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Multiple effects govern endogenous retrovirus survival patterns in human gene introns
Louie N van de Lagemaat, Patrik Medstrand, Dixie L Mager
Genome Biol. 2006; 7(9): R86. Published online 2006 September 27. doi: 10.1186/gb-2006-7-9-r86
PMCID:
PMC1794541
Abstract Full Text PDF–375K Supplementary Material
 Is Cited by the Following 19 Articles in this Archive:
Gene Properties and Chromatin State Influence the Accumulation of Transposable Elements in Genes
Ying Zhang, Dixie L. Mager
PLoS One. 2012; 7(1): e30158. Published online 2012 January 17. doi: 10.1371/journal.pone.0030158
PMCID:
PMC3260225
Abstract Full Text PDF–614K Supplementary Material
Identification, characterization, and comparative genomic distribution of the HERV-K (HML-2) group of human endogenous retroviruses
Ravi P Subramanian, Julia H Wildschutte, Crystal Russo, John M Coffin
Retrovirology. 2011; 8: 90. Published online 2011 November 8. doi: 10.1186/1742-4690-8-90
PMCID:
PMC3228705
Abstract Full Text PDF–710K Supplementary Material
The First Sequenced Carnivore Genome Shows Complex Host-Endogenous Retrovirus Relationships
Álvaro Martínez Barrio, Marie Ekerljung, Patric Jern, Farid Benachenhou, Göran O. Sperber, Erik Bongcam-Rudloff, Jonas Blomberg, Göran Andersson
PLoS One. 2011; 6(5): e19832. Published online 2011 May 12. doi: 10.1371/journal.pone.0019832
PMCID:
PMC3093408
Abstract Full Text PDF–1.2M Supplementary Material
Distributions of Transposable Elements Reveal Hazardous Zones in Mammalian Introns
Ying Zhang, Mark T. Romanish, Dixie L. Mager
PLoS Comput Biol. 2011 May; 7(5): e1002046. Published online 2011 May 5. doi: 10.1371/journal.pcbi.1002046
PMCID:
PMC3088655
Abstract Full Text PDF–1.0M Supplementary Material
A systematic evaluation of expression of HERV-W elements; influence of genomic context, viral structure and orientation
Fang Li, Christoffer Nellåker, Robert H Yolken, Håkan Karlsson
BMC Genomics. 2011; 12: 22. Published online 2011 January 12. doi: 10.1186/1471-2164-12-22
PMCID:
PMC3031232
Abstract Full Text PDF–881K Supplementary Material
SVA retrotransposons: Evolution and genetic instability
Dustin C. Hancks, Haig Kazazian, Jr.
Semin Cancer Biol. Author manuscript; available in PMC 2011 August 1.
Published in final edited form as: Semin Cancer Biol. 2010 August; 20(4): 234–245. Published online 2010 April 21. doi: 10.1016/j.semcancer.2010.04.001
PMCID:
PMC2945828
Abstract Full Text PDF–1.0M
Large-scale transcriptome data reveals transcriptional activity of fission yeast LTR retrotransposons
Tobias Mourier, Eske Willerslev
BMC Genomics. 2010; 11: 167. Published online 2010 March 12. doi: 10.1186/1471-2164-11-167
PMCID:
PMC2848245
Abstract Full Text PDF–1.7M Supplementary Material
Large-scale discovery of insertion hotspots and preferential integration sites of human transposed elements
Asaf Levy, Schraga Schwartz, Gil Ast
Nucleic Acids Res. 2010 March; 38(5): 1515–1530. Published online 2010 March. doi: 10.1093/nar/gkp1134
PMCID:
PMC2836564
Abstract Full Text PDF–4.6M Supplementary Material
Extensive DRB region diversity in cynomolgus macaques: recombination as a driving force
Gaby G. M. Doxiadis, Nanine de Groot, Natasja G. de Groot, Gabriëlle Rotmans, Annemiek J. M. de Vos-Rouweler, Ronald E. Bontrop
Immunogenetics. 2010 March; 62(3): 137–147. Published online 2010 February 4. doi: 10.1007/s00251-010-0422-7
PMCID:
PMC2827794
Abstract Full Text PDF–225K Supplementary Material
Trans-species polymorphism, HLA-disease associations and the evolution of the MHC
Cock van Oosterhout
Commun Integr Biol. 2009 Sep-Oct; 2(5): 408–410.
