My NCBISign In
Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data
Anita Grigoriadis, Alan Mackay, Jorge S Reis-Filho, Dawn Steele, Christian Iseli, Brian J Stevenson, C Victor Jongeneel, Haukur Valgeirsson, Kerry Fenwick, Marjan Iravani, Maria Leao, Andrew JG Simpson, Robert L Strausberg, Parmjit S Jat, Alan Ashworth, A Munro Neville, Michael J O'Hare
Breast Cancer Res. 2006; 8(5): R56. Published online 2006 October 2. doi: 10.1186/bcr1604
PMCID:
PMC1779497
Abstract Full Text PDF–1.5M Supplementary Material

Is Cited by the Following 34 Articles in this Archive:

Maintaining RNA integrity in a homogeneous population of mammary epithelial cells isolated by Laser Capture Microdissection
Claudia Bevilacqua, Samira Makhzami, Jean-Christophe Helbling, Pierre Defrenaix, Patrice Martin
BMC Cell Biol. 2010; 11: 95. Published online 2010 December 6. doi: 10.1186/1471-2121-11-95
PMCID:
PMC3019183
Abstract Full Text PDF–4.8M
Gene expression profiles of estrogen receptor positive and estrogen receptor negative breast cancers are detectable in histologically normal breast epithelium
Kelly Graham, Xijin Ge, Antonio de las Morenas, Anusri Tripathi, Carol L. Rosenberg
Clin Cancer Res. Author manuscript; available in PMC 2012 January 15.
Published in final edited form as: Clin Cancer Res. 2011 January 15; 17(2): 236–246. Published online 2010 November 8. doi: 10.1158/1078-0432.CCR-10-1369
PMCID:
PMC3059257
Abstract Full Text PDF–1.4M Supplementary Material
SULF-2: AN EXTRACELLULAR MODULATOR OF CELL SIGNALING AND A CANCER TARGET CANDIDATE
Steven D. Rosen, Hassan Lemjabbar-Alaoui
Expert Opin Ther Targets. Author manuscript; available in PMC 2011 September 1.
Published in final edited form as: Expert Opin Ther Targets. 2010 September; 14(9): 935–949. doi: 10.1517/14728222.2010.504718
PMCID:
PMC3126665
Abstract Full Text PDF–1.1M
Dissecting the transcriptional networks underlying breast cancer: NR4A1 reduces the migration of normal and breast cancer cell lines
Annika N Alexopoulou, Maria Leao, Otavia L Caballero, Leonard Da Silva, Lynne Reid, Sunil R Lakhani, Andrew J Simpson, John F Marshall, A Munro Neville, Parmjit S Jat
Breast Cancer Res. 2010; 12(4): R51. Published online 2010 July 19. doi: 10.1186/bcr2610
PMCID:
PMC2949640
Abstract Full Text PDF–1.3M Supplementary Material
Massively Parallel Signature Sequencing and Bioinformatics Analysis Identifies Up-Regulation of TGFBI and SOX4 in Human Glioblastoma
Biaoyang Lin, Anup Madan, Jae-Geun Yoon, Xuefeng Fang, Xiaowei Yan, Taek-Kyun Kim, Daehee Hwang, Leroy Hood, Gregory Foltz
PLoS One. 2010; 5(4): e10210. Published online 2010 April 19. doi: 10.1371/journal.pone.0010210
PMCID:
PMC2856677
Abstract Full Text PDF–606K Supplementary Material
Gene expression in histologically normal epithelium from breast cancer patients and from cancer-free prophylactic mastectomy patients shares a similar profile
K Graham, A de las Morenas, A Tripathi, C King, M Kavanah, J Mendez, M Stone, J Slama, M Miller, G Antoine, H Willers, P Sebastiani, C L Rosenberg
Br J Cancer. 2010 April 13; 102(8): 1284–1293. Published online 2010 March 2. doi: 10.1038/sj.bjc.6605576
PMCID:
PMC2855998
Abstract Full Text PDF–1.0M Supplementary Material
Comparison of Breast Cancer to Healthy Control Tissue Discovers Novel Markers with Potential for Prognosis and Early Detection
Michèl Schummer, Ann Green, J. David Beatty, Beth Y. Karlan, Scott Karlan, Jenny Gross, Sean Thornton, Martin McIntosh, Nicole Urban
PLoS One. 2010; 5(2): e9122. Published online 2010 February 9. doi: 10.1371/journal.pone.0009122
Correction in:
PLoS One. 2010; 5(4): 10.1371/annotation/632c5ae8-271b-4d19-8509-dc3b2eefe6a4.
