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Am J Hum Genet. 2007 Feb; 80(2): 306–315.
Published online 2006 Dec 29. doi:  10.1086/511280
PMCID: PMC1785352

GDF6, a Novel Locus for a Spectrum of Ocular Developmental Anomalies


Colobomata represent visually impairing ocular closure defects that are associated with a diverse range of developmental anomalies. Characterization of a chromosome 8q21.2-q22.1 segmental deletion in a patient with chorioretinal coloboma revealed elements of nonallelic homologous recombination and nonhomologous end joining. This genomic architecture extends the range of chromosomal rearrangements associated with human disease and indicates that a broader spectrum of human chromosomal rearrangements may use coupled homologous and nonhomologous mechanisms. We also demonstrate that the segmental deletion encompasses GDF6, encoding a member of the bone-morphogenetic protein family, and that inhibition of gdf6a in a model organism accurately recapitulates the proband’s phenotype. The spectrum of disorders generated by morpholino inhibition and the more severe defects (microphthalmia and anophthalmia) observed at higher doses illustrate the key role of GDF6 in ocular development. These results underscore the value of integrated clinical and molecular investigation of patients with chromosomal anomalies.

Normal ocular development entails a series of tightly choreographed events, of which fusing the edges of the optic cup’s embryonic fissure represents a key step in forming the future spherical eye. Disruption of this process results in colobomata (MIM 120200)—congenital anomalies affecting tissues in the posterior (retina, choroid, and optic nerve) and anterior (cornea, iris, and lens) ocular segments. Colobomata may, in turn, cause abnormal morphogenesis of other ocular tissues, because of the retina’s inductive role in lens formation. Consequently, colobomata are frequently associated with ocular malformations, including cataract, microphthalmia, and anophthalmia; systemic anomalies—such as renal anomalies, mental retardation, and CHARGE (coloboma, heart defects, choanal atresia, retarded growth, and genital and ear anomalies [MIM 214800])1—are also observed in a small subset. Causal mutations for coloboma have been identified in only a small number of cases, and the genetic heterogeneity (OTX2 [MIM 600037],2 SHH [MIM 600725],3 MAF [MIM 177075],4 CHX10 [MIM 142993],5 CHD7 [MIM 608892],6,7 and PAX6 [MIM 607108]8) reflects the diverse molecular interactions that control eye development. Although autosomal dominant, recessive, and X-linked inheritance911 of colobomata are observed, the absence of clear Mendelian inheritance patterns indicates the presence of a less straightforward molecular basis in some cases.2,12,13 Increasing the proportion of colobomata with a defined genetic origin would benefit the understanding of complex disease and provide novel insight for ocular development and may identify therapeutic targets for a frequently blinding disorder.

Colobomata are associated with rearrangements affecting at least 10 autosomes,36,8,12,1417 including several syndromes, such as CHARGE,7,6 “Cat eye” syndrome (MIM 115470),17,18 Jacobsen syndrome (MIM 147791),19 and Wolf-Hirschhorn syndrome (MIM 194190).16 Study of chromosomal anomalies has proved a fruitful means of identifying dosage- or position effect–sensitive genes, particularly for ocular disorders, since research is facilitated by the fact that the eye is composed of an interface of embryonically distinct tissues and by accessibility to detailed phenotyping.2023 Detection of a segmental deletion syntenic with the murine ocular malformation locus Tcm24,25 in a patient with colobomata enabled us to investigate the cause of the ocular developmental phenotype and the mechanism mediating this chromosomal rearrangement. Observation of features of nonallelic homologous recombination (NAHR) and nonhomologous end joining (NHEJ) in this segmental deletion extend the range of chromosome rearrangements associated with human disease. Analyses of genes within and adjacent to the segmental deletion led us to identify growth differentiation factor 6 (GDF6 [MIM 601147]) as a candidate gene for the patient’s ocular phenotype. Morpholino inhibition of the function of gdf6 in zebrafish, performed to evaluate this gene’s role in retinal development, recapitulated the patient’s phenotype.

Material and Methods


Peripheral-blood samples were obtained from a family in which ocular and systemic developmental anomalies had been identified in one individual. In view of the breadth of the phenotype, karyotyping of the proband and her parents was undertaken, together with subsequent multiplex-FISH (M-FISH) analysis. This study was approved by the University of Alberta Hospital Health Research Ethics Board, and informed consent was obtained from all participants.

Defining the Segmental Deletion

After initial karyotyping (at the University of Alberta Hospital Cytogenetics Laboratory) revealed a chromosome 8q segmental deletion, M-FISH was undertaken using region-specific and partially overlapping chromosome probes (mBAND X Cyte8 probe set [MetaSystems]).26 Each contains a unique fluorochrome, which permits quantitative analysis of fluorescence intensity along a chromosome. The deletion’s extent was next refined by fluorescent microsatellite-marker genotyping (centromeric: D8S1697, D8S1702, D8S1838, D8S461, D8S1912, and D8S1119; telomeric: D8S1699, D8S1127, D8S1772, D8S1129, and D8S1778). Subsequently, comparative genomic hybridization (CGH) was performed with a custom array comprising isothermal, long oligonucleotide probes tiled at a 5-kb density across the repeat-masked genomic interval encompassing the segmental deletion (Nimblegen). The mean probe density was increased to 1 kb in regions predicted by microsatellite-marker genotyping to correspond to the centromeric and telomeric breakpoints. CGH was performed as described elsewhere,27 with use of the proband’s DNA labeled with Cy3, hybridized with a Cy5-labeled reference DNA.

