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A steganalysis-based approach to comprehensive identification and characterization of functional regulatory elements
Guandong Wang, Weixiong Zhang
Genome Biol. 2006; 7(6): R49. Published online 2006 June 20. doi: 10.1186/gb-2006-7-6-r49
PMCID:
PMC1779545
Abstract Full Text PDF–1.3M Supplementary Material
 Is Cited by the Following 10 Articles in this Archive:
Sequence-Based Classification Using Discriminatory Motif Feature Selection
Hao Xiong, Daniel Capurso, Śaunak Sen, Mark R. Segal
PLoS One. 2011; 6(11): e27382. Published online 2011 November 10. doi: 10.1371/journal.pone.0027382
PMCID:
PMC3213122
Abstract Full Text PDF–152K
WordSeeker: concurrent bioinformatics software for discovering genome-wide patterns and word-based genomic signatures
Jens Lichtenberg, Kyle Kurz, Xiaoyu Liang, Rami Al-ouran, Lev Neiman, Lee J Nau, Joshua D Welch, Edwin Jacox, Thomas Bitterman, Klaus Ecker, Laura Elnitski, Frank Drews, Stephen Sauchi Lee, Lonnie R Welch
BMC Bioinformatics. 2010; 11(Suppl 12): S6. Published online 2010 December 21. doi: 10.1186/1471-2105-11-S12-S6
PMCID:
PMC3040532
Abstract Full Text PDF–790K
Characterizing nucleosome dynamics from genomic and epigenetic information using rule induction learning
Ngoc Tu Le, Tu Bao Ho, Dang Hung Tran
BMC Genomics. 2009; 10(Suppl 3): S27. Published online 2009 December 3. doi: 10.1186/1471-2164-10-S3-S27
PMCID:
PMC2788380
Abstract Full Text PDF–348K Supplementary Material
Variations in the transcriptome of Alzheimer's disease reveal molecular networks involved in cardiovascular diseases
Monika Ray, Jianhua Ruan, Weixiong Zhang
Genome Biol. 2008; 9(10): R148. Published online 2008 October 8. doi: 10.1186/gb-2008-9-10-r148
PMCID:
PMC2760875
Abstract Full Text PDF–1.0M Supplementary Material
Identification of novel and candidate miRNAs in rice by high throughput sequencing
Ramanjulu Sunkar, Xuefeng Zhou, Yun Zheng, Weixiong Zhang, Jian-Kang Zhu
BMC Plant Biol. 2008; 8: 25. Published online 2008 February 29. doi: 10.1186/1471-2229-8-25
PMCID:
PMC2292181
Abstract Full Text PDF–530K Supplementary Material
Generic eukaryotic core promoter prediction using structural features of DNA
Thomas Abeel, Yvan Saeys, Eric Bonnet, Pierre Rouzé, Yves Van de Peer
Genome Res. 2008 February; 18(2): 310–323. doi: 10.1101/gr.6991408
PMCID:
PMC2203629
Abstract Full Text PDF–1.0M
fREDUCE: Detection of degenerate regulatory elements using correlation with expression
Randy Z Wu, Christina Chaivorapol, Jiashun Zheng, Hao Li, Shoudan Liang
BMC Bioinformatics. 2007; 8: 399. Published online 2007 October 17. doi: 10.1186/1471-2105-8-399
PMCID:
PMC2174516
Abstract Full Text PDF–307K Supplementary Material
UV-B responsive microRNA genes in Arabidopsis thaliana
Xuefeng Zhou, Guandong Wang, Weixiong Zhang
Mol Syst Biol. 2007; 3: 103. Published online 2007 April 17. doi: 10.1038/msb4100143
PMCID:
PMC1865585
Abstract Full Text PDF–186K
Characterization and Identification of MicroRNA Core Promoters in Four Model Species
Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang
PLoS Comput Biol. 2007 March; 3(3): e37. Prepublished online 2007 January 9. Published online 2007 March 9. doi: 10.1371/journal.pcbi.0030037
PMCID:
PMC1817659
Abstract Full Text PDF–444K
PlantQTL-GE: a database system for identifying candidate genes in rice and Arabidopsis by gene expression and QTL information
Huazong Zeng, Lijun Luo, Weixiong Zhang, Jie Zhou, Zuofeng Li, Hongyan Liu, Tiansheng Zhu, Xiangqian Feng, Yang Zhong
Nucleic Acids Res. 2007 January; 35(Database issue): D879–D882. Published online 2006 November 16. doi: 10.1093/nar/gkl814
PMCID:
PMC1669735
Abstract Full Text PDF–449K
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