PMCID:
PMC2817747
Abstract Full Text PDF–324K Supplementary Material Correction
Regulation of intracellular signaling by extracellular glycan remodeling
Randy B. Parker, Jennifer J. Kohler
ACS Chem Biol. Author manuscript; available in PMC 2011 January 15.
Published in final edited form as: ACS Chem Biol. 2010 January 15; 5(1): 35–46. doi: 10.1021/cb9002514
PMCID:
PMC2825884
Abstract Full Text PDF–1.1M
Integrated Proteomic Analysis of Human Cancer Cells and Plasma from Tumor Bearing Mice for Ovarian Cancer Biomarker Discovery
Sharon J. Pitteri, Lellean JeBailey, Vitor M. Faça, Jason D. Thorpe, Melissa A. Silva, Reneé C. Ireton, Marc B. Horton, Hong Wang, Liese C. Pruitt, Qing Zhang, Kuang H. Cheng, Nicole Urban, Samir M. Hanash, Daniela M. Dinulescu
PLoS One. 2009; 4(11): e7916. Published online 2009 November 19. doi: 10.1371/journal.pone.0007916
Correction in:
PLoS One. 2009; 4(12): 10.1371/annotation/b29e7b74-4f55-4a44-8db6-e9480bef4872.
PMCID:
PMC2775948
Abstract Full Text PDF–806K Supplementary Material Correction
Sulf-2, a heparan sulfate endosulfatase, promotes human lung carcinogenesis
Hassan Lemjabbar-Alaoui, Annemieke van Zante, Mark S. Singer, Qing Xue, Yang-Qing Wang, Durwin Tsay, Biao He, David M. Jablons, Steven D. Rosen
Oncogene. Author manuscript; available in PMC 2010 August 4.
Published in final edited form as: Oncogene. 2010 February 4; 29(5): 635. Published online 2009 October 26. doi: 10.1038/onc.2009.365
PMCID:
PMC2818095
Abstract Full Text PDF–4.5M Supplementary Material
The NRG1 gene is frequently silenced by methylation in breast cancers and is a strong candidate for the 8p tumour suppressor gene
YL Chua, Y Ito, JCM Pole, S Newman, S-F Chin, RC Stein, IO Ellis, C Caldas, MJ O’Hare, A Murrell, PAW Edwards
Oncogene. Author manuscript; available in PMC 2010 May 19.
Published in final edited form as: Oncogene. 2009 November 19; 28(46): 4041–4052. Published online 2009 October 5. doi: 10.1038/onc.2009.259
PMCID:
PMC2789334
Abstract Full Text PDF–747K Supplementary Material
CT-X antigen expression in human breast cancer
Anita Grigoriadis, Otavia L. Caballero, Keith S. Hoek, Leonard da Silva, Yao-Tseng Chen, Sandra J. Shin, Achim A. Jungbluth, Lance D. Miller, David Clouston, Jonathan Cebon, Lloyd J. Old, Sunil R. Lakhani, Andrew J. G. Simpson, A. Munro Neville
Proc Natl Acad Sci U S A. 2009 August 11; 106(32): 13493–13498. Published online 2009 July 27. doi: 10.1073/pnas.0906840106
PMCID:
PMC2716388
Abstract Full Text PDF–3.0M Supplementary Material
Identification of differentially expressed sense and antisense transcript pairs in breast epithelial tissues
Anita Grigoriadis, Gavin R Oliver, Austin Tanney, Howard Kendrick, Matt J Smalley, Parmjit Jat, A Munro Neville
BMC Genomics. 2009; 10: 324. Published online 2009 July 17. doi: 10.1186/1471-2164-10-324
PMCID:
PMC2721853
Abstract Full Text PDF–661K Supplementary Material
Caveolin-1 (P132L), a Common Breast Cancer Mutation, Confers Mammary Cell Invasiveness and Defines a Novel Stem Cell/Metastasis-Associated Gene Signature
Gloria Bonuccelli, Mathew C. Casimiro, Federica Sotgia, Chenguang Wang, Manran Liu, Sanjay Katiyar, Jie Zhou, Elliott Dew, Franco Capozza, Kristin M. Daumer, Carlo Minetti, Janet N. Milliman, Fabien Alpy, Marie-Christine Rio, Catherine Tomasetto, Isabelle Mercier, Neal Flomenberg, Philippe G. Frank, Richard G. Pestell, Michael P. Lisanti
Am J Pathol. 2009 May; 174(5): 1650–1662. doi: 10.2353/ajpath.2009.080648
PMCID:
PMC2671254
Abstract Full Text PDF–1.7M
Detailed transcriptome atlas of the pancreatic beta cell
Burak Kutlu, David Burdick, David Baxter, Joanne Rasschaert, Daisy Flamez, Decio L Eizirik, Nils Welsh, Nathan Goodman, Leroy Hood
