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The cnidarian-bilaterian ancestor possessed at least 56 homeoboxes: evidence from the starlet sea anemone, Nematostella vectensis
Joseph F Ryan, Patrick M Burton, Maureen E Mazza, Grace K Kwong, James C Mullikin, John R Finnerty
Genome Biol. 2006; 7(7): R64. Published online 2006 July 24. doi: 10.1186/gb-2006-7-7-r64
PMCID:
PMC1779571
Abstract Full Text PDF–788K Supplementary Material

Is Cited by the Following 23 Articles in this Archive:

Diversity, Phylogeny and Expression Patterns of Pou and Six Homeodomain Transcription Factors in Hydrozoan Jellyfish Craspedacusta sowerbyi
Miluse Hroudova, Petr Vojta, Hynek Strnad, Zdenek Krejcik, Jakub Ridl, Jan Paces, Cestmir Vlcek, Vaclav Paces
PLoS One. 2012; 7(4): e36420. Published online 2012 April 30. doi: 10.1371/journal.pone.0036420
PMCID:
PMC3340352
Abstract Full Text PDF–537K Supplementary Material
A Novel N-Terminal Domain May Dictate the Glucose Response of Mondo Proteins
Lisa G. McFerrin, William R. Atchley
PLoS One. 2012; 7(4): e34803. Published online 2012 April 10. doi: 10.1371/journal.pone.0034803
PMCID:
PMC3323566
Abstract Full Text PDF–1.4M Supplementary Material
Annelid Distal-less/Dlx duplications reveal varied post-duplication fates
Carmel McDougall, Natalia Korchagina, Jonathan L Tobin, David EK Ferrier
BMC Evol Biol. 2011; 11: 241. Published online 2011 August 16. doi: 10.1186/1471-2148-11-241
PMCID:
PMC3199776
Abstract Full Text PDF–3.1M Supplementary Material
Evolution of the Alx homeobox gene family: parallel retention and independent loss of the vertebrate Alx3 gene
Imelda M McGonnell, Anthony Graham, Joanna Richardson, Jennifer L Fish, Michael J Depew, Chris T Dee, Peter WH Holland, Tokiharu Takahashi
Evol Dev. 2011 July; 13(4): 343–351. doi: 10.1111/j.1525-142X.2011.00489.x
PMCID:
PMC3166657
Abstract Full Text PDF–791K
The dynamics of vertebrate homeobox gene evolution: gain and loss of genes in mouse and human lineages
Ying-fu Zhong, Peter WH Holland
BMC Evol Biol. 2011; 11: 169. Published online 2011 June 16. doi: 10.1186/1471-2148-11-169
Correction in:
BMC Evol Biol. 2011; 11: 204.
PMCID:
PMC3141429
Abstract Full Text PDF–1.6M Supplementary Material Correction
The homeodomain complement of the ctenophore Mnemiopsis leidyi suggests that Ctenophora and Porifera diverged prior to the ParaHoxozoa
Joseph F Ryan, Kevin Pang, James C Mullikin, Mark Q Martindale, Andreas D Baxevanis
EvoDevo. 2010; 1: 9. Published online 2010 October 4. doi: 10.1186/2041-9139-1-9
PMCID:
PMC2959044
Abstract Full Text PDF–1.0M Supplementary Material
Duplicate dmbx1 genes regulate progenitor cell cycle and differentiation during zebrafish midbrain and retinal development
Loksum Wong, Cameron J Weadick, Claire Kuo, Belinda SW Chang, Vincent Tropepe
BMC Dev Biol. 2010; 10: 100. Published online 2010 September 22. doi: 10.1186/1471-213X-10-100
PMCID:
PMC2954992
Abstract Full Text PDF–1.7M Supplementary Material
A conserved cluster of three PRD-class homeobox genes (homeobrain, rx and orthopedia) in the Cnidaria and Protostomia
Maureen E Mazza, Kevin Pang, Adam M Reitzel, Mark Q Martindale, John R Finnerty
EvoDevo. 2010; 1: 3. Published online 2010 July 5. doi: 10.1186/2041-9139-1-3
PMCID:
PMC2938728
Abstract Full Text PDF–1.4M Supplementary Material
Ancient homeobox gene loss and the evolution of chordate brain and pharynx development: deductions from amphioxus gene expression
Thomas Butts, Peter W. H. Holland, David E. K. Ferrier
Proc Biol Sci. 2010 November 22; 277(1699): 3381–3389. Published online 2010 June 16. doi: 10.1098/rspb.2010.0647
PMCID:
PMC2982225
Abstract Full Text PDF–781K
A non-tree-based comprehensive study of metazoan Hox and ParaHox genes prompts new insights into their origin and evolution
Morgane Thomas-Chollier, Valérie Ledent, Luc Leyns, Michel Vervoort
BMC Evol Biol. 2010; 10: 73. Published online 2010 March 11. doi: 10.1186/1471-2148-10-73
PMCID:
PMC2842273
Abstract Full Text PDF–1.0M Supplementary Material
Early evolution of the LIM homeobox gene family