Amplification of the Junctional Fragment

Guided by the CGH results and bioinformatic sequence information, multiple primer pairs were designed to amplify a junctional fragment that spanned the segmental deletion. One of these nine primer permutations (F2-R3) yielded an amplicon in the proband, through use of long-range PCR (Elongase [Invitrogen]), which was purified with Montage (Millipore) and was sequenced using these and internal primers (table 1), with a BigDye (v3.1) terminator kit and 3100 DNA sequencer (Applied Biosystems). Subsequent in silico analyses of the sequence adjacent to the breakpoint were performed with Ensembl, University of California–Santa Cruz (UCSC), and National Center for Biotechnology Information (NCBI) Entrez genome browsers. Through use of BLASTn (NCBI BLAST),28 homologous sequences adjacent to the breakpoint were identified, and the boundaries of the repeat elements were determined using PipMaker29 and Ensembl, UCSC, NCBI Entrez, and NCBI BLAST.

Table 1.
Primers Used to Amplify the Chromosome 8q22 Junctional Fragment and for RT-PCR of Murine and Zebrafish gdf6

Bioinformatic and Expression Analyses

Database analyses of genes lying in the deleted region or adjacent to the breakpoints were performed to identify candidate(s) for the ocular phenotype (Ensembl, UCSC, and UniGene). FISH was also undertaken with the BAC clone RP11-516P9, to validate database predictions. The expression of one gene (GDF6) was investigated by RT-PCR of murine (adult and embryonic) and zebrafish (18 and 42 h postfertilization [hpf]) tissue (through use of primers shown in table 1 and Superscript III RT-PCR [Invitrogen]). Ethidium bromide–stained amplicons were visualized on 1% agarose gels. Whole-mount in situ hybridization was undertaken using digoxigenin-labeled antisense RNA probes specific to retinal developmental genes that are primarily markers of regional identity. cDNA from hmx3b (nkx5.1/soho1), aldh1a2 (raldh2), and foxg1 were generated, and in situ hybridization was performed as described elsewhere30 on wild-type and gdf6a-morphant zebrafish.

Analysis of gdf6a Function in Zebrafish

Zebrafish possess two orthologues, gdf6a (radar) and gdf6b (dynamo),31 with gdf6a expressed in developing retina, dorsal fin, dorsal neural tube, and posterior endoderm.32,33 Zebrafish embryos have two sources of gdf6a: unspliced zygotic and prespliced maternal gdf6a mRNA. Morpholino inhibition of zebrafish zygotic gdf6a function results in cranial and dorsal neural-tube apoptosis, whereas inhibition of both maternal and zygotic gdf6a (with a translation-blocking morpholino) generates an earlier dorsalized phenotype, thereby preventing analysis of eye development.34 Accordingly, two splice-blocking morpholino antisense oligonucleotides (MOs) were designed to independently target gdf6a splicing, which enables comparison of the phenotype generated by each. The first (gdf6aMO1) targets the 5′ splice site, whereas the second (gdf6aMO2) targets the intron 1–exon 2 boundary. Additional morpholinos were designed to target the translation start site of gdf6b (gdf6bMO) and to provide a capability to reduce apoptotic cell death to the translation start site of p53 (p53MO). Oligonucleotides gdf6aMO1 (GCAATACAAACCTTTTCCCTTGTCC),34 gdf6aMO2 (GAGATCGTCTGCAAGATAAAGAGAA), and p53MO (GCGCCATTGCTTTGCAAGAATTG)35 were provided by Gene Tools; gdf6bMO (TCAAAAGTATCCCGCAGGCACACAT) was provided by Open Biosystems. The efficiency of the two gdf6a morpholinos was evaluated by RT-PCR of mRNA derived from 18-hpf uninjected and morphant embryos, by use of gdf6a primers spanning the intron (table 1). Zebrafish (AB strain) were obtained from the zebrafish stock center ZIRC and were maintained under standard conditions. Morpholino (2–4 nl) was injected into one-cell–stage zebrafish embryos, at a concentration of 2.5 mg/ml, as described elsewhere.36 All injections of gdf6a morpholino included 3 ng of p53MO to reduce apoptotic cell death, a known side effect of morpholino injection. Morphological observations were made with an Olympus SZX12 stereomicroscope and were recorded using a Qimaging micropublisher digital (charged-couple device) camera. For histological analysis, larvae were fixed in a 2.5% glutaraldehyde, 1% paraformaldehyde mix, followed by 4% osmium tetroxide, embedded in Epon, and a thin (1 μm) section cut with an ultramicrotome. Richardson’s and phalloidin stains were used to visualize structural details within the retina and surrounding tissues.



The proband exhibited multiple developmental defects, including neurodevelopmental impairment (performance IQ 74), bilateral soft-tissue syndactyly of the 2nd and 3rd toes, an atrial septal defect, and ocular malformations (fig. 1). The latter comprised bilateral retinochoroidal colobomata with optic-nerve involvement (fig. (fig.1A1A and and1B),1B), plus a unilateral iris coloboma (fig. 1C), which reduced vision to counting fingers and 20/50 in the right and left eyes, respectively. Although the proband’s father was asymptomatic, ocular examination revealed features of much milder developmental defects that included a minor degree of optic-nerve dysplasia, anomalous retinal vascular branching, and small retinochoroidal colobomata (fig. (fig.1G1G and and1H).1H). The changes were associated with corrected acuities of 20/20−2 and 20/30 (normal ∼20/20).