BMC Med Genomics. 2009; 2: 3. Published online 2009 January 15. doi: 10.1186/1755-8794-2-3
PMCID:
PMC2635377
Abstract Full Text PDF–963K Supplementary Material
A resampling-based meta-analysis for detection of differential gene expression in breast cancer
Bala Gur-Dedeoglu, Ozlen Konu, Serkan Kir, Ahmet Rasit Ozturk, Betul Bozkurt, Gulusan Ergul, Isik G Yulug
BMC Cancer. 2008; 8: 396. Published online 2008 December 30. doi: 10.1186/1471-2407-8-396
PMCID:
PMC2631593
Abstract Full Text PDF–490K Supplementary Material
Genome-wide analysis of cancer/testis gene expression
Oliver Hofmann, Otavia L. Caballero, Brian J. Stevenson, Yao-Tseng Chen, Tzeela Cohen, Ramon Chua, Christopher A. Maher, Sumir Panji, Ulf Schaefer, Adele Kruger, Minna Lehvaslaiho, Piero Carninci, Yoshihide Hayashizaki, C. Victor Jongeneel, Andrew J. G. Simpson, Lloyd J. Old, Winston Hide
Proc Natl Acad Sci U S A. 2008 December 23; 105(51): 20422–20427. Published online 2008 December 16. doi: 10.1073/pnas.0810777105
PMCID:
PMC2603434
Abstract Full Text PDF–840K Supplementary Material
Transcriptome analysis of mammary epithelial subpopulations identifies novel determinants of lineage commitment and cell fate
Howard Kendrick, Joseph L Regan, Fiona-Ann Magnay, Anita Grigoriadis, Costas Mitsopoulos, Marketa Zvelebil, Matthew J Smalley
BMC Genomics. 2008; 9: 591. Published online 2008 December 8. doi: 10.1186/1471-2164-9-591
PMCID:
PMC2629782
Abstract Full Text PDF–4.6M Supplementary Material
Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms
Peter A. C. 't Hoen, Yavuz Ariyurek, Helene H. Thygesen, Erno Vreugdenhil, Rolf H. A. M. Vossen, Renée X. de Menezes, Judith M. Boer, Gert-Jan B. van Ommen, Johan T. den Dunnen
Nucleic Acids Res. 2008 December; 36(21): e141. Published online 2008 December. doi: 10.1093/nar/gkn705
PMCID:
PMC2588528
Abstract Full Text PDF–3.4M Supplementary Material
Gene expression in the human mammary epithelium during lactation: the milk fat globule transcriptome
Patricia D. Maningat, Partha Sen, Monique Rijnkels, Agneta L. Sunehag, Darryl L. Hadsell, Molly Bray, Morey W. Haymond
Physiol Genomics. 2009 March; 37(1): 12–22. Published online 2008 November 18. doi: 10.1152/physiolgenomics.90341.2008
PMCID:
PMC2661101
Abstract Full Text Supplementary Material
SIGMA2: A system for the integrative genomic multi-dimensional analysis of cancer genomes, epigenomes, and transcriptomes
Raj Chari, Bradley P Coe, Craig Wedseltoft, Marie Benetti, Ian M Wilson, Emily A Vucic, Calum MacAulay, Raymond T Ng, Wan L Lam
BMC Bioinformatics. 2008; 9: 422. Published online 2008 October 7. doi: 10.1186/1471-2105-9-422
PMCID:
PMC2571113
Abstract Full Text PDF–1.8M
Different gene-expression profiles for the poorly differentiated carcinoma and the highly differentiated papillary adenocarcinoma in mammary glands support distinct metabolic pathways
Tali Eilon, Itamar Barash
BMC Cancer. 2008; 8: 270. Published online 2008 September 24. doi: 10.1186/1471-2407-8-270
PMCID:
PMC2564980
Abstract Full Text PDF–2.1M Supplementary Material
Periostin Is Expressed in Pericryptal Fibroblasts and Cancer-associated Fibroblasts in the Colon
Yoshinao Kikuchi, Takeshi G. Kashima, Takashi Nishiyama, Kazuhiro Shimazu, Yasuyuki Morishita, Masashi Shimazaki, Isao Kii, Hisanaga Horie, Hideo Nagai, Akira Kudo, Masashi Fukayama
J Histochem Cytochem. 2008 August; 56(8): 753–764. doi: 10.1369/jhc.2008.951061
PMCID:
PMC2443605
Abstract Full Text PDF–2.6M
Endometrial Gene Expression in Early Pregnancy: Lessons From Human Ectopic Pregnancy
Ricardo F. Savaris, Amy E. Hamilton, Bruce A. Lessey, Linda C. Giudice
Reprod Sci. Author manuscript; available in PMC 2010 June 8.