Mansi Srivastava, Claire Larroux, Daniel R Lu, Kareshma Mohanty, Jarrod Chapman, Bernard M Degnan, Daniel S Rokhsar
BMC Biol. 2010; 8: 4. Published online 2010 January 18. doi: 10.1186/1741-7007-8-4
PMCID:
PMC2828406
Abstract Full Text PDF–752K Supplementary Material
Early origin of the bilaterian developmental toolkit
Douglas H. Erwin
Philos Trans R Soc Lond B Biol Sci. 2009 August 12; 364(1527): 2253–2261. doi: 10.1098/rstb.2009.0038
PMCID:
PMC2873006
Abstract Full Text PDF–484K
The Homeodomain Resource: a comprehensive collection of sequence, structure, interaction, genomic and functional information on the homeodomain protein family
R. Travis Moreland, Joseph F. Ryan, Christopher Pan, Andreas D. Baxevanis
Database (Oxford) 2009; 2009: bap004. Published online 2009 April 17. doi: 10.1093/database/bap004
PMCID:
PMC2790301
Abstract Full Text PDF–767K
Are Hox Genes Ancestrally Involved in Axial Patterning? Evidence from the Hydrozoan Clytia hemisphaerica (Cnidaria)
Roxane Chiori, Muriel Jager, Elsa Denker, Patrick Wincker, Corinne Da Silva, Hervé Le Guyader, Michaël Manuel, Eric Quéinnec
PLoS ONE. 2009; 4(1): e4231. Published online 2009 January 21. doi: 10.1371/journal.pone.0004231
PMCID:
PMC2626245
Abstract Full Text PDF–1.3M Supplementary Material
Domain duplication, divergence, and loss events in vertebrate Msx paralogs reveal phylogenomically informed disease markers
John R Finnerty, Maureen E Mazza, Peter A Jezewski
BMC Evol Biol. 2009; 9: 18. Published online 2009 January 20. doi: 10.1186/1471-2148-9-18
PMCID:
PMC2655272
Abstract Full Text PDF–3.0M Supplementary Material
Are we degenerate tetraploids? More genomes, new facts
Amir Ali Abbasi
Biol Direct. 2008; 3: 50. Published online 2008 December 10. doi: 10.1186/1745-6150-3-50
PMCID:
PMC2615429
Abstract Full Text PDF–319K
Evolution of Genome Architecture
Eugene V. Koonin
Int J Biochem Cell Biol. Author manuscript; available in PMC 2012 February 6.
Published in final edited form as: Int J Biochem Cell Biol. 2009 February; 41(2): 298–306. Published online 2008 September 26. doi: 10.1016/j.biocel.2008.09.015
PMCID:
PMC3272702
Abstract Full Text PDF–220K
The Early ANTP Gene Repertoire: Insights from the Placozoan Genome
Bernd Schierwater, Kai Kamm, Mansi Srivastava, Daniel Rokhsar, Rafael D. Rosengarten, Stephen L. Dellaporta
PLoS ONE. 2008; 3(8): e2457. Published online 2008 August 21. doi: 10.1371/journal.pone.0002457
PMCID:
PMC2515636
Abstract Full Text PDF–177K Supplementary Material
Evolution of hedgehog and hedgehog-related genes, their origin from Hog proteins in ancestral eukaryotes and discovery of a novel Hint motif
Thomas R Bürglin
BMC Genomics. 2008; 9: 127. Published online 2008 March 11. doi: 10.1186/1471-2164-9-127
PMCID:
PMC2362128
Abstract Full Text PDF–1.1M Supplementary Material
Acoel development supports a simple planula-like urbilaterian
Andreas Hejnol, Mark Q Martindale
Philos Trans R Soc Lond B Biol Sci. 2008 April 27; 363(1496): 1493–1501. Published online 2008 January 11. doi: 10.1098/rstb.2007.2239
PMCID:
PMC2614228
Abstract Full Text PDF–430K
Classification and nomenclature of all human homeobox genes
Peter WH Holland, H Anne F Booth, Elspeth A Bruford
BMC Biol. 2007; 5: 47. Published online 2007 October 26. doi: 10.1186/1741-7007-5-47
PMCID:
PMC2211742
Abstract Full Text PDF–774K Supplementary Material
The innate immune repertoire in Cnidaria - ancestral complexity and stochastic gene loss
David J Miller, Georg Hemmrich, Eldon E Ball, David C Hayward, Konstantin Khalturin, Noriko Funayama, Kiyokazu Agata, Thomas CG Bosch
Genome Biol. 2007; 8(4): R59. Published online 2007 April 16. doi: 10.1186/gb-2007-8-4-r59
PMCID:
PMC1896004
Abstract Full Text PDF–1.0M Supplementary Material
Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics
Elena Simionato, Valérie Ledent, Gemma Richards, Morgane Thomas-Chollier, Pierre Kerner, David Coornaert, Bernard M Degnan, Michel Vervoort
BMC Evol Biol. 2007; 7: 33. Published online 2007 March 2. doi: 10.1186/1471-2148-7-33
PMCID:
PMC1828162
Abstract Full Text PDF–665K Supplementary Material
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