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Gene expression signatures of morphologically normal breast tissue identify basal-like tumors
Greg Finak, Svetlana Sadekova, Francois Pepin, Michael Hallett, Sarkis Meterissian, Fawaz Halwani, Karim Khetani, Margarita Souleimanova, Brent Zabolotny, Atilla Omeroglu, Morag Park
Breast Cancer Res. 2006; 8(5): R58. Published online 2006 October 20. doi: 10.1186/bcr1608
PMCID:
PMC1779486
Abstract Full Text PDF–3.5M Supplementary Material
 Is Cited by the Following 20 Articles in this Archive:
Gene expression profiles of breast biopsies from healthy women identify a group with claudin-low features
Vilde D Haakensen, Ole Christian Lingjærde, Torben Lüders, Margit Riis, Aleix Prat, Melissa A Troester, Marit M Holmen, Jan Ole Frantzen, Linda Romundstad, Dina Navjord, Ida K Bukholm, Tom B Johannesen, Charles M Perou, Giske Ursin, Vessela N Kristensen, Anne-Lise Børresen-Dale, Åslaug Helland
BMC Med Genomics. 2011; 4: 77. Published online 2011 November 1. doi: 10.1186/1755-8794-4-77
PMCID:
PMC3216859
Abstract Full Text PDF–1.9M Supplementary Material
Classification of microarrays; synergistic effects between normalization, gene selection and machine learning
Jenny Önskog, Eva Freyhult, Mattias Landfors, Patrik Rydén, Torgeir R Hvidsten
BMC Bioinformatics. 2011; 12: 390. Published online 2011 October 7. doi: 10.1186/1471-2105-12-390
PMCID:
PMC3229535
Abstract Full Text PDF–1.5M Supplementary Material
Microenvironmental Influences that Drive Progression from Benign Breast Disease to Invasive Breast Cancer
Magdalena A. Cichon, Amy C. Degnim, Daniel W. Visscher, Derek C. Radisky
J Mammary Gland Biol Neoplasia. 2010 December; 15(4): 389–397. Published online 2010 December 16. doi: 10.1007/s10911-010-9195-8
PMCID:
PMC3011086
Abstract Full Text PDF–930K
Stromal microenvironment processes unveiled by biological component analysis of gene expression in xenograft tumor models
Xinan Yang, Younghee Lee, Yong Huang, James L Chen, Rosie H Xing, Yves A Lussier
BMC Bioinformatics. 2010; 11(Suppl 9): S11. Published online 2010 October 28. doi: 10.1186/1471-2105-11-S9-S11
PMCID:
PMC2967741
Abstract Full Text PDF–896K Supplementary Material
Challenges in microarray class discovery: a comprehensive examination of normalization, gene selection and clustering
Eva Freyhult, Mattias Landfors, Jenny Önskog, Torgeir R Hvidsten, Patrik Rydén
BMC Bioinformatics. 2010; 11: 503. Published online 2010 October 11. doi: 10.1186/1471-2105-11-503
PMCID:
PMC3098084
Abstract Full Text PDF–849K Supplementary Material
The Transcription Factor REST Is Lost in Aggressive Breast Cancer
Matthew P. Wagoner, Kearney T. W. Gunsalus, Barry Schoenike, Andrea L. Richardson, Andreas Friedl, Avtar Roopra
PLoS Genet. 2010 June; 6(6): e1000979. Published online 2010 June 10. doi: 10.1371/journal.pgen.1000979
PMCID:
PMC2883591
Abstract Full Text PDF–3.2M Supplementary Material
Gene expression in histologically normal epithelium from breast cancer patients and from cancer-free prophylactic mastectomy patients shares a similar profile
K Graham, A de las Morenas, A Tripathi, C King, M Kavanah, J Mendez, M Stone, J Slama, M Miller, G Antoine, H Willers, P Sebastiani, C L Rosenberg
Br J Cancer. 2010 April 13; 102(8): 1284–1293. Published online 2010 March 2. doi: 10.1038/sj.bjc.6605576
PMCID:
PMC2855998
Abstract Full Text PDF–1.0M Supplementary Material
CrkII Transgene Induces Atypical Mammary Gland Development and Tumorigenesis
Kelly E. Fathers, Sonia Rodrigues, Dongmei Zuo, Indrani Vasudeva Murthy, Michael Hallett, Robert Cardiff, Morag Park
Am J Pathol. 2010 January; 176(1): 446–460. doi: 10.2353/ajpath.2010.090383
PMCID:
PMC2797903
Abstract Full Text PDF–2.2M Supplementary Material
Activation of Host Wound Responses in Breast Cancer Microenvironment
Melissa A. Troester, Myung Hee Lee, Matthew Carter, Cheng Fan, David W. Cowan, Erick Roman Perez, Jason R. Pirone, Charles M. Perou, D. Joseph Jerry, Sallie Smith Schneider
Clin Cancer Res. Author manuscript; available in PMC 2010 November 15.
