My NCBISign In
Sex-specific expression of alternative transcripts in Drosophila
Lauren M McIntyre, Lisa M Bono, Anne Genissel, Rick Westerman, Damion Junk, Marina Telonis-Scott, Larry Harshman, Marta L Wayne, Artyom Kopp, Sergey V Nuzhdin
Genome Biol. 2006; 7(8): R79. Published online 2006 August 25. doi: 10.1186/gb-2006-7-8-r79
PMCID:
PMC1779584
Abstract Full Text PDF–435K Supplementary Material

Is Cited by the Following 21 Articles in this Archive:

Rate of Amino Acid Substitution Is Influenced by the Degree and Conservation of Male-Biased Transcription Over 50 Myr of Drosophila Evolution
Sonja Grath, John Parsch
Genome Biol Evol. 2012; 4(3): 346–359. Published online 2012 February 8. doi: 10.1093/gbe/evs012
PMCID:
PMC3318448
Abstract Full Text PDF–654K
Allelic Imbalance in Drosophila Hybrid Heads: Exons, Isoforms, and Evolution
R. M. Graze, L. L. Novelo, V. Amin, J. M. Fear, G. Casella, S. V. Nuzhdin, L. M. McIntyre
Mol Biol Evol. 2012 June; 29(6): 1521–1532. Published online 2012 January 7. doi: 10.1093/molbev/msr318
PMCID:
PMC3351786
Free in PMC on 2013/06/01
Generalized shrinkage F-like statistics for testing an interaction term in gene expression analysis in the presence of heteroscedasticity
Jie Yang, George Casella, Lauren M McIntyre
BMC Bioinformatics. 2011; 12: 427. Published online 2011 November 1. doi: 10.1186/1471-2105-12-427
PMCID:
PMC3221690
Abstract Full Text PDF–680K Supplementary Material
Partitioning Transcript Variation in Drosophila: Abundance, Isoforms, and Alleles
Yajie Yang, Rita M. Graze, Brandon M. Walts, Cecilia M. Lopez, Henry V. Baker, Marta L. Wayne, Sergey V. Nuzhdin, Lauren M. McIntyre
G3 (Bethesda) 2011 November; 1(6): 427–436. Published online 2011 November 1. doi: 10.1534/g3.111.000596
PMCID:
PMC3276160
Abstract Full Text PDF–1.3M
De Novo Assembly of the Manila Clam Ruditapes philippinarum Transcriptome Provides New Insights into Expression Bias, Mitochondrial Doubly Uniparental Inheritance and Sex Determination
Fabrizio Ghiselli, Liliana Milani, Peter L. Chang, Dennis Hedgecock, Jonathan P. Davis, Sergey V. Nuzhdin, Marco Passamonti
Mol Biol Evol. 2012 February; 29(2): 771–786. Published online 2011 October 5. doi: 10.1093/molbev/msr248
PMCID:
PMC3258041
Free in PMC on 2013/02/01
Differential gene expression in male and female rainbow trout embryos prior to the onset of gross morphological differentiation of the gonads
Matthew C Hale, Peng Xu, Julie Scardina, Paul A Wheeler, Gary H Thorgaard, Krista M Nichols
BMC Genomics. 2011; 12: 404. Published online 2011 August 8. doi: 10.1186/1471-2164-12-404
PMCID:
PMC3166948
Abstract Full Text PDF–3.0M Supplementary Material
Somatic sex-specific transcriptome differences in Drosophila revealed by whole transcriptome sequencing
Peter L Chang, Joseph P Dunham, Sergey V Nuzhdin, Michelle N Arbeitman
BMC Genomics. 2011; 12: 364. Published online 2011 July 14. doi: 10.1186/1471-2164-12-364
PMCID:
PMC3152543
Abstract Full Text PDF–4.5M Supplementary Material
Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster
Britta Hartmann, Robert Castelo, Belén Miñana, Erin Peden, Marco Blanchette, Donald C. Rio, Ravinder Singh, Juan Valcárcel
RNA. 2011 March; 17(3): 453–468. doi: 10.1261/rna.2460411
PMCID:
PMC3039145
Abstract Full Text PDF–1.0M
The Resolution of Sexual Antagonism by Gene Duplication
Tim Connallon, Andrew G. Clark
Genetics. 2011 March; 187(3): 919–937. doi: 10.1534/genetics.110.123729
PMCID:
PMC3063682
Abstract Full Text PDF–872K
Association between Sex-Biased Gene Expression and Mutations with Sex-Specific Phenotypic Consequences in Drosophila
Tim Connallon, Andrew G. Clark
Genome Biol Evol. 2011; 3: 151–155. Published online 2011 February 2. doi: 10.1093/gbe/evr004
PMCID:
PMC3048362
Abstract Full Text PDF–161K
Transcriptome Analysis of the Brown Planthopper Nilaparvata lugens
Jian Xue, Yan-Yuan Bao, Bao-ling Li, Yan-Bing Cheng, Zhi-Yu Peng, Hang Liu, Hai-Jun Xu, Zeng-Rong Zhu, Yong-Gen Lou, Jia-An Cheng, Chuan-Xi Zhang
PLoS One. 2010; 5(12): e14233. Published online 2010 December 6. doi: 10.1371/journal.pone.0014233
PMCID:
PMC2997790
Abstract Full Text PDF–1.6M Supplementary Material
Dynamic regulation of alternative splicing and chromatin structure in Drosophila gonads revealed by RNA-seq
Qiang Gan, Iouri Chepelev, Gang Wei, Lama Tarayrah, Kairong Cui, Keji Zhao, Xin Chen
Cell Res. Author manuscript; available in PMC 2011 January 1.
Published in final edited form as: Cell Res. 2010 July; 20(7): 763–783. Published online 2010 May 4. doi: 10.1038/cr.2010.64
PMCID:
PMC2919574
Abstract Full Text PDF–3.1M Supplementary Material
Sex-specific population structure, natural selection, and linkage disequilibrium in a wild bird population as revealed by genome-wide microsatellite analyses
Meng-Hua Li, Juha Merilä
BMC Evol Biol. 2010; 10: 66. Published online 2010 March 8. doi: 10.1186/1471-2148-10-66
PMCID:
PMC2846931
Abstract Full Text PDF–1.0M
Resolving Intralocus Sexual Conflict: Genetic Mechanisms and Time Frame
Andrew D. Stewart, Alison Pischedda, William R. Rice
J Hered. 2010 Mar-Apr; 101(suppl_1): S94–S99. doi: 10.1093/jhered/esq011
PMCID:
PMC2859891
Abstract Full Text PDF–101K
Sex-specific and lineage-specific alternative splicing in primates
Ran Blekhman, John C. Marioni, Paul Zumbo, Matthew Stephens, Yoav Gilad
Genome Res. 2010 February; 20(2): 180–189. doi: 10.1101/gr.099226.109
PMCID:
PMC2813474
Abstract Full Text PDF–788K
Evolution of Sex-Dependent Gene Expression in Three Recently Diverged Species of Drosophila
Zi-Feng Jiang, Carlos A. Machado
Genetics. 2009 November; 183(3): 1175–1185. doi: 10.1534/genetics.109.105775
PMCID:
PMC2778969
Abstract Full Text PDF–1.0M
Genome-Wide Identification of Alternative Splice Forms Down-Regulated by Nonsense-Mediated mRNA Decay in Drosophila
Kasper Daniel Hansen, Liana F. Lareau, Marco Blanchette, Richard E. Green, Qi Meng, Jan Rehwinkel, Fabian L. Gallusser, Elisa Izaurralde, Donald C. Rio, Sandrine Dudoit, Steven E. Brenner
PLoS Genet. 2009 June; 5(6): e1000525. Published online 2009 June 19. doi: 10.1371/journal.pgen.1000525
PMCID:
PMC2689934
Abstract Full Text PDF–539K Supplementary Material
Natural genetic variation in transcriptome reflects network structure inferred with major effect mutations: insulin/TOR and associated phenotypes in Drosophila melanogaster
Sergey V Nuzhdin, Jennifer A Brisson, Andrew Pickering, Marta L Wayne, Lawrence G Harshman, Lauren M McIntyre
BMC Genomics. 2009; 10: 124. Published online 2009 March 24. doi: 10.1186/1471-2164-10-124
PMCID:
PMC2674066
Abstract Full Text PDF–671K Supplementary Material
Sex-Specific Splicing in Drosophila: Widespread Occurrence, Tissue Specificity and Evolutionary Conservation
Marina Telonis-Scott, Artyom Kopp, Marta L. Wayne, Sergey V. Nuzhdin, Lauren M. McIntyre
Genetics. 2009 February; 181(2): 421–434. doi: 10.1534/genetics.108.096743
PMCID:
PMC2644937
Abstract Full Text PDF–281K
Pervasive Sex-Linked Effects on Transcription Regulation As Revealed by Expression Quantitative Trait Loci Mapping in Lake Whitefish Species Pairs (Coregonus sp., Salmonidae)
N. Derome, B. Bougas, S. M. Rogers, A. R. Whiteley, A. Labbe, J. Laroche, L. Bernatchez
Genetics. 2008 August; 179(4): 1903–1917. doi: 10.1534/genetics.107.086306
PMCID:
PMC2516068
Abstract Full Text PDF–378K
Simpler mode of inheritance of transcriptional variation in male Drosophila melanogaster
Marta L. Wayne, Marina Telonis-Scott, Lisa M. Bono, Larry Harshman, Artyom Kopp, Sergey V. Nuzhdin, Lauren M. McIntyre
Proc Natl Acad Sci U S A. 2007 November 20; 104(47): 18577–18582. Published online 2007 November 14. doi: 10.1073/pnas.0705441104
PMCID:
PMC2141819
Abstract Full Text PDF–538K Supplementary Material
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