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Genome Biol. 2006; 7(12): R119.
Published online 2006 December 14. doi: 10.1186/gb-2006-7-12-r119.
PMCID: PMC1794432
Inferring steady state single-cell gene expression distributions from analysis of mesoscopic samples
Jessica C Mar,1 Renee Rubio,2 and John Quackenbushcorresponding author1,2,3
1Department of Biostatistics, Harvard School of Public Health, Huntington Avenue, Boston, Massachusetts 02115, USA
2Department of Biostatistics and Computational Biology, Dana-Farber Cancer Institute, Binney St, Boston, Massachusetts 02115, USA
3Department of Cancer Biology, Dana-Farber Cancer Institute, Binney St, Boston, Massachusetts 02115, USA
corresponding authorCorresponding author.
Jessica C Mar: jmar/at/hsph.harvard.edu; Renee Rubio: rrubio/at/jimmy.harvard.edu; John Quackenbush: johnq/at/jimmy.harvard.edu
Received August 4, 2006; Revised November 8, 2006; Accepted December 14, 2006.
Abstract
Background
A great deal of interest has been generated by systems biology approaches that attempt to develop quantitative, predictive models of cellular processes. However, the starting point for all cellular gene expression, the transcription of RNA, has not been described and measured in a population of living cells.
Results
Here we present a simple model for transcript levels based on Poisson statistics and provide supporting experimental evidence for genes known to be expressed at high, moderate, and low levels.
Conclusion
Although the model describes a microscopic process occurring at the level of an individual cell, the supporting data we provide uses a small number of cells where the echoes of the underlying stochastic processes can be seen. Not only do these data confirm our model, but this general strategy opens up a potential new approach, Mesoscopic Biology, that can be used to assess the natural variability of processes occurring at the cellular level in biological systems.