Figure  1.
AF, Phenotypes of proband with chromosome 8q segmental deletion who has colobomatous developmental anomalies affecting the anterior and posterior ocular segments (A). Note the junction between the normal and abnormal retina. B, Retinochoroidal ...

Fine Mapping and Sequencing of Breakpoint

Karyotyping identified a chromosome 8q segmental deletion—46,XX, del (8)(q21.2q22.1)—in the proband but in neither parent (data not shown). These findings were confirmed by M-FISH, with the segmental deletion present in all 13 examined metaphase preparations (fig. (fig.1J1J1L). The informativeness of microsatellite-marker genotyping was constrained by the small pedigree size and polymorphism-information-content values of available markers. Nonetheless, it confirmed that the deletion was present in the paternally derived chromosome 8, and the semiquantitative dosage information it provided localized the centromeric and telomeric breakpoints to ∼3-Mb regions. CGH accurately defined the extent of the segmental deletion (10.37 Mb) and refined the breakpoint positions to ∼10-kb intervals (data not shown). Long-range PCR amplified a 4.5-kb junctional fragment in the proband but in neither parent (fig. 2C). Sequence analysis of the junctional fragment revealed the insertion of four nucleotides (AGCT) at the junction of the centromeric and telomeric breakpoints (fig. (fig.2A2A and and2B).2B). The telomeric breakpoint lies in a long terminal repeat (LTR) of family MaLR, within a 3.6-kb region of repetitive sequence (fig. 2A). The centromeric breakpoint is within an Alu element located within a 5.7-kb stretch of contiguous repeats (short interspersed nuclear elements [SINEs], long interspersed nuclear elements [LINEs], LTRs, and simple repeats).

Figure  2.
A, Schematic representation of the proband’s segmental deletion, with coordinates of the centromeric and telomeric breakpoints shown above the representation. GDF6 is located at positions 97223736–97244196. B, Sequence of junctional fragment ...

Candidate-Gene and Mutation Analysis

The proband’s retinal phenotype and the known molecular conservation of ocular development were used to identify candidate genes in silico. Of 31 genes within and 10 adjacent to the segmental deletion, 14 were expressed in both fetal eye and retinal tissue, and, of these, 11 (CA2, CA3, WWP1, NBN, FAM82B, TMEM64, TMEM55A, UQCRB, PTDSS1, SDC2, and GDF6) had orthologues present in Fugu or Danio. Because of its involvement in bone morphogenetic protein (BMP) signaling, its developmental role, and the location of Gdf6 within the Tcm locus,24 GDF6 was selected for more-detailed study. Subsequent refinement of the Tcm locus from a 26-Mb24 to a 1.3-Mb25 interval permitted comparison of the five genes or transcripts (unknown, helicase-related, Cralbp-related, Asph, and Gdf6) within the Tcm locus with those encompassed by the segmental deletion. Because of a synteny break between human chromosome 8 and murine chromosome 4, Gdf6/GDF6 is the only gene common to the Tcm and chromosome 8q segmental deletion intervals (fig. 2D).

Studies of gdf6a in Zebrafish

Previous studies have examined the role of gdf6a in early dorsal-ventral axis formation, but its function during retinal development remains to be elucidated. The expression of zebrafish gdf6a was examined with in situ hybridization and was shown to be specific for the dorsotemporal region of the developing retina at 18 and 24 hpf (fig. (fig.3A3A and and3B).3B). The expression pattern of Gdf6 is evolutionarily conserved, as determined by our RT-PCR results of murine retina during early development and the published expression in the dorsal retina of Xenopus37 (data not shown). Splice-blocking gdf6a morpholinos were injected into one-cell–stage zebrafish embryos; RT-PCR confirmed that >70% of gdf6a mRNA was aberrantly spliced in both gdf6aMO1- and gdf6aMO2-injected morphants (fig. 3C). Morpholino inhibition of gdf6a function revealed the axial vasculature, dorsal fin, hypochord, and dorsal neural-tube anomalies (reported elsewhere32,33). In situ hybridization with probes to aldh1a2, hmx3b, and foxg1 demonstrated that gdf6a morpholinos profoundly altered retinal patterning (fig. (fig.3D3D3L). Expression of aldh1a2, a marker of dorsotemporal retina, was completely eliminated in 90% and 97% of gdf6aMO1- and gdf6aMO2-injected embryos, respectively (n=113) (fig. (fig.3D3D3F). Expression of hmx3b, an early marker of dorsal retina, was strongly reduced in 81% and 85% of gdf6aMO1- and gdf6aMO2-injected embryos, respectively (n=110) (fig. (fig.3G3G3I). In contrast, expression of foxg1, a marker of ventral-nasal retina, was expanded in 77% and 88% of gdf6aMO1- and gdf6aMO2-injected embryos, respectively (n=118) (fig. (fig.3J3J3L). Lenticular expression of hmx3b was unaltered in morphant embryos (fig. (fig.3G3G3I). Overall, these results demonstrate that gdf6a functions to specify dorsotemporal retinal identity and to repress ventronasal identity.