PMCID:
PMC2775235
Abstract Full Text PDF–93K
The role of transposable elements in the regulation of IFN-λ1 gene expression
Scott J. P. Thomson, Fui G. Goh, Helen Banks, Thomas Krausgruber, Sergei V. Kotenko, Brian M. J. Foxwell, Irina A. Udalova
Proc Natl Acad Sci U S A. 2009 July 14; 106(28): 11564–11569. Published online 2009 July 1. doi: 10.1073/pnas.0904477106
PMCID:
PMC2710658
Abstract Full Text PDF–395K Supplementary Material
Human-Specific Modulation of Transcriptional Activity Provided by Endogenous Retroviral Insertions
Elena Gogvadze, Elena Stukacheva, Anton Buzdin, Eugene Sverdlov
J Virol. 2009 June; 83(12): 6098–6105. Published online 2009 April 1. doi: 10.1128/JVI.00123-09
PMCID:
PMC2687385
Abstract Full Text PDF–701K Supplementary Material
Integration target site selection by a resurrected human endogenous retrovirus
Troy Brady, Young Nam Lee, Keshet Ronen, Nirav Malani, Charles C. Berry, Paul D. Bieniasz, Frederic D. Bushman
Genes Dev. 2009 March 1; 23(5): 633–642. doi: 10.1101/gad.1762309
PMCID:
PMC2658518
Abstract Full Text PDF–663K
Trans-natural antisense transcripts including noncoding RNAs in 10 species: implications for expression regulation
Jiong-Tang Li, Yong Zhang, Lei Kong, Qing-Rong Liu, Liping Wei
Nucleic Acids Res. 2008 September; 36(15): 4833–4844. Published online 2008 September. doi: 10.1093/nar/gkn470
PMCID:
PMC2528163
Abstract Full Text PDF–2.6M Supplementary Material
Impact of Endogenous Intronic Retroviruses on Major Histocompatibility Complex Class II Diversity and Stability
Gaby G. M. Doxiadis, Nanine de Groot, Ronald E. Bontrop
J Virol. 2008 July; 82(13): 6667–6677. Published online 2008 April 30. doi: 10.1128/JVI.00097-08
PMCID:
PMC2447082
Abstract Full Text PDF–727K Supplementary Material
Genome-Wide Assessments Reveal Extremely High Levels of Polymorphism of Two Active Families of Mouse Endogenous Retroviral Elements
Ying Zhang, Irina A. Maksakova, Liane Gagnier, Louie N. van de Lagemaat, Dixie L. Mager
PLoS Genet. 2008 February; 4(2): e1000007. Published online 2008 February 29. doi: 10.1371/journal.pgen.1000007
PMCID:
PMC2265474
Abstract Full Text PDF–506K Supplementary Material
Species-specific endogenous retroviruses shape the transcriptional network of the human tumor suppressor protein p53
Ting Wang, Jue Zeng, Craig B. Lowe, Robert G. Sellers, Sofie R. Salama, Min Yang, Shawn M. Burgess, Rainer K. Brachmann, David Haussler
Proc Natl Acad Sci U S A. 2007 November 20; 104(47): 18613–18618. Published online 2007 November 14. doi: 10.1073/pnas.0703637104
PMCID:
PMC2141825
Abstract Full Text PDF–968K Supplementary Material
Widely variable endogenous retroviral methylation levels in human placenta
Daphne Reiss, Ying Zhang, Dixie L. Mager
Nucleic Acids Res. 2007 July; 35(14): 4743–4754. Published online 2007 July 7. doi: 10.1093/nar/gkm455
PMCID:
PMC1950553
Abstract Full Text PDF–385K Supplementary Material
Retrotransposons Influence the Mouse Transcriptome: Implication for the Divergence of Genetic Traits
Kyoji Horie, Ei-suke Saito, Vincent W. Keng, Ryuji Ikeda, Hiroshi Ishihara, Junji Takeda
Genetics. 2007 June; 176(2): 815–827. doi: 10.1534/genetics.107.071647
PMCID:
PMC1894610
Abstract Full Text PDF–2.2M
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