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Zebrafish promoter microarrays identify actively transcribed embryonic genes
Fiona C Wardle, Duncan T Odom, George W Bell, Bingbing Yuan, Timothy W Danford, Elizabeth L Wiellette, Elizabeth Herbolsheimer, Hazel L Sive, Richard A Young, James C Smith
Genome Biol. 2006; 7(8): R71. Published online 2006 August 4. doi: 10.1186/gb-2006-7-8-r71
PMCID:
PMC1779600
Abstract Full Text PDF–1.1M Supplementary Material

Is Cited by the Following 15 Articles in this Archive:

Reproductive and Developmental Toxicity of Dioxin in Fish
Tisha C. King-Heiden, Vatsal Mehta, Kong M. Xiong, Kevin A. Lanham, Dagmara S. Antkiewicz, Alissa Ganser, Warren Heideman, Richard E. Peterson
Mol Cell Endocrinol. Author manuscript; available in PMC 2013 May 6.
Published in final edited form as: Mol Cell Endocrinol. 2012 May 6; 354(1-2): 121–138. Published online 2011 September 21. doi: 10.1016/j.mce.2011.09.027
PMCID:
PMC3306500
Free in PMC on 2013/05/06
Global Identification of SMAD2 Target Genes Reveals a Role for Multiple Co-regulatory Factors in Zebrafish Early Gastrulas
Zhaoting Liu, Xiwen Lin, Zhaoping Cai, Zhuqiang Zhang, Chunsheng Han, Shunji Jia, Anming Meng, Qiang Wang
J Biol Chem. 2011 August 12; 286(32): 28520–28532. Published online 2011 June 13. doi: 10.1074/jbc.M111.236307
PMCID:
PMC3151094
Abstract Full Text Supplementary Material
Genes for embryo development are packaged in blocks of multivalent chromatin in zebrafish sperm
Shan-Fu Wu, Haiying Zhang, Bradley R. Cairns
Genome Res. 2011 April; 21(4): 578–589. doi: 10.1101/gr.113167.110
PMCID:
PMC3065705
Abstract Full Text PDF–1.1M
Identification of cis regulatory features in the embryonic zebrafish genome through large-scale profiling of H3K4me1 and H3K4me3 binding sites
Aaron W. Aday, Lihua Julie Zhu, Abirami Lakshmanan, Jie Wang, Nathan D. Lawson
Dev Biol. Author manuscript; available in PMC 2012 September 15.
Published in final edited form as: Dev Biol. 2011 September 15; 357(2): 450–462. Published online 2011 March 22. doi: 10.1016/j.ydbio.2011.03.007
PMCID:
PMC3273848
Free in PMC on 2012/09/15
Comprehensive profiling of zebrafish hepatic proximal promoter CpG island methylation and its modification during chemical carcinogenesis
Leda Mirbahai, Timothy D Williams, Huiqing Zhan, Zhiyuan Gong, J Kevin Chipman
BMC Genomics. 2011; 12: 3. Published online 2011 January 4. doi: 10.1186/1471-2164-12-3
PMCID:
PMC3027158
Abstract Full Text PDF–2.9M Supplementary Material
Tiling Histone H3 Lysine 4 and 27 Methylation in Zebrafish Using High-Density Microarrays
Leif C. Lindeman, Andrew H. Reiner, Sinnakaruppan Mathavan, Peter Aleström, Philippe Collas
PLoS One. 2010; 5(12): e15651. Published online 2010 December 20. doi: 10.1371/journal.pone.0015651
PMCID:
PMC3004928
Abstract Full Text PDF–2.2M Supplementary Material
B1 SOX Coordinate Cell Specification with Patterning and Morphogenesis in the Early Zebrafish Embryo
Yuichi Okuda, Eri Ogura, Hisato Kondoh, Yusuke Kamachi
PLoS Genet. 2010 May; 6(5): e1000936. Published online 2010 May 6. doi: 10.1371/journal.pgen.1000936
PMCID:
PMC2865518
Abstract Full Text PDF–15M Supplementary Material
Chromatin signature of embryonic pluripotency is established during genome activation
Nadine L. Vastenhouw, Yong Zhang, Ian G. Woods, Farhad Imam, Aviv Regev, X. Shirley Liu, John Rinn, Alexander F. Schier
Nature. Author manuscript; available in PMC 2011 April 8.
Published in final edited form as: Nature. 2010 April 8; 464(7290): 922–926. Published online 2010 March 24. doi: 10.1038/nature08866
PMCID:
PMC2874748
Abstract Full Text PDF–922K Supplementary Material
ChIP-Chip Designs to Interrogate the Genome of Xenopus Embryos for Transcription Factor Binding and Epigenetic Regulation
Robert C. Akkers, Simon J. van Heeringen, J. Robert Manak, Roland D. Green, Hendrik G. Stunnenberg, Gert Jan C. Veenstra
PLoS One. 2010; 5(1): e8820. Published online 2010 January 21. doi: 10.1371/journal.pone.0008820
PMCID:
PMC2809088
Abstract Full Text PDF–428K Supplementary Material
A gene regulatory network directed by zebrafish No tail accounts for its roles in mesoderm formation
Rosalind H. Morley, Kim Lachani, Damian Keefe, Michael J. Gilchrist, Paul Flicek, James C. Smith, Fiona C. Wardle
Proc Natl Acad Sci U S A. 2009 March 10; 106(10): 3829–3834. Published online 2009 February 18. doi: 10.1073/pnas.0808382106
PMCID:
PMC2656165
Abstract Full Text PDF–952K Supplementary Material
Fast genomic μChIP-chip from 1,000 cells
John Arne Dahl, Andrew H Reiner, Philippe Collas
Genome Biol. 2009; 10(2): R13. Published online 2009 February 10. doi: 10.1186/gb-2009-10-2-r13
PMCID:
PMC2688267
Abstract Full Text PDF–924K Supplementary Material
Identification of direct T-box target genes in the developing zebrafish mesoderm
Aaron T. Garnett, Tina M. Han, Michael J. Gilchrist, James C. Smith, Michael B. Eisen, Fiona C. Wardle, Sharon L. Amacher
Development. 2009 March 1; 136(5): 749–760. Published online 2009 January 21. doi: 10.1242/dev.024703
PMCID:
PMC2685943
Abstract Full Text Supplementary Material
Prdm1- and Sox6-mediated transcriptional repression specifies muscle fibre type in the zebrafish embryo
Jonas von Hofsten, Stone Elworthy, Michael J Gilchrist, James C Smith, Fiona C Wardle, Philip W Ingham
EMBO Rep. 2008 July; 9(7): 683–689. Published online 2008 June 6. doi: 10.1038/embor.2008.73
PMCID:
PMC2424280
Abstract Full Text PDF–330K Supplementary Material
Transcriptomic Analyses Reveal Novel Genes with Sexually Dimorphic Expression in the Zebrafish Gonad and Brain
Rajini Sreenivasan, Minnie Cai, Richard Bartfai, Xingang Wang, Alan Christoffels, Laszlo Orban
PLoS ONE. 2008; 3(3): e1791. Published online 2008 March 12. doi: 10.1371/journal.pone.0001791
PMCID:
PMC2262149
Abstract Full Text PDF–568K Supplementary Material
Decoding Development in Xenopus tropicalis
Chris Showell, Frank L. Conlon
Genesis. Author manuscript; available in PMC 2009 April 13.
Published in final edited form as: Genesis. 2007 June; 45(6): 418–426. doi: 10.1002/dvg.20286
PMCID:
PMC2668205
Abstract Full Text PDF–1.0M
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