Figure  3.
A and B, In situ analysis of gdf6a expression in developing wild-type zebrafish embryos at 18 and 24 hpf. C, RT-PCR used to measure spliced gdf6a transcripts from uninjected (WT), gdf6aMO1-injected (MO1), and gdf6aMO2-injected (MO2) embryos, illustrating ...

In addition, as is evident (fig. 4), gdf6a morphants exhibit a range of ocular anomalies that recapitulate the patient phenotype (fig. 1). These features, apparent as early as 18 hpf, include ventral colobomata (35%; n=214, at 48 hpf), persistent dorsal-retinal groove (17%; n=214, at 48 hpf), and decreased ocular and lenticular size (30%; n=214, at 48 hpf) (figs. (figs.4A4A, 4B4B, and and5).5). In contrast to the declining proportion of morphants observed with colobomatous defects at later stages (ventral coloboma [10% at 72 hpf], dorsal-retinal groove [2% at 72 hpf] [fig. [fig.4A4A4D]), the frequency of lens extrusion and microphthalmia (9% and 60%, respectively, at 120 hpf) increased over time (figs. (figs.4E4E4H and and5).5). Injection of higher doses of gdf6a morpholino cause ocular regression to vestigial structures that resemble human anophthalmia (fig. 4H). To investigate retinal development at the cellular level, we examined gdf6a morpholino–treated zebrafish embryos histologically. This revealed a consistent reduction in ocular, lenticular, and retinal size, together with prominent defects in both retina and lens (fig. (fig.4I4I4L). Although all cell types are visible, the retina is disorganized, indicating a critical role for gdf6a in regulating neural retina cell behavior. Furthermore, we find that the optic nerve is hypoplastic and occasionally absent in morphant embryos (10% of embryos are affected) (fig. (fig.4J4J and and4L).4L). In stark contrast to our results with gdf6a/radar, inhibition of gdf6b/dynamo function revealed no ocular phenotype, which clearly demonstrates the specific role of gdf6a in ocular morphology.

Figure  4.
Larval zebrafish retinal defects, caused by injection of splice-blocking gdf6a morpholinos. Wild-type images at 48 hpf (A) and 72 hpf (C), compared with morphant counterparts (B and D). Decrease in lenticular and ocular size is evident at later stages ...
Figure  5.
Quantitative ocular phenotypic data from wild-type and gdf6a morphant (5 ng gdf6aMO1 plus 3 ng p53MO) embryos at 2–5 dpf.


Although colobomata represent a relatively common developmental anomaly (2.6 in 10,000 births)38 that account for up to 11% of pediatric blindness,1 knowledge of the genetic basis remains limited. The identification of additional colobomata-causing genes is thus of value; it improves the understanding of function in both normal development and disease and provides the realistic prospect of elucidating non-Mendelian pathways that contribute to ocular-disease phenotypes. The present study characterizes a novel chromosomal anomaly associated with ocular colobomata, provides strong evidence of the key role of GDF6 in ocular development, and illustrates the interrelated nature of several ocular-disease phenotypes.

GDF6 is a member of the BMP subfamily of transforming growth factor-beta (TGFβ) signaling ligands, which are involved in the creation of dorsal-ventral axes, specification of neural crest, bone formation, and organogenesis.39,40 Evidence of involvement of BMP proteins in retinal development is provided by the laminar organization and retinal axon pathfinding defects caused by overexpression of the BMP inhibitor gremlin.41 However, despite studies of model organisms, the role of BMP signaling in retinal development remains insufficiently characterized, and, in particular, the contribution that BMP mutations make to human ocular disease has not been determined.

Ascribing phenotypic causation to a single candidate gene in a large deleted interval presents challenges. Accordingly, a variety of techniques—including CGH deletion mapping, expression analysis, and study of a zebrafish model of reduced gdf6a function—were undertaken, which indicate GDF6’s responsibility for the ocular malformations. Gdf6/gdf6’s expression is temporally and spatially appropriate for a developmental retinal phenotype, and support for its involvement in the observed eye phenotypes is provided by its role in ventral patterning23—a process that, when disrupted by SHH mutations, also results in colobomata.3 This accords with decreased GDF6 copy number (figs. (figs.11 and and2),2), the eye’s exquisite sensitivity to altered gene dosage,23,4246 the precise dosage requirement of TGFβ-signaling ligands, and the results of gdf6a-morpholino inhibition.

To validate these findings, gdf6 gene function was inhibited in a zebrafish model. The recapitulation of the proband’s phenotype—which generated posterior (dorsal or retinochoroidal) and anterior segment (ventral or iris) colobomata as well as microphthalmia—verifies the key role of gdf6 and GDF6 in ocular development. The specificity of these effects is demonstrated by the unaffected lens expression of hmx3b, decreased retinal expression of aldh1a2 and hmx3b, and expanded retinal expression of foxg1 (fig. 3), plus the phenotypic spectrum induced by progressively higher morpholino doses (microphthalmia and posterior-segment colobomata, anterior-segment colobomata, and, finally, anophthalmia) (fig. 4). Furthermore, observation of retina-specific defects at a stage (18 hpf) before retinal vascularization precludes the ocular phenotypes being attributable to nonspecific effects, such as morpholino-induced retinal hypovascularization. Finally, existence of the irradiation-induced Tcm mutant, mapping to a small interval containing Gdf6, complements the human and zebrafish phenotypes. In view of the fact that only Gdf6/GDF6 is present in both the Tcm and segmentally deleted intervals and that Gdf6-coding mutations were not observed in Tcm mice,25 the possibility that Tcm is allelic and attributable to a segmental anomaly affecting a Gdf6 regulatory element should be critically evaluated. Tcm mice have multiple ocular phenotypes but none of the proband’s syndromic features. In contrast, of the two murine Gdf6+/− strains generated, one has only skeletal features described,47 whereas the other exhibits both skeletal and ocular anomalies (Mouse Genome Informatics [accession number MGI:3604391]), which provides confirmation of the role of gdf6, Gdf6, and GDF6 in eye development.

