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Is mammalian chromosomal evolution driven by regions of genome fragility?
Aurora Ruiz-Herrera, Jose Castresana, Terence J Robinson
Genome Biol. 2006; 7(12): R115. Published online 2006 December 8. doi: 10.1186/gb-2006-7-12-r115
PMCID:
PMC1794428
Abstract Full Text PDF–387K Supplementary Material
 Is Cited by the Following 18 Articles in this Archive:
Assessing the Role of Tandem Repeats in Shaping the Genomic Architecture of Great Apes
Marta Farré, Montserrat Bosch, Francesc López-Giráldez, Montserrat Ponsà, Aurora Ruiz-Herrera
PLoS One. 2011; 6(11): e27239. Published online 2011 November 4. doi: 10.1371/journal.pone.0027239
PMCID:
PMC3208591
Abstract Full Text PDF–769K Supplementary Material
Comparative genomics reveals birth and death of fragile regions in mammalian evolution
Max A Alekseyev, Pavel A Pevzner
Genome Biol. 2010; 11(11): R117. Published online 2010 November 30. doi: 10.1186/gb-2010-11-11-r117
PMCID:
PMC3156956
Abstract Full Text PDF–529K Supplementary Material
Association between simple sequence repeat-rich chromosome regions and intergenomic translocation breakpoints in natural populations of allopolyploid wild wheats
István Molnár, Marta Cifuentes, Annamária Schneider, Elena Benavente, Márta Molnár-Láng
Ann Bot. 2011 January; 107(1): 65–76. Published online 2010 October 28. doi: 10.1093/aob/mcq215
PMCID:
PMC3002473
Abstract Full Text PDF–571K Supplementary Material
Fragile regions and not functional constraints predominate in shaping gene organization in the genus Drosophila
Marcin von Grotthuss, Michael Ashburner, José M. Ranz
Genome Res. 2010 August; 20(8): 1084–1096. doi: 10.1101/gr.103713.109
PMCID:
PMC2909571
Abstract Full Text PDF–805K
Variability in the Incidence of miRNAs and Genes in Fragile Sites and the Role of Repeats and CpG Islands in the Distribution of Genetic Material
Alessandro Laganà, Francesco Russo, Catarina Sismeiro, Rosalba Giugno, Alfredo Pulvirenti, Alfredo Ferro
PLoS One. 2010; 5(6): e11166. Published online 2010 June 17. doi: 10.1371/journal.pone.0011166
PMCID:
PMC2887363
Abstract Full Text PDF–107K Supplementary Material
WWOX gene and gene product: tumor suppression through specific protein interactions
Zaidoun Salah, Rami Aqeilan, Kay Huebner
Future Oncol. Author manuscript; available in PMC 2010 December 1.
Published in final edited form as: Future Oncol. 2010 February; 6(2): 249–259. doi: 10.2217/fon.09.152
PMCID:
PMC2832309
Abstract Full Text PDF–1.0M
Long-range regulation is a major driving force in maintaining genome integrity
Emmanuel Mongin, Ken Dewar, Mathieu Blanchette
BMC Evol Biol. 2009; 9: 203. Published online 2009 August 15. doi: 10.1186/1471-2148-9-203
PMCID:
PMC2741452
Abstract Full Text PDF–1.2M Supplementary Material
The where and wherefore of evolutionary breakpoints
David Sankoff
J Biol. 2009; 8(7): 66. Published online 2009 July 24. doi: 10.1186/jbiol162
PMCID:
PMC2736669
Abstract Full Text PDF–65K
Distinct retroelement classes define evolutionary breakpoints demarcating sites of evolutionary novelty
Mark S Longo, Dawn M Carone, NISC Comparative Sequencing Program, Eric D Green, Michael J O'Neill, Rachel J O'Neill