Published in final edited form as: Clin Cancer Res. 2009 November 15; 15(22): 7020–7028. Published online 2009 November 3. doi: 10.1158/1078-0432.CCR-09-1126
PMCID:
PMC2783932
Abstract Full Text PDF–1.3M
Met induces mammary tumors with diverse histologies and is associated with poor outcome and human basal breast cancer
Marisa G. Ponzo, Robert Lesurf, Stephanie Petkiewicz, Frances P. O'Malley, Dushanthi Pinnaduwage, Irene L. Andrulis, Shelley B. Bull, Naila Chughtai, Dongmei Zuo, Margarita Souleimanova, David Germain, Atilla Omeroglu, Robert D. Cardiff, Michael Hallett, Morag Park
Proc Natl Acad Sci U S A. 2009 August 4; 106(31): 12903–12908. Published online 2009 July 17. doi: 10.1073/pnas.0810402106
PMCID:
PMC2722321
Abstract Full Text PDF–2.4M Supplementary Material
MAKING THE CASE FOR MOLECULAR STAGING OF MPM
Raphael Bueno
Semin Thorac Cardiovasc Surg. Author manuscript; available in PMC 2010 July 16.
Published in final edited form as: Semin Thorac Cardiovasc Surg. 2009 Summer; 21(2): 188–193. doi: 10.1053/j.semtcvs.2009.07.003
PMCID:
PMC2904964
Full Text PDF–404K
Gene expression profiling of the tumor microenvironment during breast cancer progression
Xiao-Jun Ma, Sonika Dahiya, Elizabeth Richardson, Mark Erlander, Dennis C Sgroi
Breast Cancer Res. 2009; 11(1): R7. Published online 2009 February 2. doi: 10.1186/bcr2222
PMCID:
PMC2687710
Abstract Full Text PDF–2.7M Supplementary Material
Breast cancer by proxy: can the microenvironment be both the cause and consequence?
Lone Rønnov-Jessen, Mina J. Bissell
Trends Mol Med. Author manuscript; available in PMC 2010 January 1.
Published in final edited form as: Trends Mol Med. 2009 January; 15(1): 5–13. Published online 2008 December 16. doi: 10.1016/j.molmed.2008.11.001
PMCID:
PMC2746030
Abstract Full Text PDF–1.1M
Wnt1 expression induces short- and long-range cell recruitments that modify mammary tumor development, and are not induced by a cell-autonomous β-catenin effector
Young Chul Kim, Rod J. Clark, Erik A. Ranheim, Caroline M. Alexander
Cancer Res. Author manuscript; available in PMC 2010 February 23.
Published in final edited form as: Cancer Res. 2008 December 15; 68(24): 10145–10153. doi: 10.1158/0008-5472.CAN-08-2992
PMCID:
PMC2827297
Abstract Full Text PDF–2.1M Supplementary Material
Interlobular and intralobular mammary stroma: Genotype may not reflect phenotype
JM Fleming, EL Long, E Ginsburg, D Gerscovich, PS Meltzer, BK Vonderhaar
BMC Cell Biol. 2008; 9: 46. Published online 2008 August 18. doi: 10.1186/1471-2121-9-46
PMCID:
PMC2529294
Abstract Full Text PDF–2.4M
A Splice Variant of HER2 Corresponding to Herstatin Is Expressed in the Noncancerous Breast and in Breast Carcinomas
Triantafyllia Koletsa, Ioannis Kostopoulos, Elpida Charalambous, Barbara Christoforidou, Eleni Nenopoulou, Vassiliki Kotoula
Neoplasia. 2008 July; 10(7): 687–696.
PMCID:
PMC2434206
Abstract Full Text PDF–1.3M
Carcinoma Associated Fibroblast Like Differentiation of Human Mesenchymal Stem Cells
Pravin J. Mishra, Prasun J. Mishra, Rita Humeniuk, Daniel J. Medina, Gabriela Alexe, Jill P. Mesirov, Sridhar Ganesan, John W. Glod, Debabrata Banerjee
Cancer Res. Author manuscript; available in PMC 2009 August 11.
Published in final edited form as: Cancer Res. 2008 June 1; 68(11): 4331–4339. doi: 10.1158/0008-5472.CAN-08-0943
PMCID:
PMC2725025
Abstract Full Text PDF–1.9M Supplementary Material
Using microarrays to study the microenvironment in tumor biology: The crucial role of statistics
Stuart G. Baker, Barnett S. Kramer
Semin Cancer Biol. Author manuscript; available in PMC 2009 October 1.
Published in final edited form as: Semin Cancer Biol. 2008 October; 18(5): 305–310. Published online 2008 March 26. doi: 10.1016/j.semcancer.2008.03.001
PMCID:
PMC2584335
Abstract Full Text PDF–76K
IL-6 triggers malignant features in mammospheres from human ductal breast carcinoma and normal mammary gland
Pasquale Sansone, Gianluca Storci, Simona Tavolari, Tiziana Guarnieri, Catia Giovannini, Mario Taffurelli, Claudio Ceccarelli, Donatella Santini, Paola Paterini, Kenneth B. Marcu, Pasquale Chieco, Massimiliano Bonafè
J Clin Invest. 2007 December 3; 117(12): 3988–4002. Published online 2007 December 3. doi: 10.1172/JCI32533
PMCID:
PMC2096439
Abstract Full Text PDF–2.8M Supplementary Material
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