The effects of zebrafish gdf6a inhibition illustrate the interrelated nature of certain ocular phenotypes. In patients, failure of embryonic fissure closure is associated with variation in ocular size, including microphthalmia, axial length <20 mm (normal 23.5 mm), and anophthalmia (absent eyes or rudimentary ocular remnants). Complementing these clinical observations, in our zebrafish model, more-severe phenotypes were induced with progressively lower gdf6 levels. In addition to the ocular anomalies, the syndactyly accords with the identical phenotype generated by mutation in the BMP-antagonist NOGGIN48 and Gdf6’s role in skeletal development, where null gdf6 mutations cause carpal and tarsal bone fusion.47 The same but milder phenotypes present in the proband’s father could be compatible with gonosomal mosaicism or chromosomal inversion, and future cytogenetic analyses may differentiate between these possibilities.

Segmental deletions (and duplications) are usually generated by low-copy repeats (LCRs) that provide a substrate for NAHR. Less frequently, NHEJ is responsible, and such rearrangements are characterized by insertion of additional bases at the junction and at breakpoints lying within Alu elements or LINEs. The segmental deletion identified in this study exhibits features of both mechanisms. The presence of LTRs on both sides of the deletion indicates intrachromosomal NAHR, whereas the breakpoint’s centromeric end’s location in an Alu, together with insertion of 4 bp, suggests NHEJ. The combination of NAHR and NHEJ has recently been reported in X-chromosomal segmental duplications.49,50 Observation of NAHR and NHEJ with a segmental deletion extends the range of chromosome rearrangements associated with human disease and indicates that a broader spectrum of human chromosomal rearrangements may use coupled homologous and nonhomologous mechanisms.

In summary, it is evident that GDF6 has an essential role in retinal development and that altered gene dosage results in a diverse spectrum of ocular malformations. The human and zebrafish phenotypes confirm interspecies conservation of the requirement for precise GDF6/gdf6 dosage in normal development. The studies we have undertaken so far have identified genetic variants that cause substantial functional defects. These ocular phenotypes range from optic-nerve hypoplasia to coloboma/microphthalmia and anophthalmia, which raises the possibility that milder sequence changes contributing to other phenotypes remain to be determined. Availability of zebrafish and murine models, especially Gdf6+/− mice in which detailed analysis of the retina has yet to be reported,47 will facilitate testing of this hypothesis. Equally exciting is the potential for determining the phenotypes associated with reciprocal chromosomal anomalies, exogenous gdf6’s ability to rescue induced phenotypes, and the role of other members of the same clade in ocular development and disease. Such investigations, which are just beginning, stem from clinical observation51,52 of a broader phenotype in a patient with chorioretinal colobomata and may improve understanding of and the outcome for a frequently blinding disorder.

Note Added in Proof.—While this manuscript was under review, Hanel and Hensey53 demonstrated inhibition of Xenopus gdf6 results in ocular developmental phenotypes, providing further confirmation of this gene's important role in vertebrate eye development.


We thank the patients for their help with this study; Federic Rosa, Samual Sidi, Mora Robu, and Stephen Ekker, for sharing unpublished information; Dr. Stephen Bamforth, for helpful discussions; and Dr. Garry Drummond, for referring the proband. This work was supported by the Canadian Institutes of Health Research (to A.J.W. and O.J.L.), Alberta Heritage Foundation for Medical Research (to O.J.L.), Canadian Foundation for Innovation (to O.J.L.), and National Scientific Engineering Council and Alberta Ingenuity Fund (to A.J.W.). A.J.W. and O.J.L. are recipients of Canada Research Chairs.

Web Resources

The accession number and URLs for data presented herein are as follows:

Ensembl Genome Browser, http://www.ensembl.org/index.html (for version 36)
Mouse Genome Informatics, http://www.informatics.jax.org/ (for Gdf6 [accession number MGI:3604391])
Online Mendelian Inheritance in Man (OMIM), http://www.ncbi.nlm.nih.gov/Omim/ (for coloboma, CHARGE, OTX2, SHH, MAF, CHX10, CHD7, PAX6, Cat eye syndrome, Jacobsen syndrome, Wolf-Hirschhorn syndrome, and GDF6)
UCSC Genome Browser, http://genome.ucsc.edu/


