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M-GCAT: interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species
Todd J Treangen, Xavier Messeguer
BMC Bioinformatics. 2006; 7: 433. Published online 2006 October 5. doi: 10.1186/1471-2105-7-433
PMCID:
PMC1629028
Abstract Full Text PDF–1.1M Supplementary Material

Is Cited by the Following 15 Articles in this Archive:

Transcriptomics and molecular evolutionary rate analysis of the bladderwort (Utricularia), a carnivorous plant with a minimal genome
Enrique Ibarra-Laclette, Victor A Albert, Claudia A Pérez-Torres, Flor Zamudio-Hernández, María de J Ortega-Estrada, Alfredo Herrera-Estrella, Luis Herrera-Estrella
BMC Plant Biol. 2011; 11: 101. Published online 2011 June 3. doi: 10.1186/1471-2229-11-101
PMCID:
PMC3141634
Abstract Full Text PDF–4.1M Supplementary Material
Mugsy: fast multiple alignment of closely related whole genomes
Samuel V. Angiuoli, Steven L. Salzberg
Bioinformatics. 2011 February 1; 27(3): 334–342. Published online 2010 December 9. doi: 10.1093/bioinformatics/btq665
PMCID:
PMC3031037
Abstract Full Text PDF–346K Supplementary Material
genoPlotR: comparative gene and genome visualization in R
Lionel Guy, Jens Roat Kultima, Siv G. E. Andersson
Bioinformatics. 2010 September 15; 26(18): 2334–2335. Published online 2010 July 11. doi: 10.1093/bioinformatics/btq413
PMCID:
PMC2935412
Abstract Full Text PDF–258K
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling, Bob Mau, Nicole T. Perna
PLoS One. 2010; 5(6): e11147. Published online 2010 June 25. doi: 10.1371/journal.pone.0011147
PMCID:
PMC2892488
Abstract Full Text PDF–1.3M Supplementary Material
Comparative genomics of the family Vibrionaceae reveals the wide distribution of genes encoding virulence-associated proteins
Timothy G Lilburn, Jianying Gu, Hong Cai, Yufeng Wang
BMC Genomics. 2010; 11: 369. Published online 2010 June 10. doi: 10.1186/1471-2164-11-369
PMCID:
PMC2890568
Abstract Full Text PDF–1.4M Supplementary Material
Small variable segments constitute a major type of diversity of bacterial genomes at the species level
Fabrice Touzain, Erick Denamur, Claudine Médigue, Valérie Barbe, Meriem El Karoui, Marie-Agnès Petit
Genome Biol. 2010; 11(4): R45. Published online 2010 April 30. doi: 10.1186/gb-2010-11-4-r45
PMCID:
PMC2884548
Abstract Full Text PDF–1.0M Supplementary Material
Parameters for accurate genome alignment
Martin C Frith, Michiaki Hamada, Paul Horton
BMC Bioinformatics. 2010; 11: 80. Published online 2010 February 9. doi: 10.1186/1471-2105-11-80
PMCID:
PMC2829014
Abstract Full Text PDF–1.2M Supplementary Material
Computational Biology Methods and Their Application to the Comparative Genomics of Endocellular Symbiotic Bacteria of Insects
Jennifer Commins, Christina Toft, Mario A Fares
Biol Proced Online. 2009; 11: 52–78. Published online 2009 March 11. doi: 10.1007/s12575-009-9004-1
PMCID:
PMC3055744
Abstract Full Text PDF–550K
Origins of the Xylella fastidiosa Prophage-Like Regions and Their Impact in Genome Differentiation
Alessandro de Mello Varani, Rangel Celso Souza, Helder I. Nakaya, Wanessa Cristina de Lima, Luiz Gonzaga Paula de Almeida, Elliot Watanabe Kitajima, Jianchi Chen, Edwin Civerolo, Ana Tereza Ribeiro Vasconcelos, Marie-Anne Van Sluys
PLoS ONE. 2008; 3(12): e4059. Published online 2008 December 31. doi: 10.1371/journal.pone.0004059
PMCID:
PMC2605562
Abstract Full Text PDF–805K Supplementary Material
MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level
Hélène Chiapello, Annie Gendrault, Christophe Caron, Jérome Blum, Marie-Agnès Petit, Meriem El Karoui
BMC Bioinformatics. 2008; 9: 498. Published online 2008 November 27. doi: 10.1186/1471-2105-9-498
PMCID:
PMC2607288
Abstract Full Text PDF–1.5M Supplementary Material
CoCoNUT: an efficient system for the comparison and analysis of genomes
Mohamed I Abouelhoda, Stefan Kurtz, Enno Ohlebusch
BMC Bioinformatics. 2008; 9: 476. Published online 2008 November 12. doi: 10.1186/1471-2105-9-476
PMCID:
PMC3224568
Abstract Full Text PDF–869K Supplementary Material
Multiple genome alignment for identifying the core structure among moderately related microbial genomes
Ikuo Uchiyama
BMC Genomics. 2008; 9: 515. Published online 2008 October 31. doi: 10.1186/1471-2164-9-515
PMCID:
PMC2615449
Abstract Full Text PDF–1.7M Supplementary Material
Bluejay 1.0: genome browsing and comparison with rich customization provision and dynamic resource linking
Jung Soh, Paul MK Gordon, Morgan L Taschuk, Anguo Dong, Andrew C Ah-Seng, Andrei L Turinsky, Christoph W Sensen
BMC Bioinformatics. 2008; 9: 450. Published online 2008 October 22. doi: 10.1186/1471-2105-9-450
PMCID:
PMC2590619
Abstract Full Text PDF–1.1M Supplementary Material
The impact of the neisserial DNA uptake sequences on genome evolution and stability
Todd J Treangen, Ole Herman Ambur, Tone Tonjum, Eduardo PC Rocha
Genome Biol. 2008; 9(3): R60. Published online 2008 March 26. doi: 10.1186/gb-2008-9-3-r60
PMCID:
PMC2397512
Abstract Full Text PDF–662K Supplementary Material
HoughFeature, a novel method for assessing drug effects in three-color cDNA microarray experiments
Hongya Zhao, Hong Yan
BMC Bioinformatics. 2007; 8: 256. Published online 2007 July 17. doi: 10.1186/1471-2105-8-256
PMCID:
PMC1965489
Abstract Full Text PDF–631K Supplementary Material
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