BMC Genomics. 2009; 10: 334. Published online 2009 July 24. doi: 10.1186/1471-2164-10-334
PMCID:
PMC2736999
Abstract Full Text PDF–1.1M Supplementary Material
Breakpoint regions and homologous synteny blocks in chromosomes have different evolutionary histories
Denis M. Larkin, Greg Pape, Ravikiran Donthu, Loretta Auvil, Michael Welge, Harris A. Lewin
Genome Res. 2009 May; 19(5): 770–777. doi: 10.1101/gr.086546.108
PMCID:
PMC2675965
Abstract Full Text PDF–490K
Breakpoint graphs and ancestral genome reconstructions
Max A. Alekseyev, Pavel A. Pevzner
Genome Res. 2009 May; 19(5): 943–957. doi: 10.1101/gr.082784.108
PMCID:
PMC2675983
Abstract Full Text PDF–1.8M
Gene synteny comparisons between different vertebrates provide new insights into breakage and fusion events during mammalian karyotype evolution
Claus Kemkemer, Matthias Kohn, David N Cooper, Lutz Froenicke, Josef Högel, Horst Hameister, Hildegard Kehrer-Sawatzki
BMC Evol Biol. 2009; 9: 84. Published online 2009 April 24. doi: 10.1186/1471-2148-9-84
PMCID:
PMC2681463
Abstract Full Text PDF–1.1M Supplementary Material
Hemiplasy and homoplasy in the karyotypic phylogenies of mammals
Terence J. Robinson, Aurora Ruiz-Herrera, John C. Avise
Proc Natl Acad Sci U S A. 2008 September 23; 105(38): 14477–14481. Published online 2008 September 11. doi: 10.1073/pnas.0807433105
PMCID:
PMC2567171
Abstract Full Text PDF–260K
Genome-wide mapping and characterization of hypomethylated sites in human tissues and breast cancer cell lines
Yih-Jyh Shann, Ching Cheng, Chun-Hui Chiao, Dow-Tien Chen, Pei-Hsin Li, Ming-Ta Hsu
Genome Res. 2008 May; 18(5): 791–801. doi: 10.1101/gr.070961.107
PMCID:
PMC2336806
Abstract Full Text PDF–1.3M
Genomic Instability Within Centromeres of Interspecific Marsupial Hybrids
Cushla J. Metcalfe, Kira V. Bulazel, Gianni C. Ferreri, Elizabeth Schroeder-Reiter, Gerhard Wanner, Willem Rens, Craig Obergfell, Mark D. B. Eldridge, Rachel J. O'Neill
Genetics. 2007 December; 177(4): 2507–2517. doi: 10.1534/genetics.107.082313
PMCID:
PMC2219476
Abstract Full Text PDF–1.3M
Are There Rearrangement Hotspots in the Human Genome?
Max A Alekseyev, Pavel A Pevzner
PLoS Comput Biol. 2007 November; 3(11): e209. Prepublished online 2007 September 14. Published online 2007 November 9. doi: 10.1371/journal.pcbi.0030209
PMCID:
PMC2065889
Abstract Full Text PDF–287K Supplementary Material
Comparative analysis of chicken chromosome 28 provides new clues to the evolutionary fragility of gene-rich vertebrate regions
Laurie Gordon, Shan Yang, Mary Tran-Gyamfi, Dan Baggott, Mari Christensen, Aaron Hamilton, Richard Crooijmans, Martien Groenen, Susan Lucas, Ivan Ovcharenko, Lisa Stubbs
Genome Res. 2007 November; 17(11): 1603–1613. doi: 10.1101/gr.6775107
PMCID:
PMC2045143
Abstract Full Text PDF–532K
Chromosomal instability in Afrotheria: fragile sites, evolutionary breakpoints and phylogenetic inference from genome sequence assemblies
Aurora Ruiz-Herrera, Terence J Robinson
BMC Evol Biol. 2007; 7: 199. Published online 2007 October 24. doi: 10.1186/1471-2148-7-199
PMCID:
PMC2211313
Abstract Full Text PDF–546K
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