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Detecting transcriptionally active regions using genomic tiling arrays
Gabor Halasz, Marinus F van Batenburg, Joelle Perusse, Sujun Hua, Xiang-Jun Lu, Kevin P White, Harmen J Bussemaker
Genome Biol. 2006; 7(7): R59. Published online 2006 July 19. doi: 10.1186/gb-2006-7-7-r59
PMCID:
PMC1779562
Abstract Full Text PDF–452K Supplementary Material

Is Cited by the Following 12 Articles in this Archive:

Evidence-Based Annotation of Transcripts and Proteins in the Sulfate-Reducing Bacterium Desulfovibrio vulgaris Hildenborough
Morgan N. Price, Adam M. Deutschbauer, Jennifer V. Kuehl, Haichuan Liu, H. Ewa Witkowska, Adam P. Arkin
J Bacteriol. 2011 October; 193(20): 5716–5727. doi: 10.1128/JB.05563-11
PMCID:
PMC3187205
Abstract Full Text PDF–4.7M Supplementary Material
Structural and operational complexity of the Geobacter sulfurreducens genome
Yu Qiu, Byung-Kwan Cho, Young Seoub Park, Derek Lovley, Bernhard Ø. Palsson, Karsten Zengler
Genome Res. 2010 September; 20(9): 1304–1311. doi: 10.1101/gr.107540.110
PMCID:
PMC2928509
Abstract Full Text PDF–650K
Identification of novel non-coding small RNAs from Streptococcus pneumoniae TIGR4 using high-resolution genome tiling arrays
Ranjit Kumar, Pratik Shah, Edwin Swiatlo, Shane C Burgess, Mark L Lawrence, Bindu Nanduri
BMC Genomics. 2010; 11: 350. Published online 2010 June 3. doi: 10.1186/1471-2164-11-350
PMCID:
PMC2887815
Abstract Full Text PDF–1.3M Supplementary Material
TiArA: A Virtual Appliance for the Analysis of Tiling Array Data
Jason A. Greenbaum, Erika Assarsson, Jo L. Chung, Steven Head, Alessandro Sette, Bjoern Peters
PLoS One. 2010; 5(4): e9993. Published online 2010 April 1. doi: 10.1371/journal.pone.0009993
PMCID:
PMC2848623
Abstract Full Text PDF–735K Supplementary Material
An Integrated Mass-Spectrometry Pipeline Identifies Novel Protein Coding-Regions in the Human Genome
Danny A. Bitton, Duncan L. Smith, Yvonne Connolly, Paul J. Scutt, Crispin J. Miller
PLoS One. 2010; 5(1): e8949. Published online 2010 January 28. doi: 10.1371/journal.pone.0008949
PMCID:
PMC2812506
Abstract Full Text PDF–378K Supplementary Material
Detection of intergenic non-coding RNAs expressed in the main developmental stages in Drosophila melanogaster
Zheng Li, Min Liu, Li Zhang, Wenxia Zhang, Ge Gao, Zuoyan Zhu, Liping Wei, Qichang Fan, Manyuan Long
Nucleic Acids Res. 2009 July; 37(13): 4308–4314. Published online 2009 July. doi: 10.1093/nar/gkp334
PMCID:
PMC2715228
Abstract Full Text PDF–1.5M Supplementary Material
Highly Diversified Molecular Evolution of Downstream Transcription Start Sites in Rice and Arabidopsis
Tsuyoshi Tanaka, Kanako O. Koyanagi, Takeshi Itoh
Plant Physiol. 2009 March; 149(3): 1316–1324. doi: 10.1104/pp.108.131656
PMCID:
PMC2649393
Abstract Full Text PDF–529K Supplementary Material
SigWin-detector: a Grid-enabled workflow for discovering enriched windows of genomic features related to DNA sequences
Márcia A Inda, Marinus F van Batenburg, Marco Roos, Adam SZ Belloum, Dmitry Vasunin, Adianto Wibisono, Antoine HC van Kampen, Timo M Breit
BMC Res Notes. 2008; 1: 63. Published online 2008 August 8. doi: 10.1186/1756-0500-1-63
PMCID:
PMC2533338
Abstract Full Text PDF–1.7M Supplementary Material
Genomic Resources for Invertebrate Vectors of Human Pathogens, and the role of VectorBase
K. Megy, M. Hammond, D. Lawson, R.V. Bruggner, E. Birney, F.H. Collins
Infect Genet Evol. Author manuscript; available in PMC 2010 May 1.
Published in final edited form as: Infect Genet Evol. 2009 May; 9(3): 308–313. Published online 2008 January 3. doi: 10.1016/j.meegid.2007.12.007
PMCID:
PMC2720521
Abstract Full Text PDF–242K
Normalization and experimental design for ChIP-chip data
Shouyong Peng, Artyom A Alekseyenko, Erica Larschan, Mitzi I Kuroda, Peter J Park
BMC Bioinformatics. 2007; 8: 219. Published online 2007 June 25. doi: 10.1186/1471-2105-8-219
PMCID:
PMC1913544
Abstract Full Text PDF–1.3M
Tilescope: online analysis pipeline for high-density tiling microarray data
Zhengdong D Zhang, Joel Rozowsky, Hugo YK Lam, Jiang Du, Michael Snyder, Mark Gerstein
Genome Biol. 2007; 8(5): R81. Published online 2007 May 14. doi: 10.1186/gb-2007-8-5-r81
PMCID:
PMC1929149
Abstract Full Text PDF–473K Supplementary Material
Genome-wide identification of spliced introns using a tiling microarray
Zhihong Zhang, Jay R. Hesselberth, Stanley Fields
Genome Res. 2007 April; 17(4): 503–509. doi: 10.1101/gr.6049107
PMCID:
PMC1832097
Abstract Full Text PDF–537K
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