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pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model
Georg Neuberger, Georg Schneider, Frank Eisenhaber
Biol Direct. 2007; 2: 1. Published online 2007 January 12. doi: 10.1186/1745-6150-2-1
PMCID:
PMC1783638
Abstract Full Text PDF–1.1M

Is Cited by the Following 16 Articles in this Archive:

Palmitoylation Targets AKAP79 Protein to Lipid Rafts and Promotes Its Regulation of Calcium-sensitive Adenylyl Cyclase Type 8
Ilse Delint-Ramirez, Debbie Willoughby, Gerald V. R. Hammond, Laura J. Ayling, Dermot M. F. Cooper
J Biol Chem. 2011 September 23; 286(38): 32962–32975. Published online 2011 July 19. doi: 10.1074/jbc.M111.243899
PMCID:
PMC3190942
Abstract Full Text
Discovery of Protein Phosphorylation Motifs through Exploratory Data Analysis
Yi-Cheng Chen, Kripamoy Aguan, Chu-Wen Yang, Yao-Tsung Wang, Nikhil R. Pal, I-Fang Chung
PLoS One. 2011; 6(5): e20025. Published online 2011 May 25. doi: 10.1371/journal.pone.0020025
PMCID:
PMC3102080
Abstract Full Text PDF–588K Supplementary Material
Full-length cardiac Na+/Ca2+ exchanger 1 protein is not phosphorylated by protein kinase A
Pimthanya Wanichawan, William E. Louch, Kristin H. Hortemo, Bjørg Austbø, Per Kristian Lunde, John D. Scott, Ole M. Sejersted, Cathrine R. Carlson
Am J Physiol Cell Physiol. 2011 May; 300(5): C989–C997. Published online 2011 February 2. doi: 10.1152/ajpcell.00196.2010
PMCID:
PMC3093950
Abstract Full Text
The Musite open-source framework for phosphorylation-site prediction
Jianjiong Gao, Dong Xu
BMC Bioinformatics. 2010; 11(Suppl 12): S9. Published online 2010 December 21. doi: 10.1186/1471-2105-11-S12-S9
PMCID:
PMC3040535
Abstract Full Text PDF–752K
Two Serine Residues Control Sequential Steps during Catalysis of the Yeast Copper ATPase through Different Mechanisms That Involve Kinase-mediated Phosphorylations
Rafael H. F. Valverde, Thiago Britto-Borges, Jennifer Lowe, Marcelo Einicker-Lamas, Elisabeth Mintz, Martine Cuillel, Adalberto Vieyra
J Biol Chem. 2011 March 4; 286(9): 6879–6889. Published online 2010 December 16. doi: 10.1074/jbc.M110.207704
PMCID:
PMC3044943
Abstract Full Text
Phosphorylation and modulation of hyperpolarization-activated HCN4 channels by protein kinase A in the mouse sinoatrial node
Zhandi Liao, Dean Lockhead, Eric D. Larson, Catherine Proenza
J Gen Physiol. 2010 September; 136(3): 247–258. doi: 10.1085/jgp.201010488
PMCID:
PMC2931151
Abstract Full Text PDF–4.6M Supplementary Material
Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites
Jianjiong Gao, Jay J. Thelen, A. Keith Dunker, Dong Xu
Mol Cell Proteomics. 2010 December; 9(12): 2586–2600. Published online 2010 August 11. doi: 10.1074/mcp.M110.001388
PMCID:
PMC3101956
Abstract Full Text Supplementary Material
Characterization of Substrates That Have a Differential Effect on Saccharomyces cerevisiae Protein Kinase A Holoenzyme Activation
Fiorella Galello, Paula Portela, Silvia Moreno, Silvia Rossi
J Biol Chem. 2010 September 24; 285(39): 29770–29779. Published online 2010 July 16. doi: 10.1074/jbc.M110.120378
PMCID:
PMC2943320
Abstract Full Text Supplementary Material
Protein Kinase A Phosphorylation Activates Vpr-Induced Cell Cycle Arrest during Human Immunodeficiency Virus Type 1 Infection
R. Anthony Barnitz, Fengyi Wan, Vinay Tripuraneni, Diane L. Bolton, Michael J. Lenardo
J Virol. 2010 July; 84(13): 6410–6424. Published online 2010 April 14. doi: 10.1128/JVI.02273-09
PMCID:
PMC2903295
Abstract Full Text PDF–3.3M
Serine Dephosphorylation of Receptor Protein Tyrosine Phosphatase α in Mitosis Induces Src Binding and Activation
Andrei M. Vacaru, Jeroen den Hertog
Mol Cell Biol. 2010 June; 30(12): 2850–2861. Published online 2010 April 12. doi: 10.1128/MCB.01202-09
PMCID:
PMC2876684
Abstract Full Text PDF–1.5M
The Transient Receptor Potential Channel TRPM8 Is Inhibited via the α2A Adrenoreceptor Signaling Pathway
Alexis Bavencoffe, Dimitra Gkika, Artem Kondratskyi, Benjamin Beck, Anne-Sophie Borowiec, Gabriel Bidaux, Jérôme Busserolles, Alain Eschalier, Yaroslav Shuba, Roman Skryma, Natalia Prevarskaya
J Biol Chem. 2010 March 26; 285(13): 9410–9419. Published online 2010 January 28. doi: 10.1074/jbc.M109.069377
PMCID:
PMC2843190
Abstract Full Text Supplementary Material
Optimal Transactivation by Epstein-Barr Nuclear Antigen 1 Requires the UR1 and ATH1 Domains
Gyanendra Singh, Siddhesh Aras, Arnold H. Zea, Shahriar Koochekpour, Ashok Aiyar
J Virol. 2009 May; 83(9): 4227–4235. Published online 2009 February 25. doi: 10.1128/JVI.02578-08
PMCID:
PMC2668496
Abstract Full Text PDF–1.2M
Predicting Protein Post-translational Modifications Using Meta-analysis of Proteome Scale Data Sets
Daniel Schwartz, Michael F. Chou, George M. Church
Mol Cell Proteomics. 2009 February; 8(2): 365–379. doi: 10.1074/mcp.M800332-MCP200
PMCID:
PMC2634583
Abstract Full Text Supplementary Material
Prediction of kinase-specific phosphorylation sites using conditional random fields
Thanh Hai Dang, Koenraad Van Leemput, Alain Verschoren, Kris Laukens
Bioinformatics. 2008 December 15; 24(24): 2857–2864. Published online 2008 October 20. doi: 10.1093/bioinformatics/btn546
PMCID:
PMC2639296
Abstract Full Text PDF–645K Supplementary Material
GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy
Yu Xue, Jian Ren, Xinjiao Gao, Changjiang Jin, Longping Wen, Xuebiao Yao
Mol Cell Proteomics. 2008 September; 7(9): 1598–1608. doi: 10.1074/mcp.M700574-MCP200
PMCID:
PMC2528073
Abstract Full Text Supplementary Material
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites
Neil FW Saunders, Ross I Brinkworth, Thomas Huber, Bruce E Kemp, Bostjan Kobe
BMC Bioinformatics. 2008; 9: 245. Published online 2008 May 26. doi: 10.1186/1471-2105-9-245
PMCID:
PMC2412879
Abstract Full Text PDF–805K Supplementary Material
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