Published in final edited form as: Reprod Sci. 2008 October; 15(8): 797–816. Published online 2008 June 30. doi: 10.1177/1933719108317585
PMCID:
PMC2882188
Abstract Full Text PDF–2.1M
PMC42, a breast progenitor cancer cell line, has normal-like mRNA and microRNA transcriptomes
Anna Git, Inmaculada Spiteri, Cherie Blenkiron, Mark J Dunning, Jessica CM Pole, Suet-Feung Chin, Yanzhong Wang, James Smith, Frederick J Livesey, Carlos Caldas
Breast Cancer Res. 2008; 10(3): R54. Published online 2008 June 27. doi: 10.1186/bcr2109
PMCID:
PMC2481505
Abstract Full Text PDF–1.9M Supplementary Material
Identification of tumor-associated antigens by large-scale analysis of genes expressed in human colorectal cancer
Pedro M. S. Alves, Nicole Lévy, Brian J. Stevenson, Hanifa Bouzourene, Grégory Theiler, Gabriel Bricard, Sebastien Viatte, Maha Ayyoub, Henri Vuilleumier, Jean-Claude R. Givel, Donata Rimoldi, Daniel E. Speiser, C. Victor Jongeneel, Pedro J. Romero, Frédéric Lévy
Cancer Immun. 2008; 8: 11. Published online 2008 June 27.
PMCID:
PMC2935784
Abstract Full Text PDF–1.4M Supplementary Material
Validation of oligoarrays for quantitative exploration of the transcriptome
Vigdis Nygaard, Fang Liu, Marit Holden, Winston P Kuo, Jeff Trimarchi, Lucila Ohno-Machado, Connie L Cepko, Arnoldo Frigessi, Ingrid K Glad, Mark A van de Wiel, Eivind Hovig, Heidi Lyng
BMC Genomics. 2008; 9: 258. Published online 2008 May 30. doi: 10.1186/1471-2164-9-258
PMCID:
PMC2430212
Abstract Full Text PDF–810K Supplementary Material
Allele-Specific Up-Regulation of FGFR2 Increases Susceptibility to Breast Cancer
Kerstin B Meyer, Ana-Teresa Maia, Martin O'Reilly, Andrew E Teschendorff, Suet-Feung Chin, Carlos Caldas, Bruce A. J Ponder
PLoS Biol. 2008 May; 6(5): e108. Published online 2008 May 6. doi: 10.1371/journal.pbio.0060108
PMCID:
PMC2365982
Abstract Full Text PDF–537K Supplementary Material
Regulator of G-protein signalling 2 mRNA is differentially expressed in mammary epithelial subpopulations and over-expressed in the majority of breast cancers
Matthew J Smalley, Marjan Iravani, Maria Leao, Anita Grigoriadis, Howard Kendrick, Tim Dexter, Kerry Fenwick, Joseph L Regan, Kara Britt, Sarah McDonald, Christopher J Lord, Alan MacKay, Alan Ashworth
Breast Cancer Res. 2007; 9(6): R85. Published online 2007 December 8. doi: 10.1186/bcr1834
PMCID:
PMC2246188
Abstract Full Text PDF–1.6M Supplementary Material
Parvin-β Inhibits Breast Cancer Tumorigenicity and Promotes CDK9-Mediated Peroxisome Proliferator-Activated Receptor Gamma 1 Phosphorylation
Cameron N. Johnstone, Perry S. Mongroo, A. Sophie Rich, Michael Schupp, Mark J. Bowser, Andrew S. deLemos, John W. Tobias, Yingqiu Liu, Gregory E. Hannigan, Anil K. Rustgi
Mol Cell Biol. 2008 January; 28(2): 687–704. Published online 2007 November 12. doi: 10.1128/MCB.01617-06
PMCID:
PMC2223422
Abstract Full Text PDF–1.4M Supplementary Material
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