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pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model
Georg Neuberger, Georg Schneider, Frank Eisenhaber
Biol Direct. 2007; 2: 1. Published online 2007 January 12. doi: 10.1186/1745-6150-2-1
PMCID:
PMC1783638
Abstract Full Text PDF–1.1M
 Is Cited by the Following 15 Articles in this Archive:
Palmitoylation Targets AKAP79 Protein to Lipid Rafts and Promotes Its Regulation of Calcium-sensitive Adenylyl Cyclase Type 8
Ilse Delint-Ramirez, Debbie Willoughby, Gerald V. R. Hammond, Laura J. Ayling, Dermot M. F. Cooper
J Biol Chem. 2011 September 23; 286(38): 32962–32975. Published online 2011 July 19. doi: 10.1074/jbc.M111.243899
PMCID:
PMC3190942
Abstract Full Text
Discovery of Protein Phosphorylation Motifs through Exploratory Data Analysis
Yi-Cheng Chen, Kripamoy Aguan, Chu-Wen Yang, Yao-Tsung Wang, Nikhil R. Pal, I-Fang Chung
PLoS One. 2011; 6(5): e20025. Published online 2011 May 25. doi: 10.1371/journal.pone.0020025
PMCID:
PMC3102080
Abstract Full Text PDF–588K Supplementary Material
The Musite open-source framework for phosphorylation-site prediction
Jianjiong Gao, Dong Xu
BMC Bioinformatics. 2010; 11(Suppl 12): S9. Published online 2010 December 21. doi: 10.1186/1471-2105-11-S12-S9
PMCID:
PMC3040535
Abstract Full Text PDF–752K
Phosphorylation and modulation of hyperpolarization-activated HCN4 channels by protein kinase A in the mouse sinoatrial node
Zhandi Liao, Dean Lockhead, Eric D. Larson, Catherine Proenza
J Gen Physiol. 2010 September; 136(3): 247–258. doi: 10.1085/jgp.201010488
PMCID:
PMC2931151
Abstract Full Text PDF–4.6M Supplementary Material
Musite, a Tool for Global Prediction of General and Kinase-specific Phosphorylation Sites
Jianjiong Gao, Jay J. Thelen, A. Keith Dunker, Dong Xu
Mol Cell Proteomics. 2010 December; 9(12): 2586–2600. Published online 2010 August 11. doi: 10.1074/mcp.M110.001388
PMCID:
PMC3101956
Abstract Full Text Supplementary Material
Characterization of Substrates That Have a Differential Effect on Saccharomyces cerevisiae Protein Kinase A Holoenzyme Activation
Fiorella Galello, Paula Portela, Silvia Moreno, Silvia Rossi
J Biol Chem. 2010 September 24; 285(39): 29770–29779. Published online 2010 July 16. doi: 10.1074/jbc.M110.120378
PMCID:
PMC2943320
Abstract Full Text Supplementary Material
Protein Kinase A Phosphorylation Activates Vpr-Induced Cell Cycle Arrest during Human Immunodeficiency Virus Type 1 Infection
R. Anthony Barnitz, Fengyi Wan, Vinay Tripuraneni, Diane L. Bolton, Michael J. Lenardo
J Virol. 2010 July; 84(13): 6410–6424. Published online 2010 April 14. doi: 10.1128/JVI.02273-09
PMCID:
PMC2903295
Abstract Full Text PDF–3.3M
Serine Dephosphorylation of Receptor Protein Tyrosine Phosphatase α in Mitosis Induces Src Binding and Activation
Andrei M. Vacaru, Jeroen den Hertog
Mol Cell Biol. 2010 June; 30(12): 2850–2861. Published online 2010 April 12. doi: 10.1128/MCB.01202-09
PMCID:
PMC2876684
Abstract Full Text PDF–1.5M
The Transient Receptor Potential Channel TRPM8 Is Inhibited via the α2A Adrenoreceptor Signaling Pathway
Alexis Bavencoffe, Dimitra Gkika, Artem Kondratskyi, Benjamin Beck, Anne-Sophie Borowiec, Gabriel Bidaux, Jérôme Busserolles, Alain Eschalier, Yaroslav Shuba, Roman Skryma, Natalia Prevarskaya
J Biol Chem. 2010 March 26; 285(13): 9410–9419. Published online 2010 January 28. doi: 10.1074/jbc.M109.069377
PMCID:
PMC2843190
Abstract Full Text Supplementary Material
Optimal Transactivation by Epstein-Barr Nuclear Antigen 1 Requires the UR1 and ATH1 Domains
Gyanendra Singh, Siddhesh Aras, Arnold H. Zea, Shahriar Koochekpour, Ashok Aiyar
J Virol. 2009 May; 83(9): 4227–4235. Published online 2009 February 25. doi: 10.1128/JVI.02578-08
PMCID:
PMC2668496
Abstract Full Text PDF–1.2M
Predicting Protein Post-translational Modifications Using Meta-analysis of Proteome Scale Data Sets
Daniel Schwartz, Michael F. Chou, George M. Church
Mol Cell Proteomics. 2009 February; 8(2): 365–379. doi: 10.1074/mcp.M800332-MCP200
PMCID:
PMC2634583
Abstract Full Text Supplementary Material
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants
Jianjiong Gao, Ganesh Kumar Agrawal, Jay J. Thelen, Zoran Obradovic, A. Keith Dunker, Dong Xu
Lect Notes Comput Sci. Author manuscript; available in PMC 2009 August 7.
Published in final edited form as: Lect Notes Comput Sci. 2009; 5462/2009: 18–29. doi: 10.1007/978-3-642-00727-9_4
PMCID:
PMC2722914
Abstract Full Text PDF–913K
Prediction of kinase-specific phosphorylation sites using conditional random fields
Thanh Hai Dang, Koenraad Van Leemput, Alain Verschoren, Kris Laukens
Bioinformatics. 2008 December 15; 24(24): 2857–2864. Published online 2008 October 20. doi: 10.1093/bioinformatics/btn546
PMCID:
PMC2639296
Abstract Full Text PDF–645K Supplementary Material
GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy
Yu Xue, Jian Ren, Xinjiao Gao, Changjiang Jin, Longping Wen, Xuebiao Yao
Mol Cell Proteomics. 2008 September; 7(9): 1598–1608. doi: 10.1074/mcp.M700574-MCP200
PMCID:
PMC2528073
Abstract Full Text Supplementary Material
Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites
Neil FW Saunders, Ross I Brinkworth, Thomas Huber, Bruce E Kemp, Bostjan Kobe
BMC Bioinformatics. 2008; 9: 245. Published online 2008 May 26. doi: 10.1186/1471-2105-9-245
PMCID:
PMC2412879
Abstract Full Text PDF–805K Supplementary Material
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