1. Gregory-Evans CY, Williams MJ, Halford S, Gregory-Evans K (2004) Ocular coloboma: a reassessment in the age of molecular neuroscience. J Med Genet 41:881–891 [PMC free article] [PubMed] [Cross Ref]10.1136/jmg.2004.025494
2. Ragge NK, Brown AG, Poloschek CM, Lorenz B, Henderson RA, Clarke MP, Russell-Eggitt I, Fielder A, Gerrelli D, Martinez-Barbera JP, et al (2005) Heterozygous mutations of OTX2 cause severe ocular malformations. Am J Hum Genet 76:1008–1022 [PMC free article] [PubMed]
3. Schimmenti LA, de la Cruz J, Lewis RA, Karkera JD, Manligas GS, Roessler E, Muenke M (2003) Novel mutation in sonic hedgehog in non-syndromic colobomatous microphthalmia. Am J Med Genet A 116:215–221 [PubMed] [Cross Ref]10.1002/ajmg.a.10884
4. Jamieson RV, Perveen R, Kerr B, Carette M, Yardley J, Heon E, Wirth MG, van Heyningen V, Donnai D, Munier F, et al (2002) Domain disruption and mutation of the bZIP transcription factor, MAF, associated with cataract, ocular anterior segment dysgenesis and coloboma. Hum Mol Genet 11:33–42 [PubMed] [Cross Ref]10.1093/hmg/11.1.33
5. Ferda Percin E, Ploder LA, Yu JJ, Arici K, Horsford DJ, Rutherford A, Bapat B, Cox DW, Duncan AM, Kalnins VI, et al (2000) Human microphthalmia associated with mutations in the retinal homeobox gene CHX10. Nat Genet 25:397–401 [PubMed] [Cross Ref]10.1038/78071
6. Vissers LE, van Ravenswaaij CM, Admiraal R, Hurst JA, de Vries BB, Janssen IM, van der Vliet WA, Huys EH, de Jong PJ, Hamel BC, et al (2004) Mutations in a new member of the chromodomain gene family cause CHARGE syndrome. Nat Genet 36:955–957 [PubMed] [Cross Ref]10.1038/ng1407
7. Lalani SR, Safiullah AM, Fernbach SD, Harutyunyan KG, Thaller C, Peterson LE, McPherson JD, Gibbs RA, White LD, Hefner M, et al (2006) Spectrum of CHD7 mutations in 110 individuals with CHARGE syndrome and genotype-phenotype correlation. Am J Hum Genet 78:303–314 [PMC free article] [PubMed]
8. Azuma N, Yamaguchi Y, Handa H, Hayakawa M, Kanai A, Yamada M (1999) Missense mutation in the alternative splice region of the PAX6 gene in eye anomalies. Am J Hum Genet 65:656–663 [PMC free article] [PubMed]
9. Toker E, Elcioglu N, Ozcan E, Yenice O, Ogut M (2003) Colobomatous macrophthalmia with microcornea syndrome: report of a new pedigree. Am J Med Genet A 121:25–30 [PubMed] [Cross Ref]10.1002/ajmg.a.20083
10. Lehman DM, Sponsel WE, Stratton RF, Mensah J, Macdonald JC, Johnson-Pais TL, Coon H, Reveles XT, Cody JD, Leach RJ (2001) Genetic mapping of a novel X-linked recessive colobomatous microphthalmia. Am J Med Genet 101:114–119 [PubMed] [Cross Ref]10.1002/ajmg.1330
11. Porges Y, Gershoni-Baruch R, Leibu R, Goldscher D, Zonis S, Shapira I, Miller B (1992) Hereditary microphthalmia with colobomatous cyst. Am J Ophthalmol 114:30–34 [PubMed]
12. Morlé L, Bozon M, Zech J-C, Alloisio N, Raas-Rothschild A, Philippe C, Lambert J-C, Godet J, Plauchu H, Edery P (2000) A locus for autosomal dominant colobomatous microphthalmia maps to chromosome 15q12-q15. Am J Hum Genet 67:1592–1597 [PMC free article] [PubMed]
13. Barros-Nunez P, Medina C, Mendoza R, Sanchez-Corona J, Garcia-Cruz D (1995) Unexpected familial recurrence of iris coloboma: a delayed mutation mechanism? Clin Genet 48:160–161 [PubMed]
14. Eccles MR, Schimmenti LA (1999) Renal-coloboma syndrome: a multi-system developmental disorder caused by PAX2 mutations. Clin Genet 56:1–9 [PubMed] [Cross Ref]10.1034/j.1399-0004.1999.560101.x
15. Nixon J, Oldridge M, Wilkie AO, Smith K (1997) Interstitial deletion of 2q associated with craniosynostosis, ocular coloboma, and limb abnormalities: cytogenetic and molecular investigation. Am J Med Genet 70:324–327 [PubMed] [Cross Ref]10.1002/(SICI)1096-8628(19970613)70:3<324::AID-AJMG20>3.0.CO;2-M
16. Zollino M, Lecce R, Fischetto R, Murdolo M, Faravelli F, Selicorni A, Buttè C, Memo L, Capovilla G, Neri G (2003) Mapping the Wolf-Hirschhorn syndrome phenotype outside the currently accepted WHS critical region and defining a new critical region, WHSCR-2. Am J Hum Genet 72:590–597 [PMC free article] [PubMed]
17. Morrison DA, FitzPatrick DR, Fleck BW (2002) Iris coloboma and a microdeletion of chromosome 22: del(22)(q11.22). Br J Ophthalmol 86:1316 [PMC free article] [PubMed] [Cross Ref]10.1136/bjo.86.11.1316
