material
 Is Cited by the Following 10 Articles in this Archive:
Expression cartography of human tissues using self organizing maps
Henry Wirth, Markus Löffler, Martin von Bergen, Hans Binder
BMC Bioinformatics. 2011; 12: 306. Published online 2011 July 27. doi: 10.1186/1471-2105-12-306
PMCID:
PMC3161046
Abstract Full Text PDF–7.9M Supplementary Material
Circadian signatures in rat liver: from gene expression to pathways
Meric A Ovacik, Siddharth Sukumaran, Richard R Almon, Debra C DuBois, William J Jusko, Ioannis P Androulakis
BMC Bioinformatics. 2010; 11: 540. Published online 2010 November 1. doi: 10.1186/1471-2105-11-540
PMCID:
PMC2990769
Abstract Full Text PDF–4.0M Supplementary Material
Associating Genes and Protein Complexes with Disease via Network Propagation
Oron Vanunu, Oded Magger, Eytan Ruppin, Tomer Shlomi, Roded Sharan
PLoS Comput Biol. 2010 January; 6(1): e1000641. Published online 2010 January 15. doi: 10.1371/journal.pcbi.1000641
PMCID:
PMC2797085
Abstract Full Text PDF–406K Supplementary Material
Knowledge based identification of essential signaling from genome-scale siRNA experiments
Armand Bankhead, III, Iliana Sach, Chester Ni, Nolwenn LeMeur, Mark Kruger, Marc Ferrer, Robert Gentleman, Carol Rohl
BMC Syst Biol. 2009; 3: 80. Published online 2009 August 5. doi: 10.1186/1752-0509-3-80
PMCID:
PMC2731733
Abstract Full Text PDF–828K
An assessment of false discovery rates and statistical significance in label-free quantitative proteomics with combined filters
Qingbo Li, Bryan AP Roxas
BMC Bioinformatics. 2009; 10: 43. Published online 2009 February 2. doi: 10.1186/1471-2105-10-43
PMCID:
PMC2645366
Abstract Full Text PDF–1.7M Supplementary Material
Gene set analyses for interpreting microarray experiments on prokaryotic organisms
Nathan L Tintle, Aaron A Best, Matthew DeJongh, Dirk Van Bruggen, Fred Heffron, Steffen Porwollik, Ronald C Taylor
BMC Bioinformatics. 2008; 9: 469. Published online 2008 November 5. doi: 10.1186/1471-2105-9-469
PMCID:
PMC2587482
Abstract Full Text PDF–356K Supplementary Material
Testing gene set enrichment for subset of genes: Sub-GSE
Xiting Yan, Fengzhu Sun
BMC Bioinformatics. 2008; 9: 362. Published online 2008 September 2. doi: 10.1186/1471-2105-9-362
PMCID:
PMC2543030
Abstract Full Text PDF–502K Supplementary Material
Characterization of a newly developed chicken 44K Agilent microarray
Xianyao Li, Hsin-I Chiang, James Zhu, Scot E Dowd, Huaijun Zhou
BMC Genomics. 2008; 9: 60. Published online 2008 January 31. doi: 10.1186/1471-2164-9-60
PMCID:
PMC2262898
Abstract Full Text PDF–1.4M Supplementary Material
Defective signal transduction in B lymphocytes lacking presenilin proteins
Tomohito Yagi, Cosmas Giallourakis, Subhasis Mohanty, Christina Scheidig, Jie Shen, Hui Zheng, Ramnik J. Xavier, Albert C. Shaw
Proc Natl Acad Sci U S A. 2008 January 22; 105(3): 979–984. Published online 2008 January 14. doi: 10.1073/pnas.0707755105
PMCID:
PMC2242696
Abstract Full Text PDF–1.0M Supplementary Material
Elucidating the Altered Transcriptional Programs in Breast Cancer using Independent Component Analysis
Andrew E Teschendorff, Michel Journée, Pierre A Absil, Rodolphe Sepulchre, Carlos Caldas
PLoS Comput Biol. 2007 August; 3(8): e161. Prepublished online 2007 June 29. Published online 2007 August 17. doi: 10.1371/journal.pcbi.0030161
PMCID:
PMC1950343
Abstract Full Text PDF–919K Supplementary Material
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