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Multiple independent evolutionary solutions to core histone gene regulation
Leonardo Mariño-Ramírez, I King Jordan, David Landsman
Genome Biol. 2006; 7(12): R122. Published online 2006 December 21. doi: 10.1186/gb-2006-7-12-r122
PMCID:
PMC1794435
Abstract Full Text PDF–3.5M Supplementary Material
 Is Cited by the Following 10 Articles in this Archive:
The Histone Database: an integrated resource for histones and histone fold-containing proteins
Leonardo Mariño-Ramírez, Kevin M. Levine, Mario Morales, Suiyuan Zhang, R. Travis Moreland, Andreas D. Baxevanis, David Landsman
Database (Oxford) 2011; 2011: bar048. Published online 2011 October 22. doi: 10.1093/database/bar048
PMCID:
PMC3199919
Abstract Full Text PDF–672K
Spt10 and Swi4 Control the Timing of Histone H2A/H2B Gene Activation in Budding Yeast
Peter R. Eriksson, Dwaipayan Ganguli, David J. Clark
Mol Cell Biol. 2011 February; 31(3): 557–572. Published online 2010 November 29. doi: 10.1128/MCB.00909-10
PMCID:
PMC3028627
Abstract Full Text PDF–1.5M
Effects of Alu elements on global nucleosome positioning in the human genome
Yoshiaki Tanaka, Riu Yamashita, Yutaka Suzuki, Kenta Nakai
BMC Genomics. 2010; 11: 309. Published online 2010 May 17. doi: 10.1186/1471-2164-11-309
PMCID:
PMC2878307
Abstract Full Text PDF–3.5M Supplementary Material
Phylogenomics of Unusual Histone H2A Variants in Bdelloid Rotifers
Karine Van Doninck, Morgan L. Mandigo, Jae H. Hur, Peter Wang, Julien Guglielmini, Michel C. Milinkovitch, William S. Lane, Matthew Meselson
PLoS Genet. 2009 March; 5(3): e1000401. Published online 2009 March 6. doi: 10.1371/journal.pgen.1000401
PMCID:
PMC2642717
Abstract Full Text PDF–938K Supplementary Material
Increased Expression of Histone Proteins during Estrogen-Mediated Cell Proliferation
Zheying Zhu, Robert J. Edwards, Alan R. Boobis
Environ Health Perspect. 2009 June; 117(6): 928–934. Published online 2009 February 7. doi: 10.1289/ehp.0800109
PMCID:
PMC2702408
Abstract Full Text PDF–480K
Promoter Analysis: Gene Regulatory Motif Identification with A-GLAM
Leonardo Mariño-Ramírez, Kannan Tharakaraman, John L. Spouge, David Landsman
Methods Mol Biol. Author manuscript; available in PMC 2009 June 27.
Published in final edited form as: Methods Mol Biol. 2009; 537: 263–276. doi: 10.1007/978-1-59745-251-9_13
PMCID:
PMC2702474
Abstract Full Text PDF–899K
Identification of cis-Regulatory Elements in Gene Co-expression Networks Using A-GLAM
Leonardo Mariño-Ramírez, Kannan Tharakaraman, Olivier Bodenreider, John Spouge, David Landsman
Methods Mol Biol. Author manuscript; available in PMC 2009 August 2.
Published in final edited form as: Methods Mol Biol. 2009; 541: 1–22. doi: 10.1007/978-1-59745-243-4_1
PMCID:
PMC2719765
Abstract Full Text PDF–1.5M
Circular reasoning rather than cyclic expression
Lars Juhl Jensen, Ulrik de Lichtenberg, Thomas Skøt Jensen, Søren Brunak, Peer Bork
Genome Biol. 2008; 9(6): 403. Published online 2008 June 23. doi: 10.1186/gb-2008-9-6-403
PMCID:
PMC2481420
Abstract Full Text PDF–1.8M
The biological function of some human transcription factor binding motifs varies with position relative to the transcription start site
Kannan Tharakaraman, Olivier Bodenreider, David Landsman, John L. Spouge, Leonardo Mariño-Ramírez
Nucleic Acids Res. 2008 May; 36(8): 2777–2786. Published online 2008 May. doi: 10.1093/nar/gkn137
PMCID:
PMC2377430
Abstract Full Text PDF–619K Supplementary Material
Systematic sequencing of mRNA from the Antarctic krill (Euphausia superba) and first tissue specific transcriptional signature
Cristiano De Pittà, Cristiano Bertolucci, Gabriella M Mazzotta, Filippo Bernante, Giorgia Rizzo, Barbara De Nardi, Alberto Pallavicini, Gerolamo Lanfranchi, Rodolfo Costa
BMC Genomics. 2008; 9: 45. Published online 2008 January 28. doi: 10.1186/1471-2164-9-45
PMCID:
PMC2270838
Abstract Full Text PDF–574K Supplementary Material
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