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Evolutionary conservation of domain-domain interactions
Zohar Itzhaki, Eyal Akiva, Yael Altuvia, Hanah Margalit
Genome Biol. 2006; 7(12): R125. Published online 2006 December 21. doi: 10.1186/gb-2006-7-12-r125
PMCID:
PMC1794438
Abstract Full Text PDF–332K Supplementary Material

Is Cited by the Following 21 Articles in this Archive:

Reduced Polymorphism in Domains Involved in Protein-Protein Interactions
Zohar Itzhaki, Hanah Margalit
PLoS One. 2012; 7(4): e34503. Published online 2012 April 3. doi: 10.1371/journal.pone.0034503
PMCID:
PMC3317993
Abstract Full Text PDF–453K Supplementary Material
Phylogenetic Framework and Molecular Signatures for the Main Clades of the Phylum Actinobacteria
Beile Gao, Radhey S. Gupta
Microbiol Mol Biol Rev. 2012 March; 76(1): 66–112. doi: 10.1128/MMBR.05011-11
PMCID:
PMC3294427
Free in PMC on 2013/03/01
Domain-Domain Interactions Underlying Herpesvirus-Human Protein-Protein Interaction Networks
Zohar Itzhaki
PLoS One. 2011; 6(7): e21724. Published online 2011 July 7. doi: 10.1371/journal.pone.0021724
PMCID:
PMC3131297
Abstract Full Text PDF–170K Supplementary Material
PETALS: Proteomic Evaluation and Topological Analysis of a mutated Locus' Signaling
Gurkan Bebek, Vishal Patel, Mark R Chance
BMC Bioinformatics. 2010; 11: 596. Published online 2010 December 13. doi: 10.1186/1471-2105-11-596
PMCID:
PMC3016410
Abstract Full Text PDF–698K Supplementary Material
Genome-Wide Computational Function Prediction of Arabidopsis Proteins by Integration of Multiple Data Sources
Yiannis A.I. Kourmpetis, Aalt D.J. van Dijk, Roeland C.H.J. van Ham, Cajo J.F. ter Braak
Plant Physiol. 2011 January; 155(1): 271–281. Published online 2010 November 22. doi: 10.1104/pp.110.162164
PMCID:
PMC3075770
Abstract Full Text PDF–500K Supplementary Material
Predicting domain-domain interaction based on domain profiles with feature selection and support vector machines
Alvaro J González, Li Liao
BMC Bioinformatics. 2010; 11: 537. Published online 2010 October 29. doi: 10.1186/1471-2105-11-537
PMCID:
PMC2989984
Abstract Full Text PDF–1.1M
Endoplasmic Reticulum Protein Targeting of Phospholamban: A Common Role for an N-Terminal Di-Arginine Motif in ER Retention?
Parveen Sharma, Vladimir Ignatchenko, Kevin Grace, Claudia Ursprung, Thomas Kislinger, Anthony O. Gramolini
PLoS One. 2010; 5(7): e11496. Published online 2010 July 9. doi: 10.1371/journal.pone.0011496
PMCID:
PMC2901339
Abstract Full Text PDF–2.2M Supplementary Material
Knowledge-guided inference of domain–domain interactions from incomplete protein–protein interaction networks
Mei Liu, Xue-wen Chen, Raja Jothi
Bioinformatics. 2009 October 1; 25(19): 2492–2499. Published online 2009 August 10. doi: 10.1093/bioinformatics/btp480
PMCID:
PMC2752622
Abstract Full Text PDF–458K Supplementary Material
Triangle network motifs predict complexes by complementing high-error interactomes with structural information
Bill Andreopoulos, Christof Winter, Dirk Labudde, Michael Schroeder
BMC Bioinformatics. 2009; 10: 196. Published online 2009 June 27. doi: 10.1186/1471-2105-10-196
PMCID:
PMC2714575
Abstract Full Text PDF–3.0M Supplementary Material
Domain-oriented edge-based alignment of protein interaction networks
Xin Guo, Alexander J. Hartemink
Bioinformatics. 2009 June 15; 25(12): i240–1246. Published online 2009 May 27. doi: 10.1093/bioinformatics/btp202
PMCID:
PMC2687956
Abstract Full Text PDF–552K
A Top-Down Approach to Infer and Compare Domain-Domain Interactions across Eight Model Organisms
Chittibabu Guda, Brian R. King, Lipika R. Pal, Purnima Guda
PLoS ONE. 2009; 4(3): e5096. Published online 2009 March 31. doi: 10.1371/journal.pone.0005096
PMCID:
PMC2659750
Abstract Full Text PDF–533K Supplementary Material
Chromatin- and Transcription-Related Factors Repress Transcription from within Coding Regions throughout the Saccharomyces cerevisiae Genome
Vanessa Cheung, Gordon Chua, Nizar N Batada, Christian R Landry, Stephen W Michnick, Timothy R Hughes, Fred Winston
PLoS Biol. 2008 November; 6(11): e277. Published online 2008 November 11. doi: 10.1371/journal.pbio.0060277
PMCID:
PMC2581627
Abstract Full Text PDF–552K Supplementary Material
Organization of Physical Interactomes as Uncovered by Network Schemas
Eric Banks, Elena Nabieva, Bernard Chazelle, Mona Singh
PLoS Comput Biol. 2008 October; 4(10): e1000203. Published online 2008 October 24. doi: 10.1371/journal.pcbi.1000203
PMCID:
PMC2561054
Abstract Full Text PDF–1.2M Supplementary Material
Interspecies data mining to predict novel ING-protein interactions in human
Paul MK Gordon, Mohamed A Soliman, Pinaki Bose, Quang Trinh, Christoph W Sensen, Karl Riabowol
BMC Genomics. 2008; 9: 426. Published online 2008 September 18. doi: 10.1186/1471-2164-9-426
PMCID:
PMC2565686
Abstract Full Text PDF–2.3M Supplementary Material
NetGrep: fast network schema searches in interactomes
Eric Banks, Elena Nabieva, Ryan Peterson, Mona Singh
Genome Biol. 2008; 9(9): R138. Published online 2008 September 18. doi: 10.1186/gb-2008-9-9-r138
PMCID:
PMC2592716
Abstract Full Text PDF–1.8M Supplementary Material
Built-in loops allow versatility in domain–domain interactions: Lessons from self-interacting domains
Eyal Akiva, Zohar Itzhaki, Hanah Margalit
Proc Natl Acad Sci U S A. 2008 September 9; 105(36): 13292–13297. Published online 2008 August 29. doi: 10.1073/pnas.0801207105
PMCID:
PMC2533183
Abstract Full Text PDF–580K Supplementary Material
Protein Complex Evolution Does Not Involve Extensive Network Rewiring
Teunis J. P. van Dam, Berend Snel
PLoS Comput Biol. 2008 July; 4(7): e1000132. Published online 2008 July 25. doi: 10.1371/journal.pcbi.1000132
PMCID:
PMC2517612
Abstract Full Text PDF–278K Supplementary Material
Interrogating domain-domain interactions with parsimony based approaches
Katia S Guimarães, Teresa M Przytycka
BMC Bioinformatics. 2008; 9: 171. Published online 2008 March 26. doi: 10.1186/1471-2105-9-171
PMCID:
PMC2358894
Abstract Full Text PDF–1.1M Supplementary Material
The Modular Organization of Domain Structures: Insights into Protein–Protein Binding
Antonio del Sol, Pablo Carbonell
PLoS Comput Biol. 2007 December; 3(12): e239. Prepublished online 2007 October 18. Published online 2007 December 7. doi: 10.1371/journal.pcbi.0030239
PMCID:
PMC2134966
Abstract Full Text PDF–547K Supplementary Material
Reuse of structural domain–domain interactions in protein networks
Benjamin Schuster-Böckler, Alex Bateman
BMC Bioinformatics. 2007; 8: 259. Published online 2007 July 18. doi: 10.1186/1471-2105-8-259
PMCID:
PMC1940023
Abstract Full Text PDF–366K Supplementary Material
3D-partner: a web server to infer interacting partners and binding models
Yung-Chiang Chen, Yu-Shu Lo, Wen-Chang Hsu, Jinn-Moon Yang
Nucleic Acids Res. 2007 July; 35(Web Server issue): W561–W567. Published online 2007 July. doi: 10.1093/nar/gkm346
PMCID:
PMC1933210
Abstract Full Text PDF–453K Supplementary Material
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