18. McTaggart KE, Budarf ML, Driscoll DA, Emanuel BS, Ferreira P, McDermid HE (1998) Cat eye syndrome chromosome breakpoint clustering: identification of two intervals also associated with 22q11 deletion syndrome breakpoints. Cytogenet Cell Genet 81:222–228 [PubMed] [Cross Ref]10.1159/000015035
19. Pivnick EK, Velagaleti GV, Wilroy RS, Smith ME, Rose SR, Tipton RE, Tharapel AT (1996) Jacobsen syndrome: report of a patient with severe eye anomalies, growth hormone deficiency, and hypothyroidism associated with deletion 11 (q23q25) and review of 52 cases. J Med Genet 33:772–778 [PMC free article] [PubMed]
20. Fang J, Dagenais SL, Erickson RP, Arlt MF, Glynn MW, Gorski JL, Seaver LH, Glover TW (2000) Mutations in FOXC2 (MFH-1), a forkhead family transcription factor, are responsible for the hereditary lymphedema-distichiasis syndrome. Am J Hum Genet 67:1382–1388 [PMC free article] [PubMed]
21. Nishimura DY, Swiderski RE, Alward WL, Searby CC, Patil SR, Bennet SR, Kanis AB, Gastier JM, Stone EM, Sheffield VC (1998) The forkhead transcription factor gene FKHL7 is responsible for glaucoma phenotypes which map to 6p25. Nat Genet 19:140–147 [PubMed] [Cross Ref]10.1038/493
22. Crisponi L, Deiana M, Loi A, Chiappe F, Uda M, Amati P, Bisceglia L, Zelante L, Nagaraja R, Porcu S, et al (2001) The putative forkhead transcription factor FOXL2 is mutated in blepharophimosis/ptosis/epicanthus inversus syndrome. Nat Genet 27:159–166 [PubMed] [Cross Ref]10.1038/84781
23. Fantes J, Ragge NK, Lynch SA, McGill NI, Collin JR, Howard-Peebles PN, Hayward C, Vivian AJ, Williamson K, van Heyningen V, et al (2003) Mutations in SOX2 cause anophthalmia. Nat Genet 33:461–463 [PubMed] [Cross Ref]10.1038/ng1120
24. Zhou E, Grimes P, Favor J, Koeberlein B, Pretsch W, Neuhauser-Klaus A, Sidjanin D, Stambolian D (1997) Genetic mapping of a mouse ocular malformation locus, Tcm, to chromosome 4. Mamm Genome 8:178–181 [PubMed] [Cross Ref]10.1007/s003359900385
25. Wang KS, Zahn LE, Favor J, Huang KM, Stambolian D (2005) Genetic and phenotypic analysis of Tcm, a mutation affecting early eye development. Mamm Genome 16:332–343 [PubMed] [Cross Ref]10.1007/s00335-004-2444-7
26. Speicher MR, Gwyn Ballard S, Ward DC (1996) Karyotyping human chromosomes by combinatorial multi-fluor FISH. Nat Genet 12:368–375 [PubMed] [Cross Ref]10.1038/ng0496-368
27. Selzer RR, Richmond TA, Pofahl NJ, Green RD, Eis PS, Nair P, Brothman AR, Stallings RL (2005) Analysis of chromosome breakpoints in neuroblastoma at sub-kilobase resolution using fine-tiling oligonucleotide array CGH. Genes Chromosomes Cancer 44:305–319 [PubMed] [Cross Ref]10.1002/gcc.20243
28. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ (1990) Basic local alignment search tool. J Mol Biol 215:403–410 [PubMed] [Cross Ref]10.1006/jmbi.1990.9999
29. Schwartz S, Zhang Z, Frazer KA, Smit A, Riemer C, Bouck J, Gibbs R, Hardison R, Miller W (2000) PipMaker—a web server for aligning two genomic DNA sequences. Genome Res 10:577–586 [PMC free article] [PubMed] [Cross Ref]10.1101/gr.10.4.577
30. Prince VE, Moens CB, Kimmel CB, Ho RK (1998) Zebrafish hox genes: expression in the hindbrain region of wild-type and mutants of the segmentation gene, valentino. Development 125:393–406 [PubMed]
31. Davidson AJ, Postlethwait JH, Yan YL, Beier DR, van Doren C, Foernzler D, Celeste AJ, Crosier KE, Crosier PS (1999) Isolation of zebrafish gdf7 and comparative genetic mapping of genes belonging to the growth/differentiation factor 5, 6, 7 subgroup of the TGF-beta superfamily. Genome Res 9:121–129 [PubMed]
32. Rissi M, Wittbrodt J, Delot E, Naegeli M, Rosa FM (1995) Zebrafish radar: a new member of the TGF-beta superfamily defines dorsal regions of the neural plate and the embryonic retina. Mech Dev 49:223–234 [PubMed] [Cross Ref]10.1016/0925-4773(94)00320-M
33. Hall CJ, Flores MV, Davidson AJ, Crosier KE, Crosier PS (2002) Radar is required for the establishment of vascular integrity in the zebrafish. Dev Biol 251:105–117 [PubMed] [Cross Ref]10.1006/dbio.2002.0794
34. Sidi S, Goutel C, Peyrieras N, Rosa FM (2003) Maternal induction of ventral fate by zebrafish radar. Proc Natl Acad Sci USA 100:3315–3320 [PMC free article] [PubMed] [Cross Ref]10.1073/pnas.0530115100
35. Langheinrich U, Hennen E, Stott G, Vacun G (2002) Zebrafish as a model organism for the identification and characterization of drugs and genes affecting p53 signaling. Curr Biol 12:2023–2028 [PubMed] [Cross Ref]10.1016/S0960-9822(02)01319-2
36. Waskiewicz AJ, Rikhof HA, Moens CB (2002) Eliminating zebrafish pbx proteins reveals a hindbrain ground state. Dev Cell 3:723–733 [PubMed] [Cross Ref]10.1016/S1534-5807(02)00319-2
37. Chang C, Hemmati-Brivanlou A (1999) Xenopus GDF6, a new antagonist of noggin and a partner of BMPs. Development 126:3347–3357 [PubMed]
38. Stoll C, Alembik Y, Dott B, Roth MP (1997) Congenital eye malformations in 212,479 consecutive births. Ann Genet 40:122–128 [PubMed]
39. Storm EE, Huynh TV, Copeland NG, Jenkins NA, Kingsley DM, Lee SJ (1994) Limb alterations in brachypodism mice due to mutations in a new member of the TGF beta-superfamily. Nature 368:639–643 [PubMed] [Cross Ref]10.1038/368639a0
40. Wolfman NM, Hattersley G, Cox K, Celeste AJ, Nelson R, Yamaji N, Dube JL, DiBlasio-Smith E, Nove J, Song JJ, et al (1997) Ectopic induction of tendon and ligament in rats by growth and differentiation factors 5, 6, and 7, members of the TGF-beta gene family. J Clin Invest 100:321–330 [PMC free article] [PubMed]
41. Huillard E, Laugier D, Marx M (2005) Defects in chicken neuroretina misexpressing the BMP antagonist Drm/Gremlin. Dev Biol 283:335–344 [PubMed] [Cross Ref]10.1016/j.ydbio.2005.04.027
42. Schedl A, Ross A, Lee M, Engelkamp D, Rashbass P, van Heyningen V, Hastie ND (1996) Influence of PAX6 gene dosage on development: overexpression causes severe eye abnormalities. Cell 86:71–82 [PubMed] [Cross Ref]10.1016/S0092-8674(00)80078-1
43. Smith RS, Zabaleta A, Kume T, Savinova OV, Kidson SH, Martin JE, Nishimura DY, Alward WL, Hogan BL, John SW (2000) Haploinsufficiency of the transcription factors FOXC1 and FOXC2 results in aberrant ocular development. Hum Mol Genet 9:1021–1032 [PubMed] [Cross Ref]10.1093/hmg/9.7.1021
44. Nishimura DY, Searby CC, Alward WL, Walton D, Craig JE, Mackey DA, Kawase K, Kanis AB, Patil SR, Stone EM, et al (2001) A spectrum of FOXC1 mutations suggests gene dosage as a mechanism for developmental defects of the anterior chamber of the eye. Am J Hum Genet 68:364–372 [PMC free article] [PubMed]
45. Lehmann OJ, Ebenezer ND, Ekong R, Ocaka L, Mungall AJ, Fraser S, McGill JI, Hitchings RA, Khaw PT, Sowden JC, et al (2002) Ocular developmental abnormalities and glaucoma associated with interstitial 6p25 duplications and deletions. Invest Ophthalmol Vis Sci 43:1843–1849 [PubMed]
46. Lehmann OJ, Ebenezer ND, Jordan T, Fox M, Ocaka L, Payne A, Leroy BP, Clark BJ, Hitchings RA, Povey S, et al (2000) Chromosomal duplication involving the forkhead transcription factor gene FOXC1 causes iris hypoplasia and glaucoma. Am J Hum Genet 67:1129–1135 [PMC free article] [PubMed]
47. Settle SH Jr, Rountree RB, Sinha A, Thacker A, Higgins K, Kingsley DM (2003) Multiple joint and skeletal patterning defects caused by single and double mutations in the mouse Gdf6 and Gdf5 genes. Dev Biol 254:116–130 [PubMed] [Cross Ref]10.1016/S0012-1606(02)00022-2
48. Brown DJ, Kim TB, Petty EM, Downs CA, Martin DM, Strouse PJ, Moroi SE, Milunsky JM, Lesperance MM (2002) Autosomal dominant stapes ankylosis with broad thumbs and toes, hyperopia, and skeletal anomalies is caused by heterozygous nonsense and frameshift mutations in NOG, the gene encoding noggin. Am J Hum Genet 71:618–624 [PMC free article] [PubMed]
49. Woodward KJ, Cundall M, Sperle K, Sistermans EA, Ross M, Howell G, Gribble SM, Burford DC, Carter NP, Hobson DL, et al (2005) Heterogeneous duplications in patients with Pelizaeus-Merzbacher disease suggest a mechanism of coupled homologous and nonhomologous recombination. Am J Hum Genet 77:966–987 [PMC free article] [PubMed]
50. Lee JA, Inoue K, Cheung SW, Shaw CA, Stankiewicz P, Lupski JR (2006) Role of genomic architecture in PLP1 duplication causing Pelizaeus-Merzbacher disease. Hum Mol Genet 15:2250–2265 [PubMed] [Cross Ref]10.1093/hmg/ddl150
51. Wadman M (2006) Medical research: them and us no longer. Nature 439:779–780 [PubMed] [Cross Ref]10.1038/439779a
52. Varki A, Holmes E, Yamada T, Agre P, Brenner S (2006) Physician-scientists are needed now more than ever. Nature 440:740 [PubMed] [Cross Ref]10.1038/440740b
53. Hanel ML, Hensey C (2006) Eye and neural defects associated with loss of GDF6. BMC Dev Biol 6:43 [PMC free article] [PubMed] [Cross Ref]10.1186/1471-